RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 ANO6Q4KMQ2 910 aa19.36■□□□□ 0.69
CLN3-243ENST00000635973 HSP90AA4PQ58FG1 418 aa19.36■□□□□ 0.69
CLN3-243ENST00000635973 WDR44Q5JSH3 913 aa19.36■□□□□ 0.69
CLN3-243ENST00000635973 PDZD4Q76G19 769 aaPredicted RBP19.36■□□□□ 0.69
CLN3-243ENST00000635973 DPH6Q7L8W6 267 aa19.36■□□□□ 0.69
CLN3-243ENST00000635973 TRIM59Q8IWR1 403 aa19.36■□□□□ 0.69
CLN3-243ENST00000635973 SPATA18Q8TC71 538 aa19.36■□□□□ 0.69
CLN3-243ENST00000635973 ENOX1Q8TC92 643 aaKnown RBP19.36■□□□□ 0.69
CLN3-243ENST00000635973 ELMO3Q96BJ8 720 aa19.36■□□□□ 0.69
CLN3-243ENST00000635973 SNX25Q9H3E2 840 aa19.36■□□□□ 0.69
CLN3-243ENST00000635973 VRTNQ9H8Y1 702 aa19.36■□□□□ 0.69
CLN3-243ENST00000635973 AFF4Q9UHB7 1163 aaKnown RBP19.36■□□□□ 0.69
CLN3-243ENST00000635973 NFE2L3Q9Y4A8 694 aa19.36■□□□□ 0.69
CLN3-243ENST00000635973 MYO15AQ9UKN7 3530 aa19.35■□□□□ 0.69
CLN3-243ENST00000635973 SEC24AO95486 1093 aa19.35■□□□□ 0.69
CLN3-243ENST00000635973 ASS1P00966 412 aaKnown RBP19.35■□□□□ 0.69
CLN3-243ENST00000635973 AFPP02771 609 aaKnown RBP19.35■□□□□ 0.69
CLN3-243ENST00000635973 NBL1P41271 181 aa19.35■□□□□ 0.69
CLN3-243ENST00000635973 SPOPLQ6IQ16 392 aa19.35■□□□□ 0.69
CLN3-243ENST00000635973 OR10T2Q8NGX3 314 aa19.35■□□□□ 0.69
CLN3-243ENST00000635973 NKD2Q969F2 451 aaPredicted RBP19.35■□□□□ 0.69
CLN3-243ENST00000635973 SMYD3Q9H7B4 428 aa19.35■□□□□ 0.69
CLN3-243ENST00000635973 AVENQ9NQS1 362 aaPredicted RBP19.35■□□□□ 0.69
CLN3-243ENST00000635973 RAB20Q9NX57 234 aa19.35■□□□□ 0.69
CLN3-243ENST00000635973 PROB1E7EW31 1015 aa19.34■□□□□ 0.69
CLN3-243ENST00000635973 DCNP07585 359 aaKnown RBP19.34■□□□□ 0.69
CLN3-243ENST00000635973 ACAT1P24752 427 aaKnown RBP19.34■□□□□ 0.69
CLN3-243ENST00000635973 PCSK1P29120 753 aa19.34■□□□□ 0.69
CLN3-243ENST00000635973 MYL5Q02045 173 aa19.34■□□□□ 0.69
CLN3-243ENST00000635973 TWF1Q12792 350 aa19.34■□□□□ 0.69
CLN3-243ENST00000635973 KCNH2Q12809 1159 aa19.34■□□□□ 0.69
CLN3-243ENST00000635973 SLC5A9Q2M3M2 681 aa19.34■□□□□ 0.69
CLN3-243ENST00000635973 SLC39A12Q504Y0 691 aa19.34■□□□□ 0.69
CLN3-243ENST00000635973 OSTM1Q86WC4 334 aa19.34■□□□□ 0.69
CLN3-243ENST00000635973 OR6B3Q8NGW1 331 aa19.34■□□□□ 0.69
CLN3-243ENST00000635973 PGLYRP2Q96PD5 576 aa19.34■□□□□ 0.69
CLN3-243ENST00000635973 TMEM209Q96SK2 561 aa19.34■□□□□ 0.69
CLN3-243ENST00000635973 MRPL45Q9BRJ2 306 aaKnown RBP19.34■□□□□ 0.69
CLN3-243ENST00000635973 TACC1O75410 805 aa19.33■□□□□ 0.68
CLN3-243ENST00000635973 ECI2O75521 394 aa19.33■□□□□ 0.68
CLN3-243ENST00000635973 MYL4P12829 197 aa19.33■□□□□ 0.68
CLN3-243ENST00000635973 PRKCSHP14314 528 aaPredicted RBP19.33■□□□□ 0.68
CLN3-243ENST00000635973 CEBPBP17676 345 aa19.33■□□□□ 0.68
CLN3-243ENST00000635973 WARSP23381 471 aaKnown RBP19.33■□□□□ 0.68
CLN3-243ENST00000635973 RAP1GAPP47736 663 aa19.33■□□□□ 0.68
CLN3-243ENST00000635973 STARD6P59095 220 aa19.33■□□□□ 0.68
CLN3-243ENST00000635973 PRKCQQ04759 706 aa19.33■□□□□ 0.68
CLN3-243ENST00000635973 PLD1Q13393 1074 aa19.33■□□□□ 0.68
CLN3-243ENST00000635973 MLF2Q15773 248 aaPredicted RBP19.33■□□□□ 0.68
CLN3-243ENST00000635973 ZSCAN23Q3MJ62 389 aa19.33■□□□□ 0.68
CLN3-243ENST00000635973 SLC44A4Q53GD3 710 aa19.33■□□□□ 0.68
CLN3-243ENST00000635973 RNF19BQ6ZMZ0 732 aa19.33■□□□□ 0.68
CLN3-243ENST00000635973 DCP1BQ8IZD4 617 aaKnown RBP19.33■□□□□ 0.68
CLN3-243ENST00000635973 LEMD2Q8NC56 503 aa19.33■□□□□ 0.68
CLN3-243ENST00000635973 KBTBD7Q8WVZ9 684 aa19.33■□□□□ 0.68
CLN3-243ENST00000635973 SEMA4DQ92854 862 aa19.33■□□□□ 0.68
CLN3-243ENST00000635973 ACBD6Q9BR61 282 aa19.33■□□□□ 0.68
CLN3-243ENST00000635973 NIF3L1Q9GZT8 377 aa19.33■□□□□ 0.68
CLN3-243ENST00000635973 ZCWPW1Q9H0M4 648 aa19.33■□□□□ 0.68
CLN3-243ENST00000635973 ASAH2Q9NR71 780 aa19.33■□□□□ 0.68
CLN3-243ENST00000635973 SAMSN1Q9NSI8 373 aaKnown RBP19.33■□□□□ 0.68
CLN3-243ENST00000635973 KCNJ18B7U540 433 aa19.32■□□□□ 0.68
CLN3-243ENST00000635973 PES1O00541 588 aaKnown RBP19.32■□□□□ 0.68
CLN3-243ENST00000635973 GABRDO14764 452 aa19.32■□□□□ 0.68
CLN3-243ENST00000635973 GNL1P36915 607 aaPredicted RBP19.32■□□□□ 0.68
CLN3-243ENST00000635973 GPR17Q13304 367 aa19.32■□□□□ 0.68
CLN3-243ENST00000635973 KCNJ12Q14500 433 aa19.32■□□□□ 0.68
CLN3-243ENST00000635973 INTS6LQ5JSJ4 861 aaKnown RBP19.32■□□□□ 0.68
CLN3-243ENST00000635973 IRF2BP1Q8IU81 584 aa19.32■□□□□ 0.68
CLN3-243ENST00000635973 AOPEPQ8N6M6 819 aa19.32■□□□□ 0.68
CLN3-243ENST00000635973 PJA1Q8NG27 643 aa19.32■□□□□ 0.68
CLN3-243ENST00000635973 SYT15Q9BQS2 421 aa19.32■□□□□ 0.68
CLN3-243ENST00000635973 FOXQ1Q9C009 403 aa19.32■□□□□ 0.68
CLN3-243ENST00000635973 APOBEC3GQ9HC16 384 aaKnown RBP19.32■□□□□ 0.68
CLN3-243ENST00000635973 ZFP14Q9HCL3 533 aa19.32■□□□□ 0.68
CLN3-243ENST00000635973 KANSL1LA0AUZ9 987 aa19.31■□□□□ 0.68
CLN3-243ENST00000635973 A8MXQ7 604 aa19.31■□□□□ 0.68
CLN3-243ENST00000635973 P4HA2O15460 535 aa19.31■□□□□ 0.68
CLN3-243ENST00000635973 HCRTO43612 131 aa19.31■□□□□ 0.68
CLN3-243ENST00000635973 MICAL2O94851 1124 aa19.31■□□□□ 0.68
CLN3-243ENST00000635973 PDGFRBP09619 1106 aa19.31■□□□□ 0.68
CLN3-243ENST00000635973 FAM163BP0C2L3 166 aa19.31■□□□□ 0.68
CLN3-243ENST00000635973 EEF1GP26641 437 aaKnown RBP19.31■□□□□ 0.68
CLN3-243ENST00000635973 ASPAP45381 313 aa19.31■□□□□ 0.68
CLN3-243ENST00000635973 ALDH1A3P47895 512 aa19.31■□□□□ 0.68
CLN3-243ENST00000635973 EPHB3P54753 998 aa19.31■□□□□ 0.68
CLN3-243ENST00000635973 CDH8P55286 799 aa19.31■□□□□ 0.68
CLN3-243ENST00000635973 PSMC1P62191 440 aaKnown RBP19.31■□□□□ 0.68
CLN3-243ENST00000635973 UBXN2BQ14CS0 331 aa19.31■□□□□ 0.68
CLN3-243ENST00000635973 MAN2A1Q16706 1144 aa19.31■□□□□ 0.68
CLN3-243ENST00000635973 PRSS36Q5K4E3 855 aa19.31■□□□□ 0.68
CLN3-243ENST00000635973 LIMS2Q7Z4I7 341 aa19.31■□□□□ 0.68
CLN3-243ENST00000635973 ANKRD20A12PQ8NF67 263 aa19.31■□□□□ 0.68
CLN3-243ENST00000635973 ELSPBP1Q96BH3 223 aa19.31■□□□□ 0.68
CLN3-243ENST00000635973 TCEAL4Q96EI5 215 aa19.31■□□□□ 0.68
CLN3-243ENST00000635973 BCO2Q9BYV7 579 aa19.31■□□□□ 0.68
CLN3-243ENST00000635973 ABI2Q9NYB9 513 aaPredicted RBP19.31■□□□□ 0.68
CLN3-243ENST00000635973 CDH9Q9ULB4 789 aa19.31■□□□□ 0.68
CLN3-243ENST00000635973 COQ4Q9Y3A0 265 aa19.31■□□□□ 0.68
CLN3-243ENST00000635973 DMDP11532 3685 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms