RNA–Protein interactions for RNA: ENST00000309279.11

CHD6-201, Transcript of chromodomain helicase DNA binding protein 6, humanhuman

TSL 1 (best) BASIC

Gene CHD6, Length 1,635 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD6-201ENST00000309279 ITGA11Q9UKX5 1188 aa8.78□□□□□ -1
CHD6-201ENST00000309279 PRG3Q9Y2Y8 225 aaPredicted RBP8.78□□□□□ -1
CHD6-201ENST00000309279 VWA8A3KMH1 1905 aa8.78□□□□□ -1
CHD6-201ENST00000309279 PRUNE2Q8WUY3 3088 aa8.78□□□□□ -1
CHD6-201ENST00000309279 PRRC2BQ5JSZ5 2229 aaKnown RBP8.78□□□□□ -1
CHD6-201ENST00000309279 COL6A3P12111 3177 aa8.78□□□□□ -1
CHD6-201ENST00000309279 XIRP2A4UGR9 3374 aa8.77□□□□□ -1
CHD6-201ENST00000309279 COL4A4P53420 1690 aaPredicted RBP8.77□□□□□ -1
CHD6-201ENST00000309279 ATG2AQ2TAZ0 1938 aa8.77□□□□□ -1.01
CHD6-201ENST00000309279 TRIM64A6NGJ6 449 aa8.77□□□□□ -1.01
CHD6-201ENST00000309279 TRIM64BA6NI03 449 aa8.77□□□□□ -1.01
CHD6-201ENST00000309279 SPTLC1O15269 473 aa8.77□□□□□ -1.01
CHD6-201ENST00000309279 GRM6O15303 877 aa8.77□□□□□ -1.01
CHD6-201ENST00000309279 KLF4O43474 513 aa8.77□□□□□ -1.01
CHD6-201ENST00000309279 TMCC2O75069 709 aa8.77□□□□□ -1.01
CHD6-201ENST00000309279 PPFIA2O75334 1257 aa8.77□□□□□ -1.01
CHD6-201ENST00000309279 TADA2AO75478 443 aa8.77□□□□□ -1.01
CHD6-201ENST00000309279 TNNC2P02585 160 aa8.77□□□□□ -1.01
CHD6-201ENST00000309279 TMEM191BP0C7N4 346 aa8.77□□□□□ -1.01
CHD6-201ENST00000309279 KRT13P13646 458 aa8.77□□□□□ -1.01
CHD6-201ENST00000309279 DNAJB1P25685 340 aa8.77□□□□□ -1.01
CHD6-201ENST00000309279 GTF2H1P32780 548 aa8.77□□□□□ -1.01
CHD6-201ENST00000309279 GUCY2FP51841 1108 aa8.77□□□□□ -1.01
CHD6-201ENST00000309279 LILRA4P59901 499 aa8.77□□□□□ -1.01
CHD6-201ENST00000309279 SLC7A5Q01650 507 aa8.77□□□□□ -1.01
CHD6-201ENST00000309279 ZACNQ401N2 412 aa8.77□□□□□ -1.01
CHD6-201ENST00000309279 FUT10Q6P4F1 479 aa8.77□□□□□ -1.01
CHD6-201ENST00000309279 ANKS3Q6ZW76 656 aa8.77□□□□□ -1.01
CHD6-201ENST00000309279 GPR65Q8IYL9 337 aa8.77□□□□□ -1.01
CHD6-201ENST00000309279 TMEM130Q8N3G9 435 aa8.77□□□□□ -1.01
CHD6-201ENST00000309279 EFCAB3Q8N7B9 438 aa8.77□□□□□ -1.01
CHD6-201ENST00000309279 LRRC52Q8N7C0 313 aa8.77□□□□□ -1.01
CHD6-201ENST00000309279 POF1BQ8WVV4 589 aa8.77□□□□□ -1.01
CHD6-201ENST00000309279 RABGGTAQ92696 567 aa8.77□□□□□ -1.01
CHD6-201ENST00000309279 SLC35C1Q96A29 364 aa8.77□□□□□ -1.01
CHD6-201ENST00000309279 RBCK1Q9BYM8 510 aa8.77□□□□□ -1.01
CHD6-201ENST00000309279 GPR62Q9BZJ7 368 aa8.77□□□□□ -1.01
CHD6-201ENST00000309279 THAP9Q9H5L6 903 aa8.77□□□□□ -1.01
CHD6-201ENST00000309279 CHST7Q9NS84 486 aa8.77□□□□□ -1.01
CHD6-201ENST00000309279 DNMT3AQ9Y6K1 912 aaPredicted RBP8.77□□□□□ -1.01
CHD6-201ENST00000309279 SF3B1O75533 1304 aaKnown RBP eCLIP8.77□□□□□ -1.019e-6■■■■■ 68.9
CHD6-201ENST00000309279 M0QZQ0 153 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 RFXAPO00287 272 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 PPEF2O14830 753 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 PMM2O15305 246 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 TRAPPC3O43617 180 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 CAVIN2O95810 425 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 CST3P01034 146 aaPredicted RBP8.76□□□□□ -1.01
CHD6-201ENST00000309279 SOD2P04179 222 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 ITGB3P05106 788 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 PNPLA4P41247 253 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 NEK2P51955 445 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 RBP5P82980 135 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 PPP3CAQ08209 521 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 ELAVL2Q12926 359 aaKnown RBP8.76□□□□□ -1.01
CHD6-201ENST00000309279 RAB33AQ14088 237 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 NCAPHQ15003 741 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 ANO6Q4KMQ2 910 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 SCARA3Q6AZY7 606 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 PDE12Q6L8Q7 609 aaKnown RBP8.76□□□□□ -1.01
CHD6-201ENST00000309279 SV2AQ7L0J3 742 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 Q7L0L9 218 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 TRIM59Q8IWR1 403 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 VPS52Q8N1B4 723 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 DEFB123Q8N688 67 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 PJA1Q8NG27 643 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 GDPD5Q8WTR4 605 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 ATP6V1E2Q96A05 226 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 FAM84AQ96KN4 292 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 SUSD3Q96L08 255 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 DNAJC7Q99615 494 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 NAT10Q9H0A0 1025 aaKnown RBP8.76□□□□□ -1.01
CHD6-201ENST00000309279 PRDM12Q9H4Q4 367 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 PLCB1Q9NQ66 1216 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 MTMR10Q9NXD2 777 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 KCTD5Q9NXV2 234 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 NFE2L3Q9Y4A8 694 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 IRAK3Q9Y616 596 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 A0A0B4J203 849 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 FSCN2O14926 492 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 STX10O60499 249 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 E2F6O75461 281 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 STAU1O95793 577 aaKnown RBP8.76□□□□□ -1.01
CHD6-201ENST00000309279 TRIM49P0CI25 452 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 TRIM49CP0CI26 452 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 CTSAP10619 480 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 FGFR3P22607 806 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 POLR2BP30876 1174 aaKnown RBP8.76□□□□□ -1.01
CHD6-201ENST00000309279 TAF6P49848 677 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 ERVFC1P60507 584 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 GABREP78334 506 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 MYL5Q02045 173 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 ADGRE1Q14246 886 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 USP41Q3LFD5 358 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 TTC31Q49AM3 519 aaPredicted RBP8.76□□□□□ -1.01
CHD6-201ENST00000309279 CCDC40Q4G0X9 1142 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 TIGD5Q53EQ6 642 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 CDKAL1Q5VV42 579 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 KIAA0319Q5VV43 1072 aa8.76□□□□□ -1.01
CHD6-201ENST00000309279 TDRD10Q5VZ19 366 aaKnown RBP8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms