RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 NDST1P52848 882 aa19.27■□□□□ 0.68
SHKBP1-201ENST00000291842 MMRN1Q13201 1228 aa19.27■□□□□ 0.68
SHKBP1-201ENST00000291842 LAMC2Q13753 1193 aa19.27■□□□□ 0.68
SHKBP1-201ENST00000291842 MORF4L2Q15014 288 aa19.27■□□□□ 0.68
SHKBP1-201ENST00000291842 PRCCQ92733 491 aaPredicted RBP19.27■□□□□ 0.68
SHKBP1-201ENST00000291842 ADPGKQ9BRR6 497 aa19.27■□□□□ 0.68
SHKBP1-201ENST00000291842 NFKBIZQ9BYH8 718 aa19.27■□□□□ 0.68
SHKBP1-201ENST00000291842 PCDH9Q9HC56 1237 aa19.27■□□□□ 0.68
SHKBP1-201ENST00000291842 EURLQ9NYK6 297 aa19.27■□□□□ 0.68
SHKBP1-201ENST00000291842 CYP3A5P20815 502 aa19.27■□□□□ 0.67
SHKBP1-201ENST00000291842 STX2P32856 288 aa19.27■□□□□ 0.67
SHKBP1-201ENST00000291842 CTCFP49711 727 aaPredicted RBP19.27■□□□□ 0.67
SHKBP1-201ENST00000291842 UNC45BQ8IWX7 931 aa19.27■□□□□ 0.67
SHKBP1-201ENST00000291842 MAML1Q92585 1016 aa19.27■□□□□ 0.67
SHKBP1-201ENST00000291842 NSRP1Q9H0G5 558 aaKnown RBP19.27■□□□□ 0.67
SHKBP1-201ENST00000291842 ACTR5Q9H9F9 607 aaPredicted RBP19.27■□□□□ 0.67
SHKBP1-201ENST00000291842 RNF19AQ9NV58 838 aa19.27■□□□□ 0.67
SHKBP1-201ENST00000291842 HAUS2Q9NVX0 235 aa19.27■□□□□ 0.67
SHKBP1-201ENST00000291842 SNX3O60493 162 aa19.26■□□□□ 0.67
SHKBP1-201ENST00000291842 ECM2O94769 699 aaPredicted RBP19.26■□□□□ 0.67
SHKBP1-201ENST00000291842 TNFAIP2Q03169 654 aa19.26■□□□□ 0.67
SHKBP1-201ENST00000291842 TMEM62Q0P6H9 643 aa19.26■□□□□ 0.67
SHKBP1-201ENST00000291842 ZNF268Q14587 947 aaPredicted RBP19.26■□□□□ 0.67
SHKBP1-201ENST00000291842 CDO1Q16878 200 aa19.26■□□□□ 0.67
SHKBP1-201ENST00000291842 FAM187BQ17R55 369 aa19.26■□□□□ 0.67
SHKBP1-201ENST00000291842 SYCP2LQ5T4T6 812 aa19.26■□□□□ 0.67
SHKBP1-201ENST00000291842 CKAP2Q8WWK9 683 aa19.26■□□□□ 0.67
SHKBP1-201ENST00000291842 FOXP3Q9BZS1 431 aa19.26■□□□□ 0.67
SHKBP1-201ENST00000291842 KDM4CQ9H3R0 1056 aa19.26■□□□□ 0.67
SHKBP1-201ENST00000291842 ABCF3Q9NUQ8 709 aa19.26■□□□□ 0.67
SHKBP1-201ENST00000291842 DPP3Q9NY33 737 aa19.26■□□□□ 0.67
SHKBP1-201ENST00000291842 USP18Q9UMW8 372 aa19.26■□□□□ 0.67
SHKBP1-201ENST00000291842 RNF8O76064 485 aa19.26■□□□□ 0.67
SHKBP1-201ENST00000291842 ABHD2P08910 425 aa19.26■□□□□ 0.67
SHKBP1-201ENST00000291842 RGS7P49802 495 aa19.26■□□□□ 0.67
SHKBP1-201ENST00000291842 PKN2Q16513 984 aaKnown RBP19.26■□□□□ 0.67
SHKBP1-201ENST00000291842 C15orf59Q2T9L4 293 aaPredicted RBP19.26■□□□□ 0.67
SHKBP1-201ENST00000291842 MSS51Q4VC12 460 aa19.26■□□□□ 0.67
SHKBP1-201ENST00000291842 FAM133BQ5BKY9 247 aaKnown RBP19.26■□□□□ 0.67
SHKBP1-201ENST00000291842 C9orf131Q5VYM1 1079 aa19.26■□□□□ 0.67
SHKBP1-201ENST00000291842 TRNP1Q6NT89 227 aa19.26■□□□□ 0.67
SHKBP1-201ENST00000291842 NPNTQ6UXI9 565 aa19.26■□□□□ 0.67
SHKBP1-201ENST00000291842 BBS12Q6ZW61 710 aa19.26■□□□□ 0.67
SHKBP1-201ENST00000291842 FAM71DQ8N9W8 422 aa19.26■□□□□ 0.67
SHKBP1-201ENST00000291842 FNIP1Q8TF40 1166 aa19.26■□□□□ 0.67
SHKBP1-201ENST00000291842 RSAD2Q8WXG1 361 aa19.26■□□□□ 0.67
SHKBP1-201ENST00000291842 TGS1Q96RS0 853 aaKnown RBP19.26■□□□□ 0.67
SHKBP1-201ENST00000291842 PEBP4Q96S96 227 aa19.26■□□□□ 0.67
SHKBP1-201ENST00000291842 SLC40A1Q9NP59 571 aa19.26■□□□□ 0.67
SHKBP1-201ENST00000291842 NKIRAS1Q9NYS0 192 aa19.26■□□□□ 0.67
SHKBP1-201ENST00000291842 TCRBV7S3A2A0A539 114 aa19.25■□□□□ 0.67
SHKBP1-201ENST00000291842 ITIH4Q14624 930 aa19.25■□□□□ 0.67
SHKBP1-201ENST00000291842 LACTB2Q53H82 288 aaPredicted RBP19.25■□□□□ 0.67
SHKBP1-201ENST00000291842 FNBP1LQ5T0N5 605 aa19.25■□□□□ 0.67
SHKBP1-201ENST00000291842 MTHFD1LQ6UB35 978 aa19.25■□□□□ 0.67
SHKBP1-201ENST00000291842 CENPUQ71F23 418 aa19.25■□□□□ 0.67
SHKBP1-201ENST00000291842 LINC01465Q8N7H1 131 aa19.25■□□□□ 0.67
SHKBP1-201ENST00000291842 CPT1BQ92523 772 aa19.25■□□□□ 0.67
SHKBP1-201ENST00000291842 MCRS1Q96EZ8 462 aa19.25■□□□□ 0.67
SHKBP1-201ENST00000291842 C16orf70Q9BSU1 422 aa19.25■□□□□ 0.67
SHKBP1-201ENST00000291842 ASB7Q9H672 318 aa19.25■□□□□ 0.67
SHKBP1-201ENST00000291842 WDR35Q9P2L0 1181 aa19.25■□□□□ 0.67
SHKBP1-201ENST00000291842 E5RJQ4 531 aa19.25■□□□□ 0.67
SHKBP1-201ENST00000291842 ALOX15BO15296 676 aa19.25■□□□□ 0.67
SHKBP1-201ENST00000291842 TSPAN1O60635 241 aa19.25■□□□□ 0.67
SHKBP1-201ENST00000291842 TRUB2O95900 331 aaKnown RBP19.25■□□□□ 0.67
SHKBP1-201ENST00000291842 RPL22P35268 128 aaKnown RBP19.25■□□□□ 0.67
SHKBP1-201ENST00000291842 HIF1AQ16665 826 aa19.25■□□□□ 0.67
SHKBP1-201ENST00000291842 ZNF792Q3KQV3 632 aa19.25■□□□□ 0.67
SHKBP1-201ENST00000291842 OR6B2Q6IFH4 312 aa19.25■□□□□ 0.67
SHKBP1-201ENST00000291842 C4orf33Q8N1A6 199 aa19.25■□□□□ 0.67
SHKBP1-201ENST00000291842 KIF12Q96FN5 646 aa19.25■□□□□ 0.67
SHKBP1-201ENST00000291842 ACAP3Q96P50 834 aa19.25■□□□□ 0.67
SHKBP1-201ENST00000291842 ZNF408Q9H9D4 720 aa19.25■□□□□ 0.67
SHKBP1-201ENST00000291842 SHOC2Q9UQ13 582 aa19.25■□□□□ 0.67
SHKBP1-201ENST00000291842 VGLL3A8MV65 326 aa19.24■□□□□ 0.67
SHKBP1-201ENST00000291842 H3BRB1 525 aa19.24■□□□□ 0.67
SHKBP1-201ENST00000291842 HGSO14964 777 aaPredicted RBP19.24■□□□□ 0.67
SHKBP1-201ENST00000291842 MAGEB2O15479 319 aa19.24■□□□□ 0.67
SHKBP1-201ENST00000291842 VDRP11473 427 aa19.24■□□□□ 0.67
SHKBP1-201ENST00000291842 KRT15P19012 456 aa19.24■□□□□ 0.67
SHKBP1-201ENST00000291842 SSTR1P30872 391 aa19.24■□□□□ 0.67
SHKBP1-201ENST00000291842 SNAPC2Q13487 334 aa19.24■□□□□ 0.67
SHKBP1-201ENST00000291842 EFTUD2Q15029 972 aaKnown RBP eCLIP19.24■□□□□ 0.67
SHKBP1-201ENST00000291842 CEP128Q6ZU80 1094 aa19.24■□□□□ 0.67
SHKBP1-201ENST00000291842 ZC3H18Q86VM9 953 aaKnown RBP19.24■□□□□ 0.67
SHKBP1-201ENST00000291842 GPRC5AQ8NFJ5 357 aa19.24■□□□□ 0.67
SHKBP1-201ENST00000291842 PPTC7Q8NI37 304 aa19.24■□□□□ 0.67
SHKBP1-201ENST00000291842 TTC25Q96NG3 672 aa19.24■□□□□ 0.67
SHKBP1-201ENST00000291842 TUT1Q9H6E5 874 aaKnown RBP19.24■□□□□ 0.67
SHKBP1-201ENST00000291842 TSPAN16Q9UKR8 245 aa19.24■□□□□ 0.67
SHKBP1-201ENST00000291842 BARX2Q9UMQ3 279 aaPredicted RBP19.24■□□□□ 0.67
SHKBP1-201ENST00000291842 FARP1Q9Y4F1 1045 aaPredicted RBP19.24■□□□□ 0.67
SHKBP1-201ENST00000291842 P4HA1P13674 534 aa19.24■□□□□ 0.67
SHKBP1-201ENST00000291842 ATICP31939 592 aa19.24■□□□□ 0.67
SHKBP1-201ENST00000291842 GPX6P59796 221 aa19.24■□□□□ 0.67
SHKBP1-201ENST00000291842 EIF3EP60228 445 aaKnown RBP19.24■□□□□ 0.67
SHKBP1-201ENST00000291842 KIZQ2M2Z5 673 aa19.24■□□□□ 0.67
SHKBP1-201ENST00000291842 ARHGEF18Q6ZSZ5 1173 aa19.24■□□□□ 0.67
SHKBP1-201ENST00000291842 FAM183BPQ6ZVS7 135 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms