RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 AKAP10O43572 662 aa17.96■□□□□ 0.47
SHANK1-201ENST00000293441 POMCP01189 267 aa17.96■□□□□ 0.47
SHANK1-201ENST00000293441 GEMP55040 296 aa17.96■□□□□ 0.47
SHANK1-201ENST00000293441 SOX10P56693 466 aa17.96■□□□□ 0.47
SHANK1-201ENST00000293441 HIST2H2ACQ16777 129 aaPredicted RBP17.96■□□□□ 0.47
SHANK1-201ENST00000293441 KCNT1Q5JUK3 1230 aa17.96■□□□□ 0.47
SHANK1-201ENST00000293441 HIST2H2AA3Q6FI13 130 aa17.96■□□□□ 0.47
SHANK1-201ENST00000293441 C4orf22Q6V702 233 aa17.96■□□□□ 0.47
SHANK1-201ENST00000293441 ZNF555Q8NEP9 628 aa17.96■□□□□ 0.47
SHANK1-201ENST00000293441 ALDH1A2O94788 518 aa17.96■□□□□ 0.47
SHANK1-201ENST00000293441 HPCAP84074 193 aa17.96■□□□□ 0.47
SHANK1-201ENST00000293441 TERF2Q15554 542 aa17.96■□□□□ 0.47
SHANK1-201ENST00000293441 KYNUQ16719 465 aa17.96■□□□□ 0.47
SHANK1-201ENST00000293441 LVRNQ6Q4G3 990 aa17.96■□□□□ 0.47
SHANK1-201ENST00000293441 ZNF556Q9HAH1 456 aa17.96■□□□□ 0.47
SHANK1-201ENST00000293441 ARL2BPQ9Y2Y0 163 aa17.96■□□□□ 0.47
SHANK1-201ENST00000293441 INO80Q9ULG1 1556 aaPredicted RBP17.96■□□□□ 0.47
SHANK1-201ENST00000293441 AIM2O14862 343 aa17.96■□□□□ 0.46
SHANK1-201ENST00000293441 KCTD10Q9H3F6 313 aa17.96■□□□□ 0.46
SHANK1-201ENST00000293441 DNAJC5Q9H3Z4 198 aa17.96■□□□□ 0.46
SHANK1-201ENST00000293441 FOXN3O00409 490 aaPredicted RBP17.95■□□□□ 0.46
SHANK1-201ENST00000293441 SPAG6O75602 509 aa17.95■□□□□ 0.46
SHANK1-201ENST00000293441 MDH1P40925 334 aaKnown RBP17.95■□□□□ 0.46
SHANK1-201ENST00000293441 LAMTOR4Q0VGL1 99 aa17.95■□□□□ 0.46
SHANK1-201ENST00000293441 BOLA3Q53S33 107 aa17.95■□□□□ 0.46
SHANK1-201ENST00000293441 DGKIO75912 1065 aa17.95■□□□□ 0.46
SHANK1-201ENST00000293441 TCN1P20061 433 aaPredicted RBP17.95■□□□□ 0.46
SHANK1-201ENST00000293441 SLFN11Q7Z7L1 901 aa17.95■□□□□ 0.46
SHANK1-201ENST00000293441 DNAJB3Q8WWF6 145 aa17.95■□□□□ 0.46
SHANK1-201ENST00000293441 CGRRF1Q99675 332 aa17.95■□□□□ 0.46
SHANK1-201ENST00000293441 GPATCH2LQ9NWQ4 482 aa17.95■□□□□ 0.46
SHANK1-201ENST00000293441 SNTG2Q9NY99 539 aa17.95■□□□□ 0.46
SHANK1-201ENST00000293441 DSEQ9UL01 958 aa17.95■□□□□ 0.46
SHANK1-201ENST00000293441 SLC12A8A0AV02 714 aa17.95■□□□□ 0.46
SHANK1-201ENST00000293441 MYL4P12829 197 aa17.95■□□□□ 0.46
SHANK1-201ENST00000293441 TGM2P21980 687 aa17.95■□□□□ 0.46
SHANK1-201ENST00000293441 GIT2Q14161 759 aa17.95■□□□□ 0.46
SHANK1-201ENST00000293441 DDX42Q86XP3 938 aaKnown RBP eCLIP17.95■□□□□ 0.46
SHANK1-201ENST00000293441 STAMBPL1Q96FJ0 436 aa17.95■□□□□ 0.46
SHANK1-201ENST00000293441 TRPM5Q9NZQ8 1165 aa17.95■□□□□ 0.46
SHANK1-201ENST00000293441 PCDHB12Q9Y5F1 795 aa17.95■□□□□ 0.46
SHANK1-201ENST00000293441 H2AFYO75367 372 aaKnown RBP17.95■□□□□ 0.46
SHANK1-201ENST00000293441 PLEKP08567 350 aaPredicted RBP17.95■□□□□ 0.46
SHANK1-201ENST00000293441 VEGFAP15692 232 aaPredicted RBP17.95■□□□□ 0.46
SHANK1-201ENST00000293441 FDFT1P37268 417 aa17.95■□□□□ 0.46
SHANK1-201ENST00000293441 RAP1GDS1P52306 607 aa17.95■□□□□ 0.46
SHANK1-201ENST00000293441 CLEC16AQ2KHT3 1053 aa17.95■□□□□ 0.46
SHANK1-201ENST00000293441 Q4G0T1 1027 aa17.95■□□□□ 0.46
SHANK1-201ENST00000293441 DTNAQ9Y4J8 743 aa17.95■□□□□ 0.46
SHANK1-201ENST00000293441 TBKBP1A7MCY6 615 aa17.95■□□□□ 0.46
SHANK1-201ENST00000293441 CENPAP49450 140 aa17.95■□□□□ 0.46
SHANK1-201ENST00000293441 RPL10AP62906 217 aaKnown RBP17.95■□□□□ 0.46
SHANK1-201ENST00000293441 LRIG3Q6UXM1 1119 aa17.95■□□□□ 0.46
SHANK1-201ENST00000293441 CLEC4FQ8N1N0 589 aa17.95■□□□□ 0.46
SHANK1-201ENST00000293441 STX19Q8N4C7 294 aa17.95■□□□□ 0.46
SHANK1-201ENST00000293441 FAM167BQ9BTA0 163 aa17.95■□□□□ 0.46
SHANK1-201ENST00000293441 CEP170BQ9Y4F5 1589 aaPredicted RBP17.95■□□□□ 0.46
SHANK1-201ENST00000293441 CEMIPQ8WUJ3 1361 aa17.95■□□□□ 0.46
SHANK1-201ENST00000293441 ALDH2P05091 517 aa17.94■□□□□ 0.46
SHANK1-201ENST00000293441 BCAT1P54687 386 aa17.94■□□□□ 0.46
SHANK1-201ENST00000293441 HERVK_113P62684 666 aa17.94■□□□□ 0.46
SHANK1-201ENST00000293441 SGF29Q96ES7 293 aa17.94■□□□□ 0.46
SHANK1-201ENST00000293441 GRID1Q9ULK0 1009 aa17.94■□□□□ 0.46
SHANK1-201ENST00000293441 RNASEH1O60930 286 aaKnown RBP17.94■□□□□ 0.46
SHANK1-201ENST00000293441 OXCT1P55809 520 aa17.94■□□□□ 0.46
SHANK1-201ENST00000293441 NCALDP61601 193 aa17.94■□□□□ 0.46
SHANK1-201ENST00000293441 TPCN2Q8NHX9 752 aa17.94■□□□□ 0.46
SHANK1-201ENST00000293441 USP13Q92995 863 aaPredicted RBP17.94■□□□□ 0.46
SHANK1-201ENST00000293441 ARHGAP26Q9UNA1 814 aa17.94■□□□□ 0.46
SHANK1-201ENST00000293441 ADM5C9JUS6 153 aa17.94■□□□□ 0.46
SHANK1-201ENST00000293441 ACTN3Q08043 901 aaPredicted RBP17.94■□□□□ 0.46
SHANK1-201ENST00000293441 CHI3L2Q15782 390 aa17.94■□□□□ 0.46
SHANK1-201ENST00000293441 FAM172AQ8WUF8 416 aa17.94■□□□□ 0.46
SHANK1-201ENST00000293441 BTN2A2Q8WVV5 523 aa17.94■□□□□ 0.46
SHANK1-201ENST00000293441 KAT2BQ92831 832 aa17.94■□□□□ 0.46
SHANK1-201ENST00000293441 HES6Q96HZ4 224 aa17.94■□□□□ 0.46
SHANK1-201ENST00000293441 NCF1BA6NI72 391 aaPredicted RBP17.94■□□□□ 0.46
SHANK1-201ENST00000293441 NCF1CA8MVU1 366 aaPredicted RBP17.94■□□□□ 0.46
SHANK1-201ENST00000293441 NCF1P14598 390 aaPredicted RBP17.94■□□□□ 0.46
SHANK1-201ENST00000293441 MAGEA9P43362 315 aa17.94■□□□□ 0.46
SHANK1-201ENST00000293441 HDAC4P56524 1084 aa17.94■□□□□ 0.46
SHANK1-201ENST00000293441 CYTH1Q15438 398 aa17.94■□□□□ 0.46
SHANK1-201ENST00000293441 TJAP1Q5JTD0 557 aa17.94■□□□□ 0.46
SHANK1-201ENST00000293441 C11orf74Q86VG3 221 aa17.94■□□□□ 0.46
SHANK1-201ENST00000293441 SYN2Q92777 582 aaPredicted RBP17.94■□□□□ 0.46
SHANK1-201ENST00000293441 RNF112Q9ULX5 631 aa17.94■□□□□ 0.46
SHANK1-201ENST00000293441 CFAP73A6NFT4 308 aa17.94■□□□□ 0.46
SHANK1-201ENST00000293441 PSTPIP1O43586 416 aa17.94■□□□□ 0.46
SHANK1-201ENST00000293441 GRIK4Q16099 956 aa17.94■□□□□ 0.46
SHANK1-201ENST00000293441 TRIM65Q6PJ69 517 aa17.94■□□□□ 0.46
SHANK1-201ENST00000293441 TMC7Q7Z402 723 aa17.94■□□□□ 0.46
SHANK1-201ENST00000293441 USP38Q8NB14 1042 aa17.94■□□□□ 0.46
SHANK1-201ENST00000293441 PCYOX1LQ8NBM8 494 aa17.94■□□□□ 0.46
SHANK1-201ENST00000293441 EHD4Q9H223 541 aa17.94■□□□□ 0.46
SHANK1-201ENST00000293441 H3BRB1 525 aa17.93■□□□□ 0.46
SHANK1-201ENST00000293441 CKBP12277 381 aa17.93■□□□□ 0.46
SHANK1-201ENST00000293441 LHX1P48742 406 aa17.93■□□□□ 0.46
SHANK1-201ENST00000293441 TTLL9Q3SXZ7 439 aa17.93■□□□□ 0.46
SHANK1-201ENST00000293441 GRAMD4Q6IC98 578 aa17.93■□□□□ 0.46
SHANK1-201ENST00000293441 C16orf89Q6UX73 402 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms