RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 CCNJLQ8IV13 435 aa18■□□□□ 0.47
SYNPO-201ENST00000307662 AGBL1Q96MI9 1066 aa18■□□□□ 0.47
SYNPO-201ENST00000307662 KCND1Q9NSA2 647 aa18■□□□□ 0.47
SYNPO-201ENST00000307662 KBTBD4Q9NVX7 518 aa18■□□□□ 0.47
SYNPO-201ENST00000307662 PIM2Q9P1W9 311 aa18■□□□□ 0.47
SYNPO-201ENST00000307662 PNMA3Q9UL41 463 aa18■□□□□ 0.47
SYNPO-201ENST00000307662 CES2O00748 559 aa18■□□□□ 0.47
SYNPO-201ENST00000307662 ELF3P78545 371 aaPredicted RBP18■□□□□ 0.47
SYNPO-201ENST00000307662 TBX2Q13207 712 aaPredicted RBP18■□□□□ 0.47
SYNPO-201ENST00000307662 TMEM132DQ14C87 1099 aa18■□□□□ 0.47
SYNPO-201ENST00000307662 ZNF571Q7Z3V5 609 aaPredicted RBP18■□□□□ 0.47
SYNPO-201ENST00000307662 STK32AQ8WU08 396 aa18■□□□□ 0.47
SYNPO-201ENST00000307662 SPDYE5A6NIY4 337 aa18■□□□□ 0.47
SYNPO-201ENST00000307662 CSTF3Q12996 717 aaKnown RBP18■□□□□ 0.47
SYNPO-201ENST00000307662 SPDYE7PQ495Y7 208 aa18■□□□□ 0.47
SYNPO-201ENST00000307662 SH3KBP1Q96B97 665 aa18■□□□□ 0.47
SYNPO-201ENST00000307662 PHF21AQ96BD5 680 aa18■□□□□ 0.47
SYNPO-201ENST00000307662 ZNF446Q9NWS9 450 aa18■□□□□ 0.47
SYNPO-201ENST00000307662 FAM153BP0C7A2 387 aa17.99■□□□□ 0.47
SYNPO-201ENST00000307662 FAM153CQ494X1 144 aa17.99■□□□□ 0.47
SYNPO-201ENST00000307662 PDPK2PQ6A1A2 396 aa17.99■□□□□ 0.47
SYNPO-201ENST00000307662 LRRC74BQ6ZQY2 392 aa17.99■□□□□ 0.47
SYNPO-201ENST00000307662 C16orf86Q6ZW13 317 aa17.99■□□□□ 0.47
SYNPO-201ENST00000307662 SLC26A11Q86WA9 606 aa17.99■□□□□ 0.47
SYNPO-201ENST00000307662 APPL2Q8NEU8 664 aa17.99■□□□□ 0.47
SYNPO-201ENST00000307662 TFB1MQ8WVM0 346 aaKnown RBP17.99■□□□□ 0.47
SYNPO-201ENST00000307662 GOLGA8TH3BQL2 631 aa17.99■□□□□ 0.47
SYNPO-201ENST00000307662 TRAPPC3O43617 180 aa17.99■□□□□ 0.47
SYNPO-201ENST00000307662 LRRC74AQ0VAA2 488 aa17.99■□□□□ 0.47
SYNPO-201ENST00000307662 BOLA3Q53S33 107 aa17.99■□□□□ 0.47
SYNPO-201ENST00000307662 ZFRQ96KR1 1074 aaKnown RBP17.99■□□□□ 0.47
SYNPO-201ENST00000307662 FAM192AQ9GZU8 254 aa17.99■□□□□ 0.47
SYNPO-201ENST00000307662 OSGEPQ9NPF4 335 aa17.99■□□□□ 0.47
SYNPO-201ENST00000307662 EVPLLA8MZ36 301 aa17.99■□□□□ 0.47
SYNPO-201ENST00000307662 CYP11B2P19099 503 aa17.99■□□□□ 0.47
SYNPO-201ENST00000307662 RAB14P61106 215 aa17.99■□□□□ 0.47
SYNPO-201ENST00000307662 TBL3Q12788 808 aaKnown RBP17.99■□□□□ 0.47
SYNPO-201ENST00000307662 TFDP3Q5H9I0 405 aa17.99■□□□□ 0.47
SYNPO-201ENST00000307662 SEL1L3Q68CR1 1132 aa17.99■□□□□ 0.47
SYNPO-201ENST00000307662 NT5C1AQ9BXI3 368 aa17.99■□□□□ 0.47
SYNPO-201ENST00000307662 TJP2Q9UDY2 1190 aa17.99■□□□□ 0.47
SYNPO-201ENST00000307662 GZMAP12544 262 aa17.99■□□□□ 0.47
SYNPO-201ENST00000307662 GRK2P25098 689 aa17.99■□□□□ 0.47
SYNPO-201ENST00000307662 SOX6P35712 828 aa17.99■□□□□ 0.47
SYNPO-201ENST00000307662 ACADSBP45954 432 aa17.99■□□□□ 0.47
SYNPO-201ENST00000307662 EMC2Q15006 297 aa17.99■□□□□ 0.47
SYNPO-201ENST00000307662 FAXCQ5TGI0 409 aa17.99■□□□□ 0.47
SYNPO-201ENST00000307662 YTHDF3Q7Z739 585 aaKnown RBP17.99■□□□□ 0.47
SYNPO-201ENST00000307662 IPMKQ8NFU5 416 aa17.99■□□□□ 0.47
SYNPO-201ENST00000307662 HDAC7Q8WUI4 952 aa17.99■□□□□ 0.47
SYNPO-201ENST00000307662 SAC3D1A6NKF1 404 aa17.99■□□□□ 0.47
SYNPO-201ENST00000307662 RASA1P20936 1047 aa17.99■□□□□ 0.47
SYNPO-201ENST00000307662 CNTFP26441 200 aa17.99■□□□□ 0.47
SYNPO-201ENST00000307662 PEX5P50542 639 aa17.99■□□□□ 0.47
SYNPO-201ENST00000307662 AARS2Q5JTZ9 985 aaKnown RBP17.99■□□□□ 0.47
SYNPO-201ENST00000307662 GDPD5Q8WTR4 605 aa17.99■□□□□ 0.47
SYNPO-201ENST00000307662 PKP3Q9Y446 797 aa17.99■□□□□ 0.47
SYNPO-201ENST00000307662 DAGLAQ9Y4D2 1042 aa17.99■□□□□ 0.47
SYNPO-201ENST00000307662 RNF103O00237 685 aa17.98■□□□□ 0.47
SYNPO-201ENST00000307662 IL18RAPO95256 599 aa17.98■□□□□ 0.47
SYNPO-201ENST00000307662 ALDH5A1P51649 535 aaPredicted RBP17.98■□□□□ 0.47
SYNPO-201ENST00000307662 CCNG2Q16589 344 aa17.98■□□□□ 0.47
SYNPO-201ENST00000307662 ZBTB49Q6ZSB9 765 aa17.98■□□□□ 0.47
SYNPO-201ENST00000307662 MTMR8Q96EF0 704 aa17.98■□□□□ 0.47
SYNPO-201ENST00000307662 SGF29Q96ES7 293 aa17.98■□□□□ 0.47
SYNPO-201ENST00000307662 JMJD4Q9H9V9 463 aa17.98■□□□□ 0.47
SYNPO-201ENST00000307662 PREPLQ4J6C6 727 aaPredicted RBP17.98■□□□□ 0.47
SYNPO-201ENST00000307662 PLEKHA8Q96JA3 519 aa17.98■□□□□ 0.47
SYNPO-201ENST00000307662 TMEM79Q9BSE2 394 aa17.98■□□□□ 0.47
SYNPO-201ENST00000307662 BTBD7Q9P203 1132 aa17.98■□□□□ 0.47
SYNPO-201ENST00000307662 NYAP2Q9P242 653 aa17.98■□□□□ 0.47
SYNPO-201ENST00000307662 IGSF9BQ9UPX0 1349 aa17.98■□□□□ 0.47
SYNPO-201ENST00000307662 ZSCAN5CA6NGD5 496 aaPredicted RBP17.98■□□□□ 0.47
SYNPO-201ENST00000307662 PIK3CDO00329 1044 aa17.98■□□□□ 0.47
SYNPO-201ENST00000307662 GSNP06396 782 aa17.98■□□□□ 0.47
SYNPO-201ENST00000307662 RALBP11234 206 aa17.98■□□□□ 0.47
SYNPO-201ENST00000307662 PCSK7Q16549 785 aa17.98■□□□□ 0.47
SYNPO-201ENST00000307662 DENND1BQ6P3S1 775 aa17.98■□□□□ 0.47
SYNPO-201ENST00000307662 PKN3Q6P5Z2 889 aa17.98■□□□□ 0.47
SYNPO-201ENST00000307662 LINC00523Q86TU6 105 aa17.98■□□□□ 0.47
SYNPO-201ENST00000307662 TBC1D16Q8TBP0 767 aa17.98■□□□□ 0.47
SYNPO-201ENST00000307662 APBB2Q92870 758 aa17.98■□□□□ 0.47
SYNPO-201ENST00000307662 RIT2Q99578 217 aa17.98■□□□□ 0.47
SYNPO-201ENST00000307662 SH3GL1Q99961 368 aa17.98■□□□□ 0.47
SYNPO-201ENST00000307662 EPS8L2Q9H6S3 715 aa17.98■□□□□ 0.47
SYNPO-201ENST00000307662 TGM2P21980 687 aa17.98■□□□□ 0.47
SYNPO-201ENST00000307662 ERVK-9P63128 1117 aa17.98■□□□□ 0.47
SYNPO-201ENST00000307662 CUL2Q13617 745 aa17.98■□□□□ 0.47
SYNPO-201ENST00000307662 FUT11Q495W5 492 aa17.98■□□□□ 0.47
SYNPO-201ENST00000307662 TMEM237Q96Q45 408 aa17.98■□□□□ 0.47
SYNPO-201ENST00000307662 CRAMP1Q96RY5 1269 aa17.98■□□□□ 0.47
SYNPO-201ENST00000307662 EPHB2P29323 1055 aa17.97■□□□□ 0.47
SYNPO-201ENST00000307662 CHRNB3Q05901 458 aa17.97■□□□□ 0.47
SYNPO-201ENST00000307662 AGAP9Q5VTM2 703 aa17.97■□□□□ 0.47
SYNPO-201ENST00000307662 PLA2G4FQ68DD2 849 aa17.97■□□□□ 0.47
SYNPO-201ENST00000307662 C11orf63Q6NUN7 778 aa17.97■□□□□ 0.47
SYNPO-201ENST00000307662 CCDC126Q96EE4 140 aa17.97■□□□□ 0.47
SYNPO-201ENST00000307662 WRNIP1Q96S55 665 aa17.97■□□□□ 0.47
SYNPO-201ENST00000307662 RPS6KL1Q9Y6S9 549 aa17.97■□□□□ 0.47
SYNPO-201ENST00000307662 SLCO1B7G3V0H7 640 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms