RNA–Protein interactions for RNA: YJL061W

NUP82, Transcript of Linker nucleoporin component of the nuclear pore complex (NPC), yeast

Gene NUP82, Length 2,142 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP82	YJL061W	SFT2	P38166	215 aa		0.49	□□□□□ -2.33
NUP82	YJL061W	COA4	Q05809	96 aa		0.49	□□□□□ -2.33
NUP82	YJL061W	YLR307C-A	Q3E825	87 aa		0.49	□□□□□ -2.33
NUP82	YJL061W	MRPL44	P19956	98 aa		0.49	□□□□□ -2.33
NUP82	YJL061W	YPL067C	Q02754	198 aa		0.49	□□□□□ -2.33
NUP82	YJL061W	YOR385W	Q08909	290 aa		0.49	□□□□□ -2.33
NUP82	YJL061W	UTP11	P34247	250 aa	Predicted RBP	0.48	□□□□□ -2.33
NUP82	YJL061W	YMR320W	Q04897	101 aa		0.48	□□□□□ -2.33
NUP82	YJL061W	FIT3	Q08907	204 aa		0.48	□□□□□ -2.33
NUP82	YJL061W	HUG1	Q6Q5K6	68 aa		0.48	□□□□□ -2.33
NUP82	YJL061W	RPL40A	P0CH08	128 aa	Known RBP	0.47	□□□□□ -2.33
NUP82	YJL061W	RPL40B	P0CH09	128 aa	Known RBP	0.47	□□□□□ -2.33
NUP82	YJL061W	EFM5	P53200	248 aa	Known RBP	0.47	□□□□□ -2.33
NUP82	YJL061W	HHO1	P53551	258 aa		0.47	□□□□□ -2.33
NUP82	YJL061W	PFY1	P07274	126 aa		0.47	□□□□□ -2.33
NUP82	YJL061W	YLR157W-E	P0CF00	54 aa		0.47	□□□□□ -2.33
NUP82	YJL061W	RBL2	P48606	106 aa	Known RBP	0.47	□□□□□ -2.33
NUP82	YJL061W	YGR039W	P53225	103 aa		0.47	□□□□□ -2.33
NUP82	YJL061W	YMR321C	Q04898	105 aa		0.47	□□□□□ -2.33
NUP82	YJL061W	RPC19	P28000	142 aa	Known RBP	0.46	□□□□□ -2.34
NUP82	YJL061W	RPS1A	P33442	255 aa	Known RBP	0.46	□□□□□ -2.34
NUP82	YJL061W	EMC4	P53073	190 aa		0.46	□□□□□ -2.34
NUP82	YJL061W	YGL149W	P53116	101 aa		0.46	□□□□□ -2.34
NUP82	YJL061W	BRP1	P53194	125 aa		0.46	□□□□□ -2.34
NUP82	YJL061W	COF1	Q03048	143 aa	Known RBP	0.46	□□□□□ -2.34
NUP82	YJL061W	YOR034C-A	Q3E735	80 aa		0.46	□□□□□ -2.34
NUP82	YJL061W	PRP8	P33334	2413 aa	Known RBP	0.46	□□□□□ -2.34
NUP82	YJL061W	SPC3	Q12133	184 aa		0.45	□□□□□ -2.34
NUP82	YJL061W	MRPL11	P36521	249 aa	Predicted RBP	0.44	□□□□□ -2.34
NUP82	YJL061W	YBR013C	P38215	129 aa		0.44	□□□□□ -2.34
NUP82	YJL061W	YAP3	P38749	330 aa		0.44	□□□□□ -2.34
NUP82	YJL061W	HAP3	P13434	144 aa		0.44	□□□□□ -2.34
NUP82	YJL061W	QCR10	P37299	77 aa		0.44	□□□□□ -2.34
NUP82	YJL061W	AIM4	P38305	123 aa	Predicted RBP	0.44	□□□□□ -2.34
NUP82	YJL061W	MIC27	P50945	234 aa		0.44	□□□□□ -2.34
NUP82	YJL061W	YLR296W	Q05898	108 aa		0.44	□□□□□ -2.34
NUP82	YJL061W	MED11	Q99278	115 aa		0.44	□□□□□ -2.34
NUP82	YJL061W	ATP14	Q12349	124 aa		0.43	□□□□□ -2.34
NUP82	YJL061W	SDH7	Q04401	133 aa		0.43	□□□□□ -2.34
NUP82	YJL061W	GTT2	Q12390	233 aa		0.43	□□□□□ -2.34
NUP82	YJL061W	GSC2	P40989	1895 aa		0.42	□□□□□ -2.34
NUP82	YJL061W	YSF3	P0C074	85 aa	Predicted RBP	0.42	□□□□□ -2.34
NUP82	YJL061W	LDB18	Q07887	179 aa		0.42	□□□□□ -2.34
NUP82	YJL061W	HSP10	P38910	106 aa		0.41	□□□□□ -2.34
NUP82	YJL061W	SNT2	P53127	1403 aa		0.41	□□□□□ -2.34
NUP82	YJL061W	QCR6	P00127	147 aa		0.41	□□□□□ -2.34
NUP82	YJL061W	YCR050C	P25630	102 aa		0.41	□□□□□ -2.34
NUP82	YJL061W	HPM1	P40481	377 aa		0.41	□□□□□ -2.34
NUP82	YJL061W	ELC1	Q03071	99 aa		0.41	□□□□□ -2.34
NUP82	YJL061W	TY4B-J	P47024	1803 aa		0.4	□□□□□ -2.35
NUP82	YJL061W	PAU21	P0CE86	164 aa		0.4	□□□□□ -2.35
NUP82	YJL061W	PAU22	P0CE87	164 aa		0.4	□□□□□ -2.35
NUP82	YJL061W	MRPL31	P14063	131 aa	Predicted RBP	0.4	□□□□□ -2.35
NUP82	YJL061W	GSP1	P32835	219 aa	Known RBP	0.4	□□□□□ -2.35
NUP82	YJL061W	PRS3	P38689	320 aa	Known RBP	0.4	□□□□□ -2.35
NUP82	YJL061W	RPL14A	P36105	138 aa	Known RBP	0.4	□□□□□ -2.35
NUP82	YJL061W	RPL14B	P38754	138 aa	Known RBP	0.4	□□□□□ -2.35
NUP82	YJL061W	AIM18	P38884	321 aa		0.4	□□□□□ -2.35
NUP82	YJL061W	YAL064W	P39711	94 aa		0.4	□□□□□ -2.35
NUP82	YJL061W	LAA1	P39526	2014 aa		0.39	□□□□□ -2.35
NUP82	YJL061W	RTC6	O14464	93 aa		0.39	□□□□□ -2.35
NUP82	YJL061W	FCF2	Q12035	217 aa	Predicted RBP	0.38	□□□□□ -2.35
NUP82	YJL061W	YLR194C	Q05777	254 aa		0.38	□□□□□ -2.35
NUP82	YJL061W	RPL36B	O14455	100 aa	Known RBP	0.37	□□□□□ -2.35
NUP82	YJL061W	RPL36A	P05745	100 aa	Predicted RBP	0.37	□□□□□ -2.35
NUP82	YJL061W	POR2	P40478	281 aa		0.37	□□□□□ -2.35
NUP82	YJL061W	MPC1	P53157	130 aa	Known RBP	0.37	□□□□□ -2.35
NUP82	YJL061W	SRX1	P36077	127 aa		0.37	□□□□□ -2.35
NUP82	YJL061W	YGR017W	P53210	297 aa		0.37	□□□□□ -2.35
NUP82	YJL061W	CSN9	Q03981	162 aa		0.37	□□□□□ -2.35
NUP82	YJL061W	YRF1-3	P0CX14	1859 aa		0.36	□□□□□ -2.35
NUP82	YJL061W	YRF1-7	P0CX15	1859 aa		0.36	□□□□□ -2.35
NUP82	YJL061W	EMP24	P32803	203 aa	Known RBP	0.35	□□□□□ -2.35
NUP82	YJL061W	PHS1	P40857	217 aa		0.35	□□□□□ -2.35
NUP82	YJL061W	TVP18	Q04767	167 aa		0.35	□□□□□ -2.35
NUP82	YJL061W	YIL163C	P40448	117 aa		0.35	□□□□□ -2.35
NUP82	YJL061W	YJR128W	P47162	119 aa		0.35	□□□□□ -2.35
NUP82	YJL061W	YNL277W-A	Q3E7Z0	62 aa		0.35	□□□□□ -2.35
NUP82	YJL061W	GIM4	P40005	111 aa	Known RBP	0.34	□□□□□ -2.35
NUP82	YJL061W	HPA2	Q06592	156 aa		0.34	□□□□□ -2.36
NUP82	YJL061W	TY1B-H	O13535	1793 aa		0.33	□□□□□ -2.36
NUP82	YJL061W	SUA7	P29055	345 aa	Predicted RBP	0.32	□□□□□ -2.36
NUP82	YJL061W	ICS3	P47034	131 aa		0.32	□□□□□ -2.36
NUP82	YJL061W	ERV14	P53173	138 aa		0.32	□□□□□ -2.36
NUP82	YJL061W	ENV10	Q99382	181 aa		0.32	□□□□□ -2.36
NUP82	YJL061W	TRS20	P38334	175 aa		0.32	□□□□□ -2.36
NUP82	YJL061W	Q0144	Q9ZZW2	109 aa		0.32	□□□□□ -2.36
NUP82	YJL061W	TRM732	Q03496	1420 aa		0.32	□□□□□ -2.36
NUP82	YJL061W	HYM1	P32464	399 aa		0.31	□□□□□ -2.36
NUP82	YJL061W	RPS29B	P41058	56 aa	Known RBP	0.31	□□□□□ -2.36
NUP82	YJL061W	ARL3	Q02804	198 aa		0.31	□□□□□ -2.36
NUP82	YJL061W	SEC59	P20048	519 aa		0.31	□□□□□ -2.36
NUP82	YJL061W	CYC2	P38909	366 aa		0.31	□□□□□ -2.36
NUP82	YJL061W	OCA6	Q12454	224 aa		0.31	□□□□□ -2.36
NUP82	YJL061W	YGR240C-A	Q3E786	66 aa		0.31	□□□□□ -2.36
NUP82	YJL061W	RPS20	P38701	121 aa	Known RBP	0.3	□□□□□ -2.36
NUP82	YJL061W	URA2	P07259	2214 aa	Known RBP	0.3	□□□□□ -2.36
NUP82	YJL061W	RPL22A	P05749	121 aa	Known RBP	0.29	□□□□□ -2.36
NUP82	YJL061W	YDR278C	Q05612	105 aa		0.29	□□□□□ -2.36
NUP82	YJL061W	CNL1	Q06333	122 aa		0.29	□□□□□ -2.36

Retrieved 100 of 5,963 RNA–protein pairs in 62.1 ms