RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 CD19P15391 556 aa10.55□□□□□ -0.72
LIG3-201ENST00000262327 ATP4AP20648 1035 aa10.55□□□□□ -0.72
LIG3-201ENST00000262327 MMP8P22894 467 aa10.55□□□□□ -0.72
LIG3-201ENST00000262327 CCND2P30279 289 aa10.55□□□□□ -0.72
LIG3-201ENST00000262327 RFC1P35251 1148 aaPredicted RBP10.55□□□□□ -0.72
LIG3-201ENST00000262327 RAP1GAPP47736 663 aa10.55□□□□□ -0.72
LIG3-201ENST00000262327 GCLCP48506 637 aaPredicted RBP10.55□□□□□ -0.72
LIG3-201ENST00000262327 VCPP55072 806 aaKnown RBP10.55□□□□□ -0.72
LIG3-201ENST00000262327 PDK4Q16654 411 aa10.55□□□□□ -0.72
LIG3-201ENST00000262327 HIF1AQ16665 826 aa10.55□□□□□ -0.72
LIG3-201ENST00000262327 CENPUQ71F23 418 aa10.55□□□□□ -0.72
LIG3-201ENST00000262327 PHF13Q86YI8 300 aaPredicted RBP10.55□□□□□ -0.72
LIG3-201ENST00000262327 FBXO36Q8NEA4 188 aa10.55□□□□□ -0.72
LIG3-201ENST00000262327 MCPH1Q8NEM0 835 aa10.55□□□□□ -0.72
LIG3-201ENST00000262327 JOSD2Q8TAC2 188 aa10.55□□□□□ -0.72
LIG3-201ENST00000262327 WDR83Q9BRX9 315 aaKnown RBP10.55□□□□□ -0.72
LIG3-201ENST00000262327 FBXO6Q9NRD1 293 aaPredicted RBP10.55□□□□□ -0.72
LIG3-201ENST00000262327 NXF1Q9UBU9 619 aaKnown RBP10.55□□□□□ -0.72
LIG3-201ENST00000262327 ZFP69BQ9UJL9 534 aa10.55□□□□□ -0.72
LIG3-201ENST00000262327 CHMP2BQ9UQN3 213 aa10.55□□□□□ -0.72
LIG3-201ENST00000262327 A0A0G2JLL6 359 aaPredicted RBP10.54□□□□□ -0.72
LIG3-201ENST00000262327 ZC3H11AO75152 810 aaKnown RBP eCLIP10.54□□□□□ -0.72
LIG3-201ENST00000262327 IL1R2P27930 398 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 BASP1P80723 227 aaKnown RBP10.54□□□□□ -0.72
LIG3-201ENST00000262327 THEMIS2Q5TEJ8 643 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 EEPD1Q7L9B9 569 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 PRRT2Q7Z6L0 340 aaPredicted RBP10.54□□□□□ -0.72
LIG3-201ENST00000262327 UNC45BQ8IWX7 931 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 WDTC1Q8N5D0 677 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 FAM71DQ8N9W8 422 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 DRAXINQ8NBI3 349 aaPredicted RBP10.54□□□□□ -0.72
LIG3-201ENST00000262327 RBM41Q96IZ5 413 aaKnown RBP10.54□□□□□ -0.72
LIG3-201ENST00000262327 PAFAH2Q99487 392 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 ELP3Q9H9T3 547 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 RRAGCQ9HB90 399 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 PDLIM7Q9NR12 457 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 METTL5Q9NRN9 209 aaKnown RBP10.54□□□□□ -0.72
LIG3-201ENST00000262327 TYROBPO43914 113 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 AVILO75366 819 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 ALDH3A1P30838 453 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 CDKN2BP42772 138 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 CPA2P48052 419 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 YARSP54577 528 aaKnown RBP10.54□□□□□ -0.72
LIG3-201ENST00000262327 TFAMQ00059 246 aaKnown RBP10.54□□□□□ -0.72
LIG3-201ENST00000262327 ACVR2BQ13705 512 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 OASLQ15646 514 aaKnown RBP10.54□□□□□ -0.72
LIG3-201ENST00000262327 RAB6CQ53S08 254 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 TFDP3Q5H9I0 405 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 NPNTQ6UXI9 565 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 IGDCC3Q8IVU1 814 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 KIAA0319LQ8IZA0 1049 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 REPS2Q8NFH8 660 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 CPT1BQ92523 772 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 HSPH1Q92598 858 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 TTC17Q96AE7 1141 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 GRAMD1AQ96CP6 724 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 RAB3IPQ96QF0 476 aaPredicted RBP10.54□□□□□ -0.72
LIG3-201ENST00000262327 RAB6CQ9H0N0 254 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 DENND2DQ9H6A0 471 aaPredicted RBP10.54□□□□□ -0.72
LIG3-201ENST00000262327 PSMC3IPQ9P2W1 217 aaPredicted RBP10.54□□□□□ -0.72
LIG3-201ENST00000262327 RABGEF1Q9UJ41 708 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 G3BP2Q9UN86 482 aaKnown RBP10.54□□□□□ -0.72
LIG3-201ENST00000262327 ACTL7BQ9Y614 415 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 ALOX15BO15296 676 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 FAM155BO75949 473 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 TMEM63AO94886 807 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 ABHD2P08910 425 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 SRGAP2CP0DJJ0 459 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 PSMA2P25787 234 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 C1QBPQ07021 282 aaKnown RBP10.54□□□□□ -0.72
LIG3-201ENST00000262327 PDCD2Q16342 344 aaPredicted RBP10.54□□□□□ -0.72
LIG3-201ENST00000262327 MDH1BQ5I0G3 518 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 APBB1IPQ7Z5R6 666 aaPredicted RBP10.54□□□□□ -0.72
LIG3-201ENST00000262327 TTC7BQ86TV6 843 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 ZC3H18Q86VM9 953 aaKnown RBP10.54□□□□□ -0.72
LIG3-201ENST00000262327 PALM2Q8IXS6 379 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 LRMDAQ9H2I8 198 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 CISHQ9NSE2 258 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 KANSL3Q9P2N6 904 aa10.54□□□□□ -0.72
LIG3-201ENST00000262327 MYH9P35579 1960 aaKnown RBP10.54□□□□□ -0.72
LIG3-201ENST00000262327 PARP14Q460N5 1801 aa10.53□□□□□ -0.72
LIG3-201ENST00000262327 PRPF4O43172 522 aaKnown RBP eCLIP10.53□□□□□ -0.72
LIG3-201ENST00000262327 MARK3P27448 753 aa10.53□□□□□ -0.72
LIG3-201ENST00000262327 RPL22P35268 128 aaKnown RBP10.53□□□□□ -0.72
LIG3-201ENST00000262327 PCK1P35558 622 aa10.53□□□□□ -0.72
LIG3-201ENST00000262327 CDH8P55286 799 aa10.53□□□□□ -0.72
LIG3-201ENST00000262327 SLC8A3P57103 927 aa10.53□□□□□ -0.72
LIG3-201ENST00000262327 LMNB2Q03252 620 aa10.53□□□□□ -0.72
LIG3-201ENST00000262327 NR1H3Q13133 447 aa10.53□□□□□ -0.72
LIG3-201ENST00000262327 MORF4L2Q15014 288 aa10.53□□□□□ -0.72
LIG3-201ENST00000262327 SMAD1Q15797 465 aaKnown RBP10.53□□□□□ -0.72
LIG3-201ENST00000262327 FAXCQ5TGI0 409 aa10.53□□□□□ -0.72
LIG3-201ENST00000262327 MAP1SQ66K74 1059 aaPredicted RBP10.53□□□□□ -0.72
LIG3-201ENST00000262327 DENND1BQ6P3S1 775 aa10.53□□□□□ -0.72
LIG3-201ENST00000262327 ANKRD23Q86SG2 305 aa10.53□□□□□ -0.72
LIG3-201ENST00000262327 ARFGAP1Q8N6T3 406 aa10.53□□□□□ -0.72
LIG3-201ENST00000262327 DTX3LQ8TDB6 740 aa10.53□□□□□ -0.72
LIG3-201ENST00000262327 CLMNQ96JQ2 1002 aa10.53□□□□□ -0.72
LIG3-201ENST00000262327 MIPEPQ99797 713 aa10.53□□□□□ -0.72
LIG3-201ENST00000262327 IMPG2Q9BZV3 1241 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms