RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 MROH7-TTC4A0A0A0MT08 1334 aa7.92□□□□□ -1.14
LIMCH1-201ENST00000313860 BTBD11A6QL63 1104 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 TPST1O60507 370 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 PIGNO95427 931 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 VIL1P09327 827 aaKnown RBP7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 CD1BP29016 333 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 MESDQ14696 234 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 POSTNQ15063 836 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 UGCGQ16739 394 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 AGBL2Q5U5Z8 902 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 ERAP2Q6P179 960 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 MTSS1LQ765P7 747 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 ZYG11BQ9C0D3 744 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 PCDHGB6Q9Y5F9 930 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 CDH10Q9Y6N8 788 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 KPNA7A9QM74 516 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 MYO1FO00160 1098 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 MRPL12P52815 198 aaKnown RBP7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 TRAF2Q12933 501 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 LRRC14Q15048 493 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 MOB1BQ7L9L4 216 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 CHPFQ8IZ52 775 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 CCDC54Q8NEL0 328 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 AGBL3Q8NEM8 1001 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 LPCAT1Q8NF37 534 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 SETD6Q8TBK2 473 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 ZNF700Q9H0M5 742 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 THAP9Q9H5L6 903 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 TRMT13Q9NUP7 481 aaKnown RBP7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 PPP4R1LQ9P1A2 415 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 ARPP21Q9UBL0 812 aaPredicted RBP7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 SLC25A13Q9UJS0 675 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 BRD4O60885 1362 aaPredicted RBP7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 AQRO60306 1485 aaKnown RBP eCLIP7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 FAM149AA5PLN7 773 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 PSMD14O00487 310 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 RAD51CO43502 376 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 SLC16A8O95907 504 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 RLN1P04808 185 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 RPL13AP40429 203 aaKnown RBP7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 SLC7A5Q01650 507 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 SLC44A2Q8IWA5 706 aaPredicted RBP7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 GIMAP8Q8ND71 665 aaPredicted RBP7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 RSPH9Q9H1X1 276 aaPredicted RBP7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 KRCC1Q9NPI7 259 aaPredicted RBP7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 TRPM5Q9NZQ8 1165 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 BMP15O95972 392 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 PRKACAP17612 351 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 ACAD10Q6JQN1 1059 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 SSX6Q7RTT6 188 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 NDUFAF2Q8N183 169 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 MYCT1Q8N699 235 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 MYCBPAPQ8TBZ2 947 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 SLC13A1Q9BZW2 595 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 CABP2Q9NPB3 220 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 LATS2Q9NRM7 1088 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 CATSPERZQ9NTU4 200 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 FAM118AQ9NWS6 357 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 GAKO14976 1311 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 A0A1B0GVL5 298 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 F8W031 263 aaPredicted RBP7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 AIM2O14862 343 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 ZNF207O43670 478 aaKnown RBP7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 LCKP06239 509 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 GIMD1P0DJR0 217 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 PAX7P23759 505 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 TXKP42681 527 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 MTHFSP49914 203 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 GNAQP50148 359 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 RTN1Q16799 776 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 DPP8Q6V1X1 898 aaPredicted RBP7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 SETD3Q86TU7 594 aaPredicted RBP7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 CDAN1Q8IWY9 1227 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 POC5Q8NA72 575 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 CD248Q9HCU0 757 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 SEC31BQ9NQW1 1179 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 LRFN1Q9P244 771 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 LIMA1Q9UHB6 759 aaKnown RBP7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 DNM3Q9UQ16 869 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 ANGPT4Q9Y264 503 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 KDM2BQ8NHM5 1336 aa7.91□□□□□ -1.14
LIMCH1-201ENST00000313860 EFCAB10A6NFE3 127 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 B8ZZF3 427 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 TSTD3H0UI37 97 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 KCNK1O00180 336 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 FOXP2O15409 715 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 SCGB2A1O75556 95 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 SEC24AO95486 1093 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 RBP1P09455 135 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 RRM1P23921 792 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 LSP1P33241 339 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 ADD2P35612 726 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 LUMP51884 338 aaPredicted RBP7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 PRKAG1P54619 331 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 NFE2L1Q14494 772 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 ZBTB6Q15916 424 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 C8orf34Q49A92 452 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 AKAP14Q86UN6 197 aa7.9□□□□□ -1.14
LIMCH1-201ENST00000313860 FAM160B2Q86V87 743 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms