RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 KCNK16Q96T55 309 aa5.98□□□□□ -1.45
SCN1A-216ENST00000637968 PDGFDQ9GZP0 370 aaPredicted RBP5.98□□□□□ -1.45
SCN1A-216ENST00000637968 WWP1Q9H0M0 922 aa5.98□□□□□ -1.45
SCN1A-216ENST00000637968 TP63Q9H3D4 680 aaPredicted RBP5.98□□□□□ -1.45
SCN1A-216ENST00000637968 SEMA4AQ9H3S1 761 aa5.98□□□□□ -1.45
SCN1A-216ENST00000637968 LIN28AQ9H9Z2 209 aaKnown RBP5.98□□□□□ -1.45
SCN1A-216ENST00000637968 SACM1LQ9NTJ5 587 aa5.98□□□□□ -1.45
SCN1A-216ENST00000637968 TLL2Q9Y6L7 1015 aa5.98□□□□□ -1.45
SCN1A-216ENST00000637968 MLH3Q9UHC1 1453 aa5.98□□□□□ -1.45
SCN1A-216ENST00000637968 LRRC53A6NM62 1247 aa5.98□□□□□ -1.45
SCN1A-216ENST00000637968 KIF28PB7ZC32 967 aa5.98□□□□□ -1.45
SCN1A-216ENST00000637968 USP12O75317 370 aa5.98□□□□□ -1.45
SCN1A-216ENST00000637968 CTDNEP1O95476 244 aa5.98□□□□□ -1.45
SCN1A-216ENST00000637968 GRK2P25098 689 aa5.98□□□□□ -1.45
SCN1A-216ENST00000637968 SLC5A2P31639 672 aa5.98□□□□□ -1.45
SCN1A-216ENST00000637968 CHRNA3P32297 505 aa5.98□□□□□ -1.45
SCN1A-216ENST00000637968 HIRAP54198 1017 aaPredicted RBP5.98□□□□□ -1.45
SCN1A-216ENST00000637968 DEFA1P59665 94 aa5.98□□□□□ -1.45
SCN1A-216ENST00000637968 DEFA3P59666 94 aa5.98□□□□□ -1.45
SCN1A-216ENST00000637968 DLG1Q12959 904 aa5.98□□□□□ -1.45
SCN1A-216ENST00000637968 NCOA4Q13772 614 aa5.98□□□□□ -1.45
SCN1A-216ENST00000637968 PON2Q15165 354 aa5.98□□□□□ -1.45
SCN1A-216ENST00000637968 STILQ15468 1287 aa5.98□□□□□ -1.45
SCN1A-216ENST00000637968 SHROOM1Q2M3G4 852 aaPredicted RBP5.98□□□□□ -1.45
SCN1A-216ENST00000637968 ATAD3BQ5T9A4 648 aa5.98□□□□□ -1.45
SCN1A-216ENST00000637968 RAPH1Q70E73 1250 aa5.98□□□□□ -1.45
SCN1A-216ENST00000637968 G2E3Q7L622 706 aa5.98□□□□□ -1.45
SCN1A-216ENST00000637968 S100ZQ8WXG8 99 aa5.98□□□□□ -1.45
SCN1A-216ENST00000637968 PMM1Q92871 262 aa5.98□□□□□ -1.45
SCN1A-216ENST00000637968 EFHD1Q9BUP0 239 aa5.98□□□□□ -1.45
SCN1A-216ENST00000637968 TSSK1BQ9BXA7 367 aa5.98□□□□□ -1.45
SCN1A-216ENST00000637968 TEX13BQ9BXU2 312 aa5.98□□□□□ -1.45
SCN1A-216ENST00000637968 IFT22Q9H7X7 185 aa5.98□□□□□ -1.45
SCN1A-216ENST00000637968 CABP5Q9NP86 173 aa5.98□□□□□ -1.45
SCN1A-216ENST00000637968 PI4KBQ9UBF8 816 aa5.98□□□□□ -1.45
SCN1A-216ENST00000637968 IPPQ9Y573 584 aa5.98□□□□□ -1.45
SCN1A-216ENST00000637968 CHD1O14646 1710 aa5.98□□□□□ -1.45
SCN1A-216ENST00000637968 TYW5A2RUC4 315 aaKnown RBP5.97□□□□□ -1.45
SCN1A-216ENST00000637968 SIGLEC16A6NMB1 481 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 PPP1R3GB7ZBB8 358 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 RAD51BO15315 384 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 PJA2O43164 708 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 RIPK2O43353 540 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 NOS1APO75052 506 aaPredicted RBP5.97□□□□□ -1.45
SCN1A-216ENST00000637968 CAMTA2O94983 1202 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 NADKO95544 446 aaPredicted RBP5.97□□□□□ -1.45
SCN1A-216ENST00000637968 CDH2P19022 906 aaPredicted RBP5.97□□□□□ -1.45
SCN1A-216ENST00000637968 AMPD1P23109 780 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 ZAP70P43403 619 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 HAND2P61296 217 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 ASIC1P78348 528 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 METTL2BQ6P1Q9 378 aaKnown RBP5.97□□□□□ -1.45
SCN1A-216ENST00000637968 MAMSTRQ6ZN01 415 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 PRR23BQ6ZRT6 265 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 USP43Q70EL4 1123 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 ILDR1Q86SU0 546 aaPredicted RBP5.97□□□□□ -1.45
SCN1A-216ENST00000637968 JAMLQ86YT9 394 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 SLC38A6Q8IZM9 456 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 FAM172AQ8WUF8 416 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 SLC7A6OSQ96CW6 309 aaPredicted RBP5.97□□□□□ -1.45
SCN1A-216ENST00000637968 MTMR8Q96EF0 704 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 PHACTR3Q96KR7 559 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 UROC1Q96N76 676 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 TMEM109Q9BVC6 243 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 HERC2P3Q9BVR0 1158 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 TRABDQ9H4I3 376 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 BTG4Q9NY30 223 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 TAGLN3Q9UI15 199 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 PLAGL2Q9UPG8 496 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 NEU2Q9Y3R4 380 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 WDR19Q8NEZ3 1342 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 FAM237AA0A1B0GTK4 181 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 A0A1W2PRG6 482 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 J3QRK9 145 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 CTRB1P17538 263 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 TAC1P20366 129 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 HADHAP40939 763 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 ZFP69Q49AA0 526 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 CDONQ4KMG0 1287 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 TCHHL1Q5QJ38 904 aaPredicted RBP5.97□□□□□ -1.45
SCN1A-216ENST00000637968 CTRB2Q6GPI1 263 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 GALNT18Q6P9A2 607 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 TTC33Q6PID6 262 aaPredicted RBP5.97□□□□□ -1.45
SCN1A-216ENST00000637968 WDR59Q6PJI9 974 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 DTHD1Q6ZMT9 781 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 RAVER1Q8IY67 606 aaKnown RBP5.97□□□□□ -1.45
SCN1A-216ENST00000637968 PDPRQ8NCN5 879 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 FBXO25Q8TCJ0 367 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 BCL7CQ8WUZ0 217 aaPredicted RBP5.97□□□□□ -1.45
SCN1A-216ENST00000637968 ANKS1AQ92625 1134 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 SYMPKQ92797 1274 aaKnown RBP5.97□□□□□ -1.45
SCN1A-216ENST00000637968 FAM149B1Q96BN6 582 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 FBXL8Q96CD0 374 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 LPIN3Q9BQK8 851 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 MKRN2Q9H000 416 aaKnown RBP5.97□□□□□ -1.45
SCN1A-216ENST00000637968 KLC2Q9H0B6 622 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 RIC8AQ9NPQ8 531 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 TCF7L2Q9NQB0 619 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 SLC35C2Q9NQQ7 365 aa5.97□□□□□ -1.45
SCN1A-216ENST00000637968 KLHL42Q9P2K6 505 aa5.97□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms