RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 TCIRG1Q13488 830 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 SPON2Q9BUD6 331 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 ILKAPQ9H0C8 392 aaPredicted RBP9.06□□□□□ -0.96
USF3-201ENST00000316407 ZNF804BA4D1E1 1349 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 MYO9BQ13459 2157 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 DPP9Q86TI2 863 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 ZSWIM2Q8NEG5 633 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 ANKZF1Q9H8Y5 726 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 CLEC16AQ2KHT3 1053 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 TRIM74Q86UV6 250 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 TRIM73Q86UV7 250 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 ATG16L2Q8NAA4 619 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 HNRNPLLQ8WVV9 542 aaKnown RBP9.05□□□□□ -0.96
USF3-201ENST00000316407 TBXAS1P24557 533 aaPredicted RBP9.05□□□□□ -0.96
USF3-201ENST00000316407 GALK1P51570 392 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 RBM44Q6ZP01 1051 aaKnown RBP9.05□□□□□ -0.96
USF3-201ENST00000316407 BBS7Q8IWZ6 715 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 RNFT2Q96EX2 444 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 LY9Q9HBG7 655 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 AVENQ9NQS1 362 aaPredicted RBP9.05□□□□□ -0.96
USF3-201ENST00000316407 PLEKHG3A1L390 1219 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 POLBP06746 335 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 YY1P25490 414 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 RECQLP46063 649 aaPredicted RBP9.05□□□□□ -0.96
USF3-201ENST00000316407 UBE3CQ15386 1083 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 WDR36Q8NI36 951 aaKnown RBP9.05□□□□□ -0.96
USF3-201ENST00000316407 HUS1O60921 280 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 MT-CO1P00395 513 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 COMTP21964 271 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 TBCELQ5QJ74 424 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 C6orf183Q5T699 404 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 DENND5BQ6ZUT9 1274 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 RIBC1Q8N443 379 aaPredicted RBP9.05□□□□□ -0.96
USF3-201ENST00000316407 TDRD5Q8NAT2 981 aaKnown RBP9.05□□□□□ -0.96
USF3-201ENST00000316407 HTRA1Q92743 480 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 TFRCP02786 760 aaKnown RBP9.05□□□□□ -0.96
USF3-201ENST00000316407 AKAP14Q86UN6 197 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 LRRC6Q86X45 466 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 MLPHQ9BV36 600 aaPredicted RBP9.05□□□□□ -0.96
USF3-201ENST00000316407 ADD3Q9UEY8 706 aaKnown RBP9.05□□□□□ -0.96
USF3-201ENST00000316407 HPCAP84074 193 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 TPD52L3Q96J77 140 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 MARK4Q96L34 752 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 KATNAL1Q9BW62 490 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 SRP68Q9UHB9 627 aaKnown RBP9.05□□□□□ -0.96
USF3-201ENST00000316407 SHROOM2Q13796 1616 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 PRIM2P49643 509 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 POU4F1Q01851 419 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 FAXCQ5TGI0 409 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 DPP10Q8N608 796 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 PABPC5Q96DU9 382 aaKnown RBP9.05□□□□□ -0.96
USF3-201ENST00000316407 TSPAN17Q96FV3 270 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 EFCAB1Q9HAE3 211 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 APEX2Q9UBZ4 518 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 F8W8V4 182 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 ERCC2P18074 760 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 MTMR1Q13613 665 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 SERPINB12Q96P63 405 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 EME2A4GXA9 379 aaPredicted RBP9.05□□□□□ -0.96
USF3-201ENST00000316407 UCHL3P15374 230 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 ETFBP38117 255 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 CHRNB3Q05901 458 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 SLC10A5Q5PT55 438 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 PRR23CQ6ZRP0 262 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 RSPH1Q8WYR4 309 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 SLC8A2Q9UPR5 921 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 CDC42BPBQ9Y5S2 1711 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 FAM205CA6NFA0 338 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 SLFN12LQ6IEE8 588 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 TAF2Q6P1X5 1199 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 EFHBQ8N7U6 833 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 YME1L1Q96TA2 773 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 TRMT13Q9NUP7 481 aaKnown RBP9.05□□□□□ -0.96
USF3-201ENST00000316407 ITGB1BP2Q9UKP3 347 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 BTBD3Q9Y2F9 522 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 KPNA1P52294 538 aaPredicted RBP9.05□□□□□ -0.96
USF3-201ENST00000316407 ELF3P78545 371 aaPredicted RBP9.05□□□□□ -0.96
USF3-201ENST00000316407 CACTIN-AS1Q8N1I8 211 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 RORBQ92753 470 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 NACC2Q96BF6 587 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 YIPF2Q9BWQ6 316 aa9.05□□□□□ -0.96
USF3-201ENST00000316407 FAM217BQ9NTX9 383 aaPredicted RBP9.05□□□□□ -0.96
USF3-201ENST00000316407 RBAKQ9NYW8 714 aaPredicted RBP9.05□□□□□ -0.96
USF3-201ENST00000316407 FSBPO95073 299 aa9.04□□□□□ -0.96
USF3-201ENST00000316407 MED26O95402 600 aa9.04□□□□□ -0.96
USF3-201ENST00000316407 MCL1Q07820 350 aa9.04□□□□□ -0.96
USF3-201ENST00000316407 DSTYKQ6XUX3 929 aa9.04□□□□□ -0.96
USF3-201ENST00000316407 EPHX4Q8IUS5 362 aa9.04□□□□□ -0.96
USF3-201ENST00000316407 AGAP11Q8TF27 550 aa9.04□□□□□ -0.96
USF3-201ENST00000316407 RIBC2Q9H4K1 309 aa9.04□□□□□ -0.96
USF3-201ENST00000316407 RPRD1BQ9NQG5 326 aaKnown RBP9.04□□□□□ -0.96
USF3-201ENST00000316407 RAD18Q9NS91 495 aa9.04□□□□□ -0.96
USF3-201ENST00000316407 COPG2Q9UBF2 871 aa9.04□□□□□ -0.96
USF3-201ENST00000316407 SPASTQ9UBP0 616 aa9.04□□□□□ -0.96
USF3-201ENST00000316407 NELFEP18615 380 aaKnown RBP9.04□□□□□ -0.96
USF3-201ENST00000316407 VAC14Q08AM6 782 aa9.04□□□□□ -0.96
USF3-201ENST00000316407 KCTD19Q17RG1 926 aaPredicted RBP9.04□□□□□ -0.96
USF3-201ENST00000316407 KCTD10Q9H3F6 313 aa9.04□□□□□ -0.96
USF3-201ENST00000316407 ADAM30Q9UKF2 790 aa9.04□□□□□ -0.96
USF3-201ENST00000316407 H0YIN7 160 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms