RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 C2CD2LO14523 706 aa16.56■□□□□ 0.24
CPSF1-213ENST00000620219 TJP3O95049 919 aa16.56■□□□□ 0.24
CPSF1-213ENST00000620219 HSPA6P17066 643 aa16.56■□□□□ 0.24
CPSF1-213ENST00000620219 SLC1A1P43005 524 aa16.56■□□□□ 0.24
CPSF1-213ENST00000620219 C1orf228Q6PIY5 440 aa16.56■□□□□ 0.24
CPSF1-213ENST00000620219 OR2W6PQ8NHA6 318 aa16.56■□□□□ 0.24
CPSF1-213ENST00000620219 HCRTO43612 131 aa16.55■□□□□ 0.24
CPSF1-213ENST00000620219 SEPT7Q16181 437 aaKnown RBP16.55■□□□□ 0.24
CPSF1-213ENST00000620219 DARS2Q6PI48 645 aaKnown RBP16.55■□□□□ 0.24
CPSF1-213ENST00000620219 B4GALNT4Q76KP1 1039 aa16.55■□□□□ 0.24
CPSF1-213ENST00000620219 GRK7Q8WTQ7 553 aa16.55■□□□□ 0.24
CPSF1-213ENST00000620219 TWNKQ96RR1 684 aa16.55■□□□□ 0.24
CPSF1-213ENST00000620219 FMO2Q99518 471 aa16.55■□□□□ 0.24
CPSF1-213ENST00000620219 TARSL2A2RTX5 802 aaKnown RBP16.55■□□□□ 0.24
CPSF1-213ENST00000620219 GOLGA8MH3BSY2 632 aa16.55■□□□□ 0.24
CPSF1-213ENST00000620219 PROSCO94903 275 aa16.55■□□□□ 0.24
CPSF1-213ENST00000620219 RFC1P35251 1148 aaPredicted RBP16.55■□□□□ 0.24
CPSF1-213ENST00000620219 ZNF296Q8WUU4 475 aaPredicted RBP16.55■□□□□ 0.24
CPSF1-213ENST00000620219 AP1G2O75843 785 aa16.55■□□□□ 0.24
CPSF1-213ENST00000620219 KRT14P02533 472 aa16.55■□□□□ 0.24
CPSF1-213ENST00000620219 GRIK1P39086 918 aa16.55■□□□□ 0.24
CPSF1-213ENST00000620219 MAMLD1Q13495 774 aa16.55■□□□□ 0.24
CPSF1-213ENST00000620219 C9orf57Q5W0N0 161 aa16.55■□□□□ 0.24
CPSF1-213ENST00000620219 SLC13A5Q86YT5 568 aaPredicted RBP16.55■□□□□ 0.24
CPSF1-213ENST00000620219 SELENOSQ9BQE4 189 aa16.55■□□□□ 0.24
CPSF1-213ENST00000620219 ABI2Q9NYB9 513 aaPredicted RBP16.55■□□□□ 0.24
CPSF1-213ENST00000620219 SIX4Q9UIU6 781 aa16.55■□□□□ 0.24
CPSF1-213ENST00000620219 CLDN5O00501 218 aa16.55■□□□□ 0.24
CPSF1-213ENST00000620219 PODXLO00592 558 aa16.55■□□□□ 0.24
CPSF1-213ENST00000620219 TM4SF4P48230 202 aa16.55■□□□□ 0.24
CPSF1-213ENST00000620219 BASP1P80723 227 aaKnown RBP16.55■□□□□ 0.24
CPSF1-213ENST00000620219 C1QBPQ07021 282 aaKnown RBP16.55■□□□□ 0.24
CPSF1-213ENST00000620219 PPP1R26Q5T8A7 1209 aaPredicted RBP16.55■□□□□ 0.24
CPSF1-213ENST00000620219 SIK2Q9H0K1 926 aa16.55■□□□□ 0.24
CPSF1-213ENST00000620219 WDR35Q9P2L0 1181 aa16.55■□□□□ 0.24
CPSF1-213ENST00000620219 KIF3CO14782 793 aa16.54■□□□□ 0.24
CPSF1-213ENST00000620219 BRCC3P46736 316 aa16.54■□□□□ 0.24
CPSF1-213ENST00000620219 PIGHQ14442 188 aaPredicted RBP16.54■□□□□ 0.24
CPSF1-213ENST00000620219 WDR93Q6P2C0 686 aa16.54■□□□□ 0.24
CPSF1-213ENST00000620219 TRPV1Q8NER1 839 aa16.54■□□□□ 0.24
CPSF1-213ENST00000620219 RXFP2Q8WXD0 754 aa16.54■□□□□ 0.24
CPSF1-213ENST00000620219 ZMAT2Q96NC0 199 aaKnown RBP16.54■□□□□ 0.24
CPSF1-213ENST00000620219 PLEKHA5Q9HAU0 1116 aa16.54■□□□□ 0.24
CPSF1-213ENST00000620219 MRPL42Q9Y6G3 142 aaKnown RBP16.54■□□□□ 0.24
CPSF1-213ENST00000620219 MCF2LO15068 1137 aa16.54■□□□□ 0.24
CPSF1-213ENST00000620219 KRT7P08729 469 aa16.54■□□□□ 0.24
CPSF1-213ENST00000620219 SLCO1A2P46721 670 aa16.54■□□□□ 0.24
CPSF1-213ENST00000620219 FAM76AQ8TAV0 307 aa16.54■□□□□ 0.24
CPSF1-213ENST00000620219 FAM114A2Q9NRY5 505 aa16.54■□□□□ 0.24
CPSF1-213ENST00000620219 TJP2Q9UDY2 1190 aa16.54■□□□□ 0.24
CPSF1-213ENST00000620219 PCDHB7Q9Y5E2 793 aa16.54■□□□□ 0.24
CPSF1-213ENST00000620219 MEIS3P2A8K0S8 358 aa16.54■□□□□ 0.24
CPSF1-213ENST00000620219 MOCS2O96007 188 aaPredicted RBP16.54■□□□□ 0.24
CPSF1-213ENST00000620219 ARL4AP40617 200 aa16.54■□□□□ 0.24
CPSF1-213ENST00000620219 MAGED2Q9UNF1 606 aaPredicted RBP16.54■□□□□ 0.24
CPSF1-213ENST00000620219 PTCH2Q9Y6C5 1203 aa16.54■□□□□ 0.24
CPSF1-213ENST00000620219 ADGRA2Q96PE1 1338 aa16.53■□□□□ 0.24
CPSF1-213ENST00000620219 FAM200BP0CF97 657 aa16.53■□□□□ 0.24
CPSF1-213ENST00000620219 POU5F1BQ06416 359 aa16.53■□□□□ 0.24
CPSF1-213ENST00000620219 STILQ15468 1287 aa16.53■□□□□ 0.24
CPSF1-213ENST00000620219 PTPN20Q4JDL3 420 aa16.53■□□□□ 0.24
CPSF1-213ENST00000620219 DENND2CQ68D51 928 aa16.53■□□□□ 0.24
CPSF1-213ENST00000620219 B3GNT5Q9BYG0 378 aa16.53■□□□□ 0.24
CPSF1-213ENST00000620219 VPS37BQ9H9H4 285 aa16.53■□□□□ 0.24
CPSF1-213ENST00000620219 KRT82Q9NSB4 513 aa16.53■□□□□ 0.24
CPSF1-213ENST00000620219 ANAPC5Q9UJX4 755 aa16.53■□□□□ 0.24
CPSF1-213ENST00000620219 ASPAP45381 313 aa16.53■□□□□ 0.24
CPSF1-213ENST00000620219 RABGGTBP53611 331 aa16.53■□□□□ 0.24
CPSF1-213ENST00000620219 RAD23BP54727 409 aa16.53■□□□□ 0.24
CPSF1-213ENST00000620219 PDCLQ13371 301 aa16.53■□□□□ 0.24
CPSF1-213ENST00000620219 GLE1Q53GS7 698 aaKnown RBP16.53■□□□□ 0.24
CPSF1-213ENST00000620219 PGLYRP2Q96PD5 576 aa16.53■□□□□ 0.24
CPSF1-213ENST00000620219 HPCAL4Q9UM19 191 aa16.53■□□□□ 0.24
CPSF1-213ENST00000620219 ATP8B1O43520 1251 aa16.53■□□□□ 0.24
CPSF1-213ENST00000620219 LSM8O95777 96 aaKnown RBP16.53■□□□□ 0.24
CPSF1-213ENST00000620219 GPD1P21695 349 aa16.53■□□□□ 0.24
CPSF1-213ENST00000620219 CHRNA3P32297 505 aa16.53■□□□□ 0.24
CPSF1-213ENST00000620219 NUMBP49757 651 aa16.53■□□□□ 0.24
CPSF1-213ENST00000620219 GJA9P57773 515 aa16.53■□□□□ 0.24
CPSF1-213ENST00000620219 KRT17Q04695 432 aa16.53■□□□□ 0.24
CPSF1-213ENST00000620219 PPP2R5DQ14738 602 aa16.53■□□□□ 0.24
CPSF1-213ENST00000620219 ZNF618Q5T7W0 954 aa16.53■□□□□ 0.24
CPSF1-213ENST00000620219 SH2D3CQ8N5H7 860 aa16.53■□□□□ 0.24
CPSF1-213ENST00000620219 SNX27Q96L92 541 aa16.53■□□□□ 0.24
CPSF1-213ENST00000620219 CPXM1Q96SM3 734 aa16.53■□□□□ 0.24
CPSF1-213ENST00000620219 PAIP2Q9BPZ3 127 aaKnown RBP16.53■□□□□ 0.24
CPSF1-213ENST00000620219 ZBED2Q9BTP6 218 aa16.53■□□□□ 0.24
CPSF1-213ENST00000620219 DPEP3Q9H4B8 488 aa16.53■□□□□ 0.24
CPSF1-213ENST00000620219 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.53■□□□□ 0.24
CPSF1-213ENST00000620219 DCDC2CA8MYV0 355 aa16.53■□□□□ 0.24
CPSF1-213ENST00000620219 CST8O60676 142 aa16.53■□□□□ 0.24
CPSF1-213ENST00000620219 CYBAP13498 195 aa16.53■□□□□ 0.24
CPSF1-213ENST00000620219 C15orf59Q2T9L4 293 aaPredicted RBP16.53■□□□□ 0.24
CPSF1-213ENST00000620219 NT5DC4Q86YG4 428 aa16.53■□□□□ 0.24
CPSF1-213ENST00000620219 SPATA2LQ8IUW3 424 aaPredicted RBP16.53■□□□□ 0.24
CPSF1-213ENST00000620219 KATNBL1Q9H079 304 aa16.53■□□□□ 0.24
CPSF1-213ENST00000620219 ADAM21Q9UKJ8 722 aa16.53■□□□□ 0.24
CPSF1-213ENST00000620219 TCRBV7S2A1N4TA0A589 114 aa16.52■□□□□ 0.24
CPSF1-213ENST00000620219 ATP2C2O75185 946 aa16.52■□□□□ 0.24
CPSF1-213ENST00000620219 ACSL3O95573 720 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms