RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 KBTBD4Q9NVX7 518 aa13.66□□□□□ -0.22
CD44-203ENST00000278386 DUS2Q9NX74 493 aaKnown RBP13.66□□□□□ -0.22
CD44-203ENST00000278386 TFIP11Q9UBB9 837 aaKnown RBP13.66□□□□□ -0.22
CD44-203ENST00000278386 MAGEC2Q9UBF1 373 aaPredicted RBP13.66□□□□□ -0.22
CD44-203ENST00000278386 CDH9Q9ULB4 789 aa13.66□□□□□ -0.22
CD44-203ENST00000278386 SLC8A2Q9UPR5 921 aa13.66□□□□□ -0.22
CD44-203ENST00000278386 UBE4BO95155 1302 aa13.65□□□□□ -0.22
CD44-203ENST00000278386 OTOL1A6NHN0 477 aaPredicted RBP13.65□□□□□ -0.22
CD44-203ENST00000278386 SOBPA7XYQ1 873 aa13.65□□□□□ -0.22
CD44-203ENST00000278386 GABRDO14764 452 aa13.65□□□□□ -0.22
CD44-203ENST00000278386 CUTAO60888 179 aa13.65□□□□□ -0.22
CD44-203ENST00000278386 LRP3O75074 770 aa13.65□□□□□ -0.22
CD44-203ENST00000278386 YEATS4O95619 227 aa13.65□□□□□ -0.22
CD44-203ENST00000278386 EGFP01133 1207 aa13.65□□□□□ -0.22
CD44-203ENST00000278386 CCDC192P0DO97 292 aa13.65□□□□□ -0.22
CD44-203ENST00000278386 TNNI1P19237 187 aa13.65□□□□□ -0.22
CD44-203ENST00000278386 TGM1P22735 817 aa13.65□□□□□ -0.22
CD44-203ENST00000278386 HOXC13P31276 330 aa13.65□□□□□ -0.22
CD44-203ENST00000278386 GRIK1P39086 918 aa13.65□□□□□ -0.22
CD44-203ENST00000278386 MAGEA11P43364 429 aa13.65□□□□□ -0.22
CD44-203ENST00000278386 PXNP49023 591 aaPredicted RBP13.65□□□□□ -0.22
CD44-203ENST00000278386 ATXN1P54253 815 aaKnown RBP13.65□□□□□ -0.22
CD44-203ENST00000278386 MAPRE1Q15691 268 aaKnown RBP13.65□□□□□ -0.22
CD44-203ENST00000278386 ZNF77Q15935 545 aa13.65□□□□□ -0.22
CD44-203ENST00000278386 SNRNP35Q16560 246 aaKnown RBP13.65□□□□□ -0.22
CD44-203ENST00000278386 FOXD4L6Q3SYB3 417 aaPredicted RBP13.65□□□□□ -0.22
CD44-203ENST00000278386 FOXD4L3Q6VB84 417 aaPredicted RBP13.65□□□□□ -0.22
CD44-203ENST00000278386 DPH6Q7L8W6 267 aa13.65□□□□□ -0.22
CD44-203ENST00000278386 ARL14EPQ8N8R7 260 aaPredicted RBP13.65□□□□□ -0.22
CD44-203ENST00000278386 IQUBQ8NA54 791 aa13.65□□□□□ -0.22
CD44-203ENST00000278386 ATP2A3Q93084 1043 aa13.65□□□□□ -0.22
CD44-203ENST00000278386 EXOC4Q96A65 974 aa13.65□□□□□ -0.22
CD44-203ENST00000278386 CGRRF1Q99675 332 aa13.65□□□□□ -0.22
CD44-203ENST00000278386 RTKNQ9BST9 563 aa13.65□□□□□ -0.22
CD44-203ENST00000278386 SEMA4GQ9NTN9 838 aa13.65□□□□□ -0.22
CD44-203ENST00000278386 WNT6Q9Y6F9 365 aa13.65□□□□□ -0.22
CD44-203ENST00000278386 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.64□□□□□ -0.23
CD44-203ENST00000278386 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.64□□□□□ -0.23
CD44-203ENST00000278386 DCDC2BA2VCK2 349 aa13.64□□□□□ -0.23
CD44-203ENST00000278386 C2orf78A6NCI8 922 aa13.64□□□□□ -0.23
CD44-203ENST00000278386 TRDMT1O14717 391 aaKnown RBP13.64□□□□□ -0.23
CD44-203ENST00000278386 CLIC2O15247 247 aa13.64□□□□□ -0.23
CD44-203ENST00000278386 ATG13O75143 517 aa13.64□□□□□ -0.23
CD44-203ENST00000278386 HSP90AA1P07900 732 aaKnown RBP13.64□□□□□ -0.23
CD44-203ENST00000278386 PDGFRBP09619 1106 aa13.64□□□□□ -0.23
CD44-203ENST00000278386 DRD1P21728 446 aa13.64□□□□□ -0.23
CD44-203ENST00000278386 KCNA4P22459 653 aa13.64□□□□□ -0.23
CD44-203ENST00000278386 WARSP23381 471 aaKnown RBP13.64□□□□□ -0.23
CD44-203ENST00000278386 BDNFP23560 247 aa13.64□□□□□ -0.23
CD44-203ENST00000278386 LMO2P25791 158 aa13.64□□□□□ -0.23
CD44-203ENST00000278386 GJA4P35212 333 aa13.64□□□□□ -0.23
CD44-203ENST00000278386 TNNC1P63316 161 aa13.64□□□□□ -0.23
CD44-203ENST00000278386 PSMD2Q13200 908 aa13.64□□□□□ -0.23
CD44-203ENST00000278386 MDH1BQ5I0G3 518 aa13.64□□□□□ -0.23
CD44-203ENST00000278386 NAIF1Q69YI7 327 aaPredicted RBP13.64□□□□□ -0.23
CD44-203ENST00000278386 FAM171BQ6P995 826 aa13.64□□□□□ -0.23
CD44-203ENST00000278386 VSTM1Q6UX27 236 aa13.64□□□□□ -0.23
CD44-203ENST00000278386 PRR23CQ6ZRP0 262 aa13.64□□□□□ -0.23
CD44-203ENST00000278386 HS2ST1Q7LGA3 356 aa13.64□□□□□ -0.23
CD44-203ENST00000278386 TRAPPC11Q7Z392 1133 aa13.64□□□□□ -0.23
CD44-203ENST00000278386 FAM160A2Q8N612 972 aaPredicted RBP13.64□□□□□ -0.23
CD44-203ENST00000278386 NETO1Q8TDF5 533 aa13.64□□□□□ -0.23
CD44-203ENST00000278386 SH3RF2Q8TEC5 729 aa13.64□□□□□ -0.23
CD44-203ENST00000278386 OSCP1Q8WVF1 389 aa13.64□□□□□ -0.23
CD44-203ENST00000278386 CHFRQ96EP1 664 aa13.64□□□□□ -0.23
CD44-203ENST00000278386 MYRFLQ96LU7 910 aa13.64□□□□□ -0.23
CD44-203ENST00000278386 HHIPQ96QV1 700 aa13.64□□□□□ -0.23
CD44-203ENST00000278386 SLC22A12Q96S37 553 aa13.64□□□□□ -0.23
CD44-203ENST00000278386 CYP2S1Q96SQ9 504 aa13.64□□□□□ -0.23
CD44-203ENST00000278386 P2RY13Q9BPV8 354 aa13.64□□□□□ -0.23
CD44-203ENST00000278386 BACH2Q9BYV9 841 aa13.64□□□□□ -0.23
CD44-203ENST00000278386 SNX25Q9H3E2 840 aa13.64□□□□□ -0.23
CD44-203ENST00000278386 ECT2Q9H8V3 914 aa13.64□□□□□ -0.23
CD44-203ENST00000278386 MAGEF1Q9HAY2 307 aa13.64□□□□□ -0.23
CD44-203ENST00000278386 CRTAC1Q9NQ79 661 aa13.64□□□□□ -0.23
CD44-203ENST00000278386 AGPAT3Q9NRZ7 376 aa13.64□□□□□ -0.23
CD44-203ENST00000278386 SDK1Q7Z5N4 2213 aa13.64□□□□□ -0.23
CD44-203ENST00000278386 TRIM66O15016 1216 aa13.63□□□□□ -0.23
CD44-203ENST00000278386 POLR2DO15514 142 aaKnown RBP13.63□□□□□ -0.23
CD44-203ENST00000278386 RPP40O75818 363 aaKnown RBP13.63□□□□□ -0.23
CD44-203ENST00000278386 CASP1P29466 404 aa13.63□□□□□ -0.23
CD44-203ENST00000278386 HOXD13P35453 343 aa13.63□□□□□ -0.23
CD44-203ENST00000278386 PDE6CP51160 858 aa13.63□□□□□ -0.23
CD44-203ENST00000278386 CYP24A1Q07973 514 aa13.63□□□□□ -0.23
CD44-203ENST00000278386 IFRD2Q12894 506 aaPredicted RBP13.63□□□□□ -0.23
CD44-203ENST00000278386 TRPC3Q13507 836 aa13.63□□□□□ -0.23
CD44-203ENST00000278386 SHC4Q6S5L8 630 aa13.63□□□□□ -0.23
CD44-203ENST00000278386 DENND5BQ6ZUT9 1274 aa13.63□□□□□ -0.23
CD44-203ENST00000278386 UNC13DQ70J99 1090 aa13.63□□□□□ -0.23
CD44-203ENST00000278386 EPM2AIP1Q7L775 607 aaPredicted RBP13.63□□□□□ -0.23
CD44-203ENST00000278386 XXYLT1Q8NBI6 393 aa13.63□□□□□ -0.23
CD44-203ENST00000278386 OR6B3Q8NGW1 331 aa13.63□□□□□ -0.23
CD44-203ENST00000278386 RPLP0P6Q8NHW5 317 aa13.63□□□□□ -0.23
CD44-203ENST00000278386 GAB3Q8WWW8 586 aa13.63□□□□□ -0.23
CD44-203ENST00000278386 CD101Q93033 1021 aa13.63□□□□□ -0.23
CD44-203ENST00000278386 CCDC127Q96BQ5 260 aa13.63□□□□□ -0.23
CD44-203ENST00000278386 PCED1BQ96HM7 432 aa13.63□□□□□ -0.23
CD44-203ENST00000278386 SPATA17Q96L03 361 aa13.63□□□□□ -0.23
CD44-203ENST00000278386 MRPL45Q9BRJ2 306 aaKnown RBP13.63□□□□□ -0.23
CD44-203ENST00000278386 BLZF1Q9H2G9 400 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms