RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 HERC3Q15034 1050 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 FAM83BQ5T0W9 1011 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 SLC22A15Q8IZD6 547 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 BLIDQ8IZY5 108 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 MRRFQ96E11 262 aaKnown RBP5.01□□□□□ -1.61
CSMD3-201ENST00000297405 VTA1Q9NP79 307 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 SAYSD1Q9NPB0 183 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 PRDM8Q9NQV8 689 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 DDX25Q9UHL0 483 aaKnown RBP5.01□□□□□ -1.61
CSMD3-201ENST00000297405 NUP50Q9UKX7 468 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 BACH1O14867 736 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 GMFGO60234 142 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 ARIH2O95376 493 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 MYBL2P10244 700 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 STX4Q12846 297 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 PIGHQ14442 188 aaPredicted RBP5.01□□□□□ -1.61
CSMD3-201ENST00000297405 UGT3A1Q6NUS8 523 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 ZBTB49Q6ZSB9 765 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 PTF1AQ7RTS3 328 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 HELQQ8TDG4 1101 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 REXO4Q9GZR2 422 aaKnown RBP5.01□□□□□ -1.61
CSMD3-201ENST00000297405 RETREG1Q9H6L5 497 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 CD320Q9NPF0 282 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 EIF4ENIF1Q9NRA8 985 aaKnown RBP5.01□□□□□ -1.61
CSMD3-201ENST00000297405 ZC3H7BQ9UGR2 993 aaKnown RBP5.01□□□□□ -1.61
CSMD3-201ENST00000297405 TAGLN3Q9UI15 199 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP5.01□□□□□ -1.61
CSMD3-201ENST00000297405 USTQ9Y2C2 406 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 RTCBQ9Y3I0 505 aaKnown RBP5.01□□□□□ -1.61
CSMD3-201ENST00000297405 TMEM120BA0PK00 339 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 ZNF200P98182 395 aaPredicted RBP5.01□□□□□ -1.61
CSMD3-201ENST00000297405 KDSRQ06136 332 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 SLC18A3Q16572 532 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 FAM98BQ52LJ0 330 aaKnown RBP5.01□□□□□ -1.61
CSMD3-201ENST00000297405 HSD17B12Q53GQ0 312 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 GRHL2Q6ISB3 625 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 FAM199XQ6PEV8 388 aaPredicted RBP5.01□□□□□ -1.61
CSMD3-201ENST00000297405 BNC2Q6ZN30 1099 aaPredicted RBP5.01□□□□□ -1.61
CSMD3-201ENST00000297405 CDKL3Q8IVW4 592 aaPredicted RBP5.01□□□□□ -1.61
CSMD3-201ENST00000297405 NACC1Q96RE7 527 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 MAGI1Q96QZ7 1491 aaPredicted RBP5.01□□□□□ -1.61
CSMD3-201ENST00000297405 ACACAQ13085 2346 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 DCKP27707 260 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 MESDQ14696 234 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 VPS72Q15906 364 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 TMEM161AQ9NX61 479 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 TMCC3Q9ULS5 477 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 ZNF451Q9Y4E5 1061 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 NCOA6Q14686 2063 aaPredicted RBP5.01□□□□□ -1.61
CSMD3-201ENST00000297405 G3V2T6 193 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 MYL2P10916 166 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 RARGP13631 454 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 DNAJB2P25686 324 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 TFAMQ00059 246 aaKnown RBP5.01□□□□□ -1.61
CSMD3-201ENST00000297405 CBX3Q13185 183 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 MAD2L1Q13257 205 aaPredicted RBP5.01□□□□□ -1.61
CSMD3-201ENST00000297405 NAB1Q13506 487 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 ZNF677Q86XU0 584 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 CCDC60Q8IWA6 550 aaPredicted RBP5.01□□□□□ -1.61
CSMD3-201ENST00000297405 GIPC3Q8TF64 312 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 RSPH9Q9H1X1 276 aaPredicted RBP5.01□□□□□ -1.61
CSMD3-201ENST00000297405 PI4KAP2A4QPH2 592 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 GADD45BO75293 160 aaPredicted RBP5.01□□□□□ -1.61
CSMD3-201ENST00000297405 AAGABQ6PD74 315 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 RASAL3Q86YV0 1011 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 THEMISQ8N1K5 641 aaPredicted RBP5.01□□□□□ -1.61
CSMD3-201ENST00000297405 PI4KAP1Q8N8J0 262 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 CENPIQ92674 756 aaPredicted RBP5.01□□□□□ -1.61
CSMD3-201ENST00000297405 FAM149B1Q96BN6 582 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 TCEANC2Q96MN5 208 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 ECSITQ9BQ95 431 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 APOL6Q9BWW8 343 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 ASNSD1Q9NWL6 643 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 NARSO43776 548 aaKnown RBP5.01□□□□□ -1.61
CSMD3-201ENST00000297405 ORC5O43913 435 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 NCAM1P13591 858 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 NR1D2Q14995 579 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 UBE3CQ15386 1083 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 SH2D3CQ8N5H7 860 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 FLT4P35916 1363 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 ABCC5O15440 1437 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 HUS1O60921 280 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 PIK3CAP42336 1068 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 PRKG1Q13976 671 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 FASTKD1Q53R41 847 aaKnown RBP5.01□□□□□ -1.61
CSMD3-201ENST00000297405 CABP7Q86V35 215 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 HEATR4Q86WZ0 1026 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 GAS2L3Q86XJ1 694 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 CHPFQ8IZ52 775 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 XXYLT1Q8NBI6 393 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 SKA2Q8WVK7 121 aaPredicted RBP5.01□□□□□ -1.61
CSMD3-201ENST00000297405 DNAJC7Q99615 494 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 UQCC2Q9BRT2 126 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 RAB21Q9UL25 225 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 MROH2AA6NES4 1674 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 B2RBV5 119 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 WRBO00258 174 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 RGS4P49798 205 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 HPCAP84074 193 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 SPATS1Q496A3 300 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms