RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 SMARCB1Q12824 385 aa11.02□□□□□ -0.65
SCN1A-222ENST00000642141 PSMD6Q15008 389 aa11.02□□□□□ -0.65
SCN1A-222ENST00000642141 WDR72Q3MJ13 1102 aa11.02□□□□□ -0.65
SCN1A-222ENST00000642141 MDH1BQ5I0G3 518 aa11.02□□□□□ -0.65
SCN1A-222ENST00000642141 TRIM68Q6AZZ1 485 aa11.02□□□□□ -0.65
SCN1A-222ENST00000642141 CMTM8Q8IZV2 173 aa11.02□□□□□ -0.65
SCN1A-222ENST00000642141 DCLK2Q8N568 766 aa11.02□□□□□ -0.65
SCN1A-222ENST00000642141 OR6B3Q8NGW1 331 aa11.02□□□□□ -0.65
SCN1A-222ENST00000642141 PLEKHO2Q8TD55 490 aa11.02□□□□□ -0.65
SCN1A-222ENST00000642141 BPIFB1Q8TDL5 484 aa11.02□□□□□ -0.65
SCN1A-222ENST00000642141 USP13Q92995 863 aaPredicted RBP11.02□□□□□ -0.65
SCN1A-222ENST00000642141 MYLPFQ96A32 169 aa11.02□□□□□ -0.65
SCN1A-222ENST00000642141 SLC22A12Q96S37 553 aa11.02□□□□□ -0.65
SCN1A-222ENST00000642141 CGRRF1Q99675 332 aa11.02□□□□□ -0.65
SCN1A-222ENST00000642141 SYT15Q9BQS2 421 aa11.02□□□□□ -0.65
SCN1A-222ENST00000642141 GZF1Q9H116 711 aaPredicted RBP11.02□□□□□ -0.65
SCN1A-222ENST00000642141 SNX25Q9H3E2 840 aa11.02□□□□□ -0.65
SCN1A-222ENST00000642141 GDPD2Q9HCC8 539 aa11.02□□□□□ -0.65
SCN1A-222ENST00000642141 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.02□□□□□ -0.65
SCN1A-222ENST00000642141 EXOC1Q9NV70 894 aa11.02□□□□□ -0.65
SCN1A-222ENST00000642141 MAPK8IP1Q9UQF2 711 aa11.02□□□□□ -0.65
SCN1A-222ENST00000642141 NME7Q9Y5B8 376 aa11.02□□□□□ -0.65
SCN1A-222ENST00000642141 TICRRQ7Z2Z1 1910 aa11.01□□□□□ -0.65
SCN1A-222ENST00000642141 SPECC1L-ADORA2AF8WAN1 911 aa11.01□□□□□ -0.65
SCN1A-222ENST00000642141 PRR29P0C7W0 189 aa11.01□□□□□ -0.65
SCN1A-222ENST00000642141 CSH1P0DML2 217 aa11.01□□□□□ -0.65
SCN1A-222ENST00000642141 CSH2P0DML3 217 aa11.01□□□□□ -0.65
SCN1A-222ENST00000642141 CHRNB1P11230 501 aa11.01□□□□□ -0.65
SCN1A-222ENST00000642141 CMA1P23946 247 aa11.01□□□□□ -0.65
SCN1A-222ENST00000642141 HOXC13P31276 330 aa11.01□□□□□ -0.65
SCN1A-222ENST00000642141 AVPR1AP37288 418 aa11.01□□□□□ -0.65
SCN1A-222ENST00000642141 GRIK1P39086 918 aa11.01□□□□□ -0.65
SCN1A-222ENST00000642141 RAP1GAPP47736 663 aa11.01□□□□□ -0.65
SCN1A-222ENST00000642141 NDUFA8P51970 172 aa11.01□□□□□ -0.65
SCN1A-222ENST00000642141 CDH8P55286 799 aa11.01□□□□□ -0.65
SCN1A-222ENST00000642141 RPL10AP62906 217 aaKnown RBP11.01□□□□□ -0.65
SCN1A-222ENST00000642141 BIRC3Q13489 604 aa11.01□□□□□ -0.65
SCN1A-222ENST00000642141 TRPC3Q13507 836 aa11.01□□□□□ -0.65
SCN1A-222ENST00000642141 PON2Q15165 354 aa11.01□□□□□ -0.65
SCN1A-222ENST00000642141 WDR44Q5JSH3 913 aa11.01□□□□□ -0.65
SCN1A-222ENST00000642141 FAM171BQ6P995 826 aa11.01□□□□□ -0.65
SCN1A-222ENST00000642141 ZC3H14Q6PJT7 736 aaKnown RBP11.01□□□□□ -0.65
SCN1A-222ENST00000642141 KIAA2013Q8IYS2 634 aa11.01□□□□□ -0.65
SCN1A-222ENST00000642141 CELF5Q8N6W0 485 aaKnown RBP11.01□□□□□ -0.65
SCN1A-222ENST00000642141 KIAA0895Q8NCT3 520 aa11.01□□□□□ -0.65
SCN1A-222ENST00000642141 RIN3Q8TB24 985 aa11.01□□□□□ -0.65
SCN1A-222ENST00000642141 ATRIPQ8WXE1 791 aa11.01□□□□□ -0.65
SCN1A-222ENST00000642141 MRPS31Q92665 395 aaKnown RBP11.01□□□□□ -0.65
SCN1A-222ENST00000642141 DPEP3Q9H4B8 488 aa11.01□□□□□ -0.65
SCN1A-222ENST00000642141 EBF3Q9H4W6 596 aa11.01□□□□□ -0.65
SCN1A-222ENST00000642141 ABCB6Q9NP58 842 aa11.01□□□□□ -0.65
SCN1A-222ENST00000642141 TRPV5Q9NQA5 729 aa11.01□□□□□ -0.65
SCN1A-222ENST00000642141 THG1LQ9NWX6 298 aaKnown RBP11.01□□□□□ -0.65
SCN1A-222ENST00000642141 MAGEC2Q9UBF1 373 aaPredicted RBP11.01□□□□□ -0.65
SCN1A-222ENST00000642141 UBE4BO95155 1302 aa11.01□□□□□ -0.65
SCN1A-222ENST00000642141 CACNA1IQ9P0X4 2223 aa11.01□□□□□ -0.65
SCN1A-222ENST00000642141 MIA3Q5JRA6 1907 aa11□□□□□ -0.65
SCN1A-222ENST00000642141 C2orf78A6NCI8 922 aa11□□□□□ -0.65
SCN1A-222ENST00000642141 OTOL1A6NHN0 477 aaPredicted RBP11□□□□□ -0.65
SCN1A-222ENST00000642141 CLDN5O00501 218 aa11□□□□□ -0.65
SCN1A-222ENST00000642141 KINO60870 393 aaKnown RBP11□□□□□ -0.65
SCN1A-222ENST00000642141 ABL1P00519 1130 aa11□□□□□ -0.65
SCN1A-222ENST00000642141 RPN1P04843 607 aaKnown RBP11□□□□□ -0.65
SCN1A-222ENST00000642141 ARSAP15289 507 aa11□□□□□ -0.65
SCN1A-222ENST00000642141 WARSP23381 471 aaKnown RBP11□□□□□ -0.65
SCN1A-222ENST00000642141 CTHP32929 405 aa11□□□□□ -0.65
SCN1A-222ENST00000642141 SYKP43405 635 aa11□□□□□ -0.65
SCN1A-222ENST00000642141 RPS9P46781 194 aaKnown RBP11□□□□□ -0.65
SCN1A-222ENST00000642141 USP46P62068 366 aa11□□□□□ -0.65
SCN1A-222ENST00000642141 TNNC1P63316 161 aa11□□□□□ -0.65
SCN1A-222ENST00000642141 DLG4P78352 724 aa11□□□□□ -0.65
SCN1A-222ENST00000642141 KRT85P78386 507 aa11□□□□□ -0.65
SCN1A-222ENST00000642141 SATB1Q01826 763 aa11□□□□□ -0.65
SCN1A-222ENST00000642141 GAS6Q14393 721 aa11□□□□□ -0.65
SCN1A-222ENST00000642141 LPAL2Q16609 132 aa11□□□□□ -0.65
SCN1A-222ENST00000642141 BMT2Q1RMZ1 405 aa11□□□□□ -0.65
SCN1A-222ENST00000642141 ARHGAP29Q52LW3 1261 aa11□□□□□ -0.65
SCN1A-222ENST00000642141 TDRD10Q5VZ19 366 aaKnown RBP11□□□□□ -0.65
SCN1A-222ENST00000642141 CEP135Q66GS9 1140 aa11□□□□□ -0.65
SCN1A-222ENST00000642141 HEATR6Q6AI08 1181 aaKnown RBP11□□□□□ -0.65
SCN1A-222ENST00000642141 SCARA5Q6ZMJ2 495 aa11□□□□□ -0.65
SCN1A-222ENST00000642141 Q6ZS52 159 aa11□□□□□ -0.65
SCN1A-222ENST00000642141 LIMS2Q7Z4I7 341 aa11□□□□□ -0.65
SCN1A-222ENST00000642141 MON1AQ86VX9 555 aa11□□□□□ -0.65
SCN1A-222ENST00000642141 FSIP1Q8NA03 581 aa11□□□□□ -0.65
SCN1A-222ENST00000642141 PCED1BQ96HM7 432 aa11□□□□□ -0.65
SCN1A-222ENST00000642141 SMYD3Q9H7B4 428 aa11□□□□□ -0.65
SCN1A-222ENST00000642141 TDP1Q9NUW8 608 aa11□□□□□ -0.65
SCN1A-222ENST00000642141 C2orf42Q9NWW7 574 aa11□□□□□ -0.65
SCN1A-222ENST00000642141 FBXO4Q9UKT5 387 aa11□□□□□ -0.65
SCN1A-222ENST00000642141 CDH9Q9ULB4 789 aa11□□□□□ -0.65
SCN1A-222ENST00000642141 PTPRZ1P23471 2315 aaPredicted RBP11□□□□□ -0.65
SCN1A-222ENST00000642141 LRRIQ3A6PVS8 624 aaPredicted RBP10.99□□□□□ -0.65
SCN1A-222ENST00000642141 A8MXQ7 604 aa10.99□□□□□ -0.65
SCN1A-222ENST00000642141 SCAMP3O14828 347 aaKnown RBP10.99□□□□□ -0.65
SCN1A-222ENST00000642141 TADA3O75528 432 aa10.99□□□□□ -0.65
SCN1A-222ENST00000642141 NOL4O94818 638 aa10.99□□□□□ -0.65
SCN1A-222ENST00000642141 NR3C1P04150 777 aa10.99□□□□□ -0.65
SCN1A-222ENST00000642141 CKMP06732 381 aa10.99□□□□□ -0.65
SCN1A-222ENST00000642141 PTPN1P18031 435 aaKnown RBP10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms