RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 PI15O43692 258 aa13.53□□□□□ -0.24
PNKP-217ENST00000625216 GNA14O95837 355 aa13.53□□□□□ -0.24
PNKP-217ENST00000625216 KRT19P08727 400 aa13.53□□□□□ -0.24
PNKP-217ENST00000625216 EPB41P11171 864 aaKnown RBP13.53□□□□□ -0.24
PNKP-217ENST00000625216 MYL4P12829 197 aa13.53□□□□□ -0.24
PNKP-217ENST00000625216 PRKCSHP14314 528 aaPredicted RBP13.53□□□□□ -0.24
PNKP-217ENST00000625216 LHX1P48742 406 aa13.53□□□□□ -0.24
PNKP-217ENST00000625216 STARD6P59095 220 aa13.53□□□□□ -0.24
PNKP-217ENST00000625216 TSPY1Q01534 308 aa13.53□□□□□ -0.24
PNKP-217ENST00000625216 VEPH1Q14D04 833 aa13.53□□□□□ -0.24
PNKP-217ENST00000625216 SNRNP35Q16560 246 aaKnown RBP13.53□□□□□ -0.24
PNKP-217ENST00000625216 NFE2Q16621 373 aaPredicted RBP13.53□□□□□ -0.24
PNKP-217ENST00000625216 SLC44A4Q53GD3 710 aa13.53□□□□□ -0.24
PNKP-217ENST00000625216 FAM78AQ5JUQ0 283 aa13.53□□□□□ -0.24
PNKP-217ENST00000625216 TANGO2Q6ICL3 276 aa13.53□□□□□ -0.24
PNKP-217ENST00000625216 TMC6Q7Z403 805 aa13.53□□□□□ -0.24
PNKP-217ENST00000625216 DNAJB7Q7Z6W7 309 aaPredicted RBP13.53□□□□□ -0.24
PNKP-217ENST00000625216 WDR49Q8IV35 697 aa13.53□□□□□ -0.24
PNKP-217ENST00000625216 FAM186BQ8IYM0 893 aa13.53□□□□□ -0.24
PNKP-217ENST00000625216 TOP6BLQ8N6T0 577 aa13.53□□□□□ -0.24
PNKP-217ENST00000625216 TMEM174Q8WUU8 243 aa13.53□□□□□ -0.24
PNKP-217ENST00000625216 SMARCD2Q92925 531 aa13.53□□□□□ -0.24
PNKP-217ENST00000625216 E2F7Q96AV8 911 aa13.53□□□□□ -0.24
PNKP-217ENST00000625216 ASB16Q96NS5 453 aa13.53□□□□□ -0.24
PNKP-217ENST00000625216 TMEM209Q96SK2 561 aa13.53□□□□□ -0.24
PNKP-217ENST00000625216 KXD1Q9BQD3 176 aa13.53□□□□□ -0.24
PNKP-217ENST00000625216 ACBD6Q9BR61 282 aa13.53□□□□□ -0.24
PNKP-217ENST00000625216 MKNK1Q9BUB5 465 aa13.53□□□□□ -0.24
PNKP-217ENST00000625216 LRRC3Q9BY71 257 aa13.53□□□□□ -0.24
PNKP-217ENST00000625216 TBC1D17Q9HA65 648 aa13.53□□□□□ -0.24
PNKP-217ENST00000625216 TRPV4Q9HBA0 871 aa13.53□□□□□ -0.24
PNKP-217ENST00000625216 CACNA1HO95180 2353 aa13.52□□□□□ -0.24
PNKP-217ENST00000625216 MOSPD3O75425 235 aa13.52□□□□□ -0.25
PNKP-217ENST00000625216 FAM163BP0C2L3 166 aa13.52□□□□□ -0.25
PNKP-217ENST00000625216 MYL7Q01449 175 aa13.52□□□□□ -0.25
PNKP-217ENST00000625216 BFSP1Q12934 665 aa13.52□□□□□ -0.25
PNKP-217ENST00000625216 PSMD6Q15008 389 aa13.52□□□□□ -0.25
PNKP-217ENST00000625216 MGAT5BQ3V5L5 792 aa13.52□□□□□ -0.25
PNKP-217ENST00000625216 FILIP1LQ4L180 1135 aa13.52□□□□□ -0.25
PNKP-217ENST00000625216 LRRTM3Q86VH5 581 aa13.52□□□□□ -0.25
PNKP-217ENST00000625216 TMC8Q8IU68 726 aa13.52□□□□□ -0.25
PNKP-217ENST00000625216 CCDC105Q8IYK2 499 aa13.52□□□□□ -0.25
PNKP-217ENST00000625216 PDCL2Q8N4E4 241 aa13.52□□□□□ -0.25
PNKP-217ENST00000625216 DTWD2Q8NBA8 298 aa13.52□□□□□ -0.25
PNKP-217ENST00000625216 ST13P5Q8NFI4 369 aaPredicted RBP13.52□□□□□ -0.25
PNKP-217ENST00000625216 ATOH1Q92858 354 aaPredicted RBP13.52□□□□□ -0.25
PNKP-217ENST00000625216 FNBP1Q96RU3 617 aa13.52□□□□□ -0.25
PNKP-217ENST00000625216 MTMR12Q9C0I1 747 aa13.52□□□□□ -0.25
PNKP-217ENST00000625216 SIX4Q9UIU6 781 aa13.52□□□□□ -0.25
PNKP-217ENST00000625216 L1RE1Q9UN81 338 aa13.52□□□□□ -0.25
PNKP-217ENST00000625216 SIT1Q9Y3P8 196 aa13.52□□□□□ -0.25
PNKP-217ENST00000625216 PCDHB5Q9Y5E4 795 aa13.52□□□□□ -0.25
PNKP-217ENST00000625216 SNX9Q9Y5X1 595 aa13.52□□□□□ -0.25
PNKP-217ENST00000625216 H0Y858 1186 aa13.51□□□□□ -0.25
PNKP-217ENST00000625216 GABRDO14764 452 aa13.51□□□□□ -0.25
PNKP-217ENST00000625216 EXOC3O60645 756 aa13.51□□□□□ -0.25
PNKP-217ENST00000625216 TPM3P06753 285 aa13.51□□□□□ -0.25
PNKP-217ENST00000625216 HAPLN1P10915 354 aaPredicted RBP13.51□□□□□ -0.25
PNKP-217ENST00000625216 FCARP24071 287 aa13.51□□□□□ -0.25
PNKP-217ENST00000625216 PCSK1P29120 753 aa13.51□□□□□ -0.25
PNKP-217ENST00000625216 PSMC2P35998 433 aaKnown RBP13.51□□□□□ -0.25
PNKP-217ENST00000625216 MLF2Q15773 248 aaPredicted RBP13.51□□□□□ -0.25
PNKP-217ENST00000625216 VWA3BQ502W6 1294 aa13.51□□□□□ -0.25
PNKP-217ENST00000625216 POTEHQ6S545 545 aa13.51□□□□□ -0.25
PNKP-217ENST00000625216 TRAPPC11Q7Z392 1133 aa13.51□□□□□ -0.25
PNKP-217ENST00000625216 LIMS2Q7Z4I7 341 aa13.51□□□□□ -0.25
PNKP-217ENST00000625216 FRMD5Q7Z6J6 570 aa13.51□□□□□ -0.25
PNKP-217ENST00000625216 ALYREFQ86V81 257 aaKnown RBP13.51□□□□□ -0.25
PNKP-217ENST00000625216 RDH13Q8NBN7 331 aa13.51□□□□□ -0.25
PNKP-217ENST00000625216 OR5B17Q8NGF7 314 aa13.51□□□□□ -0.25
PNKP-217ENST00000625216 SHKBP1Q8TBC3 707 aa13.51□□□□□ -0.25
PNKP-217ENST00000625216 ZSCAN18Q8TBC5 510 aaPredicted RBP13.51□□□□□ -0.25
PNKP-217ENST00000625216 PLEKHO2Q8TD55 490 aa13.51□□□□□ -0.25
PNKP-217ENST00000625216 DEPDC1BQ8WUY9 529 aa13.51□□□□□ -0.25
PNKP-217ENST00000625216 DNASE1L2Q92874 299 aa13.51□□□□□ -0.25
PNKP-217ENST00000625216 HPDLQ96IR7 371 aa13.51□□□□□ -0.25
PNKP-217ENST00000625216 NELL2Q99435 816 aa13.51□□□□□ -0.25
PNKP-217ENST00000625216 SEPT5Q99719 369 aaPredicted RBP13.51□□□□□ -0.25
PNKP-217ENST00000625216 DDX23Q9BUQ8 820 aaKnown RBP13.51□□□□□ -0.25
PNKP-217ENST00000625216 TRMT61BQ9BVS5 477 aaKnown RBP13.51□□□□□ -0.25
PNKP-217ENST00000625216 OSBPL6Q9BZF3 934 aa13.51□□□□□ -0.25
PNKP-217ENST00000625216 PLA2G2FQ9BZM2 168 aa13.51□□□□□ -0.25
PNKP-217ENST00000625216 METTL14Q9HCE5 456 aaKnown RBP13.51□□□□□ -0.25
PNKP-217ENST00000625216 ABCB6Q9NP58 842 aa13.51□□□□□ -0.25
PNKP-217ENST00000625216 TRPV5Q9NQA5 729 aa13.51□□□□□ -0.25
PNKP-217ENST00000625216 DDX43Q9NXZ2 648 aaKnown RBP13.51□□□□□ -0.25
PNKP-217ENST00000625216 ARMCX3Q9UH62 379 aaPredicted RBP13.51□□□□□ -0.25
PNKP-217ENST00000625216 ZMYM5Q9UJ78 669 aa13.51□□□□□ -0.25
PNKP-217ENST00000625216 ITIH6Q6UXX5 1313 aa13.5□□□□□ -0.25
PNKP-217ENST00000625216 A0A1W2PRU2 124 aa13.5□□□□□ -0.25
PNKP-217ENST00000625216 KANSL1LA0AUZ9 987 aa13.5□□□□□ -0.25
PNKP-217ENST00000625216 PES1O00541 588 aaKnown RBP13.5□□□□□ -0.25
PNKP-217ENST00000625216 TPM2P07951 284 aa13.5□□□□□ -0.25
PNKP-217ENST00000625216 PSMC3P17980 439 aa13.5□□□□□ -0.25
PNKP-217ENST00000625216 TNNI1P19237 187 aa13.5□□□□□ -0.25
PNKP-217ENST00000625216 WEE1P30291 646 aa13.5□□□□□ -0.25
PNKP-217ENST00000625216 CDC25CP30307 473 aa13.5□□□□□ -0.25
PNKP-217ENST00000625216 AP3M2P53677 418 aa13.5□□□□□ -0.25
PNKP-217ENST00000625216 UBXN1Q04323 297 aa13.5□□□□□ -0.25
PNKP-217ENST00000625216 CYP24A1Q07973 514 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms