RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 KCNB2Q92953 911 aa14.08□□□□□ -0.16
SF3A1-201ENST00000215793 H2AFY2Q9P0M6 372 aaPredicted RBP14.08□□□□□ -0.16
SF3A1-201ENST00000215793 SLC11A2P49281 568 aa14.08□□□□□ -0.16
SF3A1-201ENST00000215793 MYBPC2Q14324 1141 aa14.08□□□□□ -0.16
SF3A1-201ENST00000215793 PDIA6Q15084 440 aa14.08□□□□□ -0.16
SF3A1-201ENST00000215793 TFDP3Q5H9I0 405 aa14.08□□□□□ -0.16
SF3A1-201ENST00000215793 TDRD10Q5VZ19 366 aaKnown RBP14.08□□□□□ -0.16
SF3A1-201ENST00000215793 GIMAP4Q9NUV9 329 aa14.08□□□□□ -0.16
SF3A1-201ENST00000215793 WHRNQ9P202 907 aa14.08□□□□□ -0.16
SF3A1-201ENST00000215793 DCDC2Q9UHG0 476 aa14.08□□□□□ -0.16
SF3A1-201ENST00000215793 HPSEQ9Y251 543 aa14.08□□□□□ -0.16
SF3A1-201ENST00000215793 HNRNPCP07910 306 aaKnown RBP eCLIP14.08□□□□□ -0.16
SF3A1-201ENST00000215793 RGS2P41220 211 aa14.08□□□□□ -0.16
SF3A1-201ENST00000215793 ERVK-24P63145 666 aa14.08□□□□□ -0.16
SF3A1-201ENST00000215793 HIST2H2ACQ16777 129 aaPredicted RBP14.08□□□□□ -0.16
SF3A1-201ENST00000215793 HIST2H2AA3Q6FI13 130 aa14.08□□□□□ -0.16
SF3A1-201ENST00000215793 TTI2Q6NXR4 508 aa14.08□□□□□ -0.16
SF3A1-201ENST00000215793 BTNL9Q6UXG8 535 aa14.08□□□□□ -0.16
SF3A1-201ENST00000215793 TADA1Q96BN2 335 aa14.08□□□□□ -0.16
SF3A1-201ENST00000215793 DTNBP1Q96EV8 351 aa14.08□□□□□ -0.16
SF3A1-201ENST00000215793 ADGRA2Q96PE1 1338 aa14.07□□□□□ -0.16
SF3A1-201ENST00000215793 IGF2BP3O00425 579 aaKnown RBP eCLIP14.07□□□□□ -0.16
SF3A1-201ENST00000215793 H2AFYO75367 372 aaKnown RBP14.07□□□□□ -0.16
SF3A1-201ENST00000215793 PMPCBO75439 489 aa14.07□□□□□ -0.16
SF3A1-201ENST00000215793 PLEKP08567 350 aaPredicted RBP14.07□□□□□ -0.16
SF3A1-201ENST00000215793 TCN1P20061 433 aaPredicted RBP14.07□□□□□ -0.16
SF3A1-201ENST00000215793 CBWD2Q8IUF1 395 aa14.07□□□□□ -0.16
SF3A1-201ENST00000215793 KIF2BQ8N4N8 673 aa14.07□□□□□ -0.16
SF3A1-201ENST00000215793 GLT1D1Q96MS3 346 aa14.07□□□□□ -0.16
SF3A1-201ENST00000215793 C17orf80Q9BSJ5 609 aa14.07□□□□□ -0.16
SF3A1-201ENST00000215793 CINPQ9BW66 212 aaPredicted RBP14.07□□□□□ -0.16
SF3A1-201ENST00000215793 APOL5Q9BWW9 433 aa14.07□□□□□ -0.16
SF3A1-201ENST00000215793 IL25Q9H293 177 aa14.07□□□□□ -0.16
SF3A1-201ENST00000215793 TBC1D23Q9NUY8 699 aa14.07□□□□□ -0.16
SF3A1-201ENST00000215793 ATP11BQ9Y2G3 1177 aa14.07□□□□□ -0.16
SF3A1-201ENST00000215793 MED24O75448 989 aa14.07□□□□□ -0.16
SF3A1-201ENST00000215793 UPP2O95045 317 aa14.07□□□□□ -0.16
SF3A1-201ENST00000215793 CYP11B1P15538 503 aa14.07□□□□□ -0.16
SF3A1-201ENST00000215793 MRPS15P82914 257 aaKnown RBP14.07□□□□□ -0.16
SF3A1-201ENST00000215793 ITPK1Q13572 414 aa14.07□□□□□ -0.16
SF3A1-201ENST00000215793 DEPDC1Q5TB30 811 aa14.07□□□□□ -0.16
SF3A1-201ENST00000215793 HORMAD1Q86X24 394 aa14.07□□□□□ -0.16
SF3A1-201ENST00000215793 FAM111AQ96PZ2 611 aa14.07□□□□□ -0.16
SF3A1-201ENST00000215793 MPP6Q9NZW5 540 aa14.07□□□□□ -0.16
SF3A1-201ENST00000215793 TRMT6Q9UJA5 497 aaKnown RBP14.07□□□□□ -0.16
SF3A1-201ENST00000215793 APPL1Q9UKG1 709 aa14.07□□□□□ -0.16
SF3A1-201ENST00000215793 SDR42E2A6NKP2 422 aa14.07□□□□□ -0.16
SF3A1-201ENST00000215793 C2orf81A6NN90 581 aa14.07□□□□□ -0.16
SF3A1-201ENST00000215793 PGK2P07205 417 aa14.07□□□□□ -0.16
SF3A1-201ENST00000215793 ACO1P21399 889 aaKnown RBP14.07□□□□□ -0.16
SF3A1-201ENST00000215793 ETFBP38117 255 aa14.07□□□□□ -0.16
SF3A1-201ENST00000215793 CAP2P40123 477 aa14.07□□□□□ -0.16
SF3A1-201ENST00000215793 HPCAP84074 193 aa14.07□□□□□ -0.16
SF3A1-201ENST00000215793 TRIM69Q86WT6 500 aa14.07□□□□□ -0.16
SF3A1-201ENST00000215793 GALNT4Q8N4A0 578 aa14.07□□□□□ -0.16
SF3A1-201ENST00000215793 CASKIN2Q8WXE0 1202 aa14.07□□□□□ -0.16
SF3A1-201ENST00000215793 CHORDC1Q9UHD1 332 aaPredicted RBP14.07□□□□□ -0.16
SF3A1-201ENST00000215793 SPATA31A6Q5VVP1 1343 aa14.07□□□□□ -0.16
SF3A1-201ENST00000215793 M0R3G1 203 aa14.07□□□□□ -0.16
SF3A1-201ENST00000215793 MPZL3Q6UWV2 235 aa14.07□□□□□ -0.16
SF3A1-201ENST00000215793 ACTRT1Q8TDG2 376 aa14.07□□□□□ -0.16
SF3A1-201ENST00000215793 CNDP1Q96KN2 507 aa14.07□□□□□ -0.16
SF3A1-201ENST00000215793 ECSITQ9BQ95 431 aa14.07□□□□□ -0.16
SF3A1-201ENST00000215793 TMEM106CQ9BVX2 250 aa14.07□□□□□ -0.16
SF3A1-201ENST00000215793 SOX13Q9UN79 622 aa14.07□□□□□ -0.16
SF3A1-201ENST00000215793 A0A0A6YYK5 440 aaPredicted RBP14.06□□□□□ -0.16
SF3A1-201ENST00000215793 VWA5AO00534 786 aa14.06□□□□□ -0.16
SF3A1-201ENST00000215793 SGPL1O95470 568 aa14.06□□□□□ -0.16
SF3A1-201ENST00000215793 VHLP40337 213 aa14.06□□□□□ -0.16
SF3A1-201ENST00000215793 ARL4DP49703 201 aa14.06□□□□□ -0.16
SF3A1-201ENST00000215793 HS6ST3Q8IZP7 471 aa14.06□□□□□ -0.16
SF3A1-201ENST00000215793 RPRD1AQ96P16 312 aaPredicted RBP14.06□□□□□ -0.16
SF3A1-201ENST00000215793 SH3GL3Q99963 347 aa14.06□□□□□ -0.16
SF3A1-201ENST00000215793 NMRK1Q9NWW6 199 aa14.06□□□□□ -0.16
SF3A1-201ENST00000215793 UNC13BO14795 1591 aa14.06□□□□□ -0.16
SF3A1-201ENST00000215793 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP14.06□□□□□ -0.16
SF3A1-201ENST00000215793 AP1G2O75843 785 aa14.06□□□□□ -0.16
SF3A1-201ENST00000215793 IRF1P10914 325 aa14.06□□□□□ -0.16
SF3A1-201ENST00000215793 ZNF177Q13360 481 aaPredicted RBP14.06□□□□□ -0.16
SF3A1-201ENST00000215793 PAPD7Q5XG87 772 aaKnown RBP14.06□□□□□ -0.16
SF3A1-201ENST00000215793 TMEM154Q6P9G4 183 aa14.06□□□□□ -0.16
SF3A1-201ENST00000215793 CCT7Q99832 543 aa14.06□□□□□ -0.16
SF3A1-201ENST00000215793 COLEC11Q9BWP8 271 aa14.06□□□□□ -0.16
SF3A1-201ENST00000215793 UBE2OQ9C0C9 1292 aaKnown RBP14.06□□□□□ -0.16
SF3A1-201ENST00000215793 LRRC40Q9H9A6 602 aa14.06□□□□□ -0.16
SF3A1-201ENST00000215793 FBXO28Q9NVF7 368 aa14.06□□□□□ -0.16
SF3A1-201ENST00000215793 ZNF711Q9Y462 761 aa14.06□□□□□ -0.16
SF3A1-201ENST00000215793 QRICH2Q9H0J4 1663 aa14.06□□□□□ -0.16
SF3A1-201ENST00000215793 CEMIPQ8WUJ3 1361 aa14.06□□□□□ -0.16
SF3A1-201ENST00000215793 E2F8A0AVK6 867 aa14.06□□□□□ -0.16
SF3A1-201ENST00000215793 GRIN3BO60391 1043 aa14.06□□□□□ -0.16
SF3A1-201ENST00000215793 GSNP06396 782 aa14.06□□□□□ -0.16
SF3A1-201ENST00000215793 ACADSP16219 412 aa14.06□□□□□ -0.16
SF3A1-201ENST00000215793 NPTX2P47972 431 aa14.06□□□□□ -0.16
SF3A1-201ENST00000215793 CLK1P49759 484 aaKnown RBP14.06□□□□□ -0.16
SF3A1-201ENST00000215793 SLC26A2P50443 739 aa14.06□□□□□ -0.16
SF3A1-201ENST00000215793 TIGD7Q6NT04 549 aaPredicted RBP14.06□□□□□ -0.16
SF3A1-201ENST00000215793 ZNF467Q7Z7K2 595 aaPredicted RBP14.06□□□□□ -0.16
SF3A1-201ENST00000215793 UNC45BQ8IWX7 931 aa14.06□□□□□ -0.16
SF3A1-201ENST00000215793 FAM9CQ8IZT9 166 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms