RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 AAK1Q2M2I8 961 aa14.38□□□□□ -0.11
LINC00540-202ENST00000616974 TCP11X2Q5H9J9 407 aa14.38□□□□□ -0.11
LINC00540-202ENST00000616974 ATAT1Q5SQI0 421 aa14.38□□□□□ -0.11
LINC00540-202ENST00000616974 APTXQ7Z2E3 356 aaKnown RBP14.38□□□□□ -0.11
LINC00540-202ENST00000616974 CMASQ8NFW8 434 aaPredicted RBP14.38□□□□□ -0.11
LINC00540-202ENST00000616974 TUBGCP2Q9BSJ2 902 aa14.38□□□□□ -0.11
LINC00540-202ENST00000616974 VPS16Q9H269 839 aa14.38□□□□□ -0.11
LINC00540-202ENST00000616974 WDR6Q9NNW5 1121 aaKnown RBP14.38□□□□□ -0.11
LINC00540-202ENST00000616974 CISHQ9NSE2 258 aa14.38□□□□□ -0.11
LINC00540-202ENST00000616974 GCNT4Q9P109 453 aa14.38□□□□□ -0.11
LINC00540-202ENST00000616974 LRG1P02750 347 aa14.38□□□□□ -0.11
LINC00540-202ENST00000616974 HAPLN1P10915 354 aaPredicted RBP14.38□□□□□ -0.11
LINC00540-202ENST00000616974 CEBPBP17676 345 aa14.38□□□□□ -0.11
LINC00540-202ENST00000616974 INCA1Q0VD86 236 aa14.38□□□□□ -0.11
LINC00540-202ENST00000616974 TMC8Q8IU68 726 aa14.38□□□□□ -0.11
LINC00540-202ENST00000616974 FUKQ8N0W3 1084 aa14.38□□□□□ -0.11
LINC00540-202ENST00000616974 UBR7Q8N806 425 aa14.38□□□□□ -0.11
LINC00540-202ENST00000616974 MYCBPAPQ8TBZ2 947 aa14.38□□□□□ -0.11
LINC00540-202ENST00000616974 ZSWIM3Q96MP5 696 aa14.38□□□□□ -0.11
LINC00540-202ENST00000616974 ZSWIM1Q9BR11 485 aa14.38□□□□□ -0.11
LINC00540-202ENST00000616974 RPP25Q9BUL9 199 aaKnown RBP14.38□□□□□ -0.11
LINC00540-202ENST00000616974 PHF7Q9BWX1 381 aaPredicted RBP14.38□□□□□ -0.11
LINC00540-202ENST00000616974 INTS2Q9H0H0 1204 aaKnown RBP14.38□□□□□ -0.11
LINC00540-202ENST00000616974 SIX2Q9NPC8 291 aa14.38□□□□□ -0.11
LINC00540-202ENST00000616974 CDH9Q9ULB4 789 aa14.38□□□□□ -0.11
LINC00540-202ENST00000616974 ATG2BQ96BY7 2078 aa14.37□□□□□ -0.11
LINC00540-202ENST00000616974 FSD2A1L4K1 749 aa14.37□□□□□ -0.11
LINC00540-202ENST00000616974 PRKCSHP14314 528 aaPredicted RBP14.37□□□□□ -0.11
LINC00540-202ENST00000616974 PCSK1P29120 753 aa14.37□□□□□ -0.11
LINC00540-202ENST00000616974 KCNMA1Q12791 1236 aa14.37□□□□□ -0.11
LINC00540-202ENST00000616974 CUL2Q13617 745 aa14.37□□□□□ -0.11
LINC00540-202ENST00000616974 GAREM2Q75VX8 874 aa14.37□□□□□ -0.11
LINC00540-202ENST00000616974 TMEM150AQ86TG1 271 aa14.37□□□□□ -0.11
LINC00540-202ENST00000616974 SCN4BQ8IWT1 228 aa14.37□□□□□ -0.11
LINC00540-202ENST00000616974 ADHFE1Q8IWW8 467 aa14.37□□□□□ -0.11
LINC00540-202ENST00000616974 PPM1KQ8N3J5 372 aa14.37□□□□□ -0.11
LINC00540-202ENST00000616974 SLC4A11Q8NBS3 891 aa14.37□□□□□ -0.11
LINC00540-202ENST00000616974 SLC2A14Q8TDB8 520 aa14.37□□□□□ -0.11
LINC00540-202ENST00000616974 HDAC7Q8WUI4 952 aa14.37□□□□□ -0.11
LINC00540-202ENST00000616974 IMPG2Q9BZV3 1241 aa14.37□□□□□ -0.11
LINC00540-202ENST00000616974 PCDHB5Q9Y5E4 795 aa14.37□□□□□ -0.11
LINC00540-202ENST00000616974 KIF26AQ9ULI4 1882 aaPredicted RBP14.37□□□□□ -0.11
LINC00540-202ENST00000616974 F8VP50 259 aa14.36□□□□□ -0.11
LINC00540-202ENST00000616974 GNA14O95837 355 aa14.36□□□□□ -0.11
LINC00540-202ENST00000616974 ZNF18P17022 549 aa14.36□□□□□ -0.11
LINC00540-202ENST00000616974 HMGA1P17096 107 aaKnown RBP14.36□□□□□ -0.11
LINC00540-202ENST00000616974 ACO1P21399 889 aaKnown RBP14.36□□□□□ -0.11
LINC00540-202ENST00000616974 ADORA2BP29275 332 aa14.36□□□□□ -0.11
LINC00540-202ENST00000616974 PGFP49763 221 aa14.36□□□□□ -0.11
LINC00540-202ENST00000616974 RAD23BP54727 409 aa14.36□□□□□ -0.11
LINC00540-202ENST00000616974 IQCB1Q15051 598 aa14.36□□□□□ -0.11
LINC00540-202ENST00000616974 UVSSAQ2YD98 709 aa14.36□□□□□ -0.11
LINC00540-202ENST00000616974 PABPC1LQ4VXU2 614 aaKnown RBP14.36□□□□□ -0.11
LINC00540-202ENST00000616974 CCDC149Q6ZUS6 474 aa14.36□□□□□ -0.11
LINC00540-202ENST00000616974 LUZP1Q86V48 1076 aa14.36□□□□□ -0.11
LINC00540-202ENST00000616974 EHBP1Q8NDI1 1231 aa14.36□□□□□ -0.11
LINC00540-202ENST00000616974 ZMIZ2Q8NF64 920 aa14.36□□□□□ -0.11
LINC00540-202ENST00000616974 TAF4BQ92750 862 aa14.36□□□□□ -0.11
LINC00540-202ENST00000616974 NDST4Q9H3R1 872 aa14.36□□□□□ -0.11
LINC00540-202ENST00000616974 DACH1Q9UI36 760 aa14.36□□□□□ -0.11
LINC00540-202ENST00000616974 A0A1W2PRU2 124 aa14.36□□□□□ -0.11
LINC00540-202ENST00000616974 LOC730098B7Z3J9 87 aa14.36□□□□□ -0.11
LINC00540-202ENST00000616974 TULP2O00295 520 aa14.36□□□□□ -0.11
LINC00540-202ENST00000616974 EPHB6O15197 1021 aa14.36□□□□□ -0.11
LINC00540-202ENST00000616974 TADA3O75528 432 aa14.36□□□□□ -0.11
LINC00540-202ENST00000616974 HNRNPA1P09651 372 aaKnown RBP eCLIP14.36□□□□□ -0.11
LINC00540-202ENST00000616974 MYL4P12829 197 aa14.36□□□□□ -0.11
LINC00540-202ENST00000616974 PAX3P23760 479 aa14.36□□□□□ -0.11
LINC00540-202ENST00000616974 MYL5Q02045 173 aa14.36□□□□□ -0.11
LINC00540-202ENST00000616974 PLD1Q13393 1074 aa14.36□□□□□ -0.11
LINC00540-202ENST00000616974 PRSS36Q5K4E3 855 aa14.36□□□□□ -0.11
LINC00540-202ENST00000616974 PPP1R26Q5T8A7 1209 aaPredicted RBP14.36□□□□□ -0.11
LINC00540-202ENST00000616974 TRIM65Q6PJ69 517 aa14.36□□□□□ -0.11
LINC00540-202ENST00000616974 GPRIN1Q7Z2K8 1008 aa14.36□□□□□ -0.11
LINC00540-202ENST00000616974 DNAJB7Q7Z6W7 309 aaPredicted RBP14.36□□□□□ -0.11
LINC00540-202ENST00000616974 SPATA2LQ8IUW3 424 aaPredicted RBP14.36□□□□□ -0.11
LINC00540-202ENST00000616974 DCP1BQ8IZD4 617 aaKnown RBP14.36□□□□□ -0.11
LINC00540-202ENST00000616974 FGF13Q92913 245 aa14.36□□□□□ -0.11
LINC00540-202ENST00000616974 JAKMIP2Q96AA8 810 aa14.36□□□□□ -0.11
LINC00540-202ENST00000616974 IL21Q9HBE4 155 aa14.36□□□□□ -0.11
LINC00540-202ENST00000616974 LIMD1Q9UGP4 676 aa14.36□□□□□ -0.11
LINC00540-202ENST00000616974 MAGED2Q9UNF1 606 aaPredicted RBP14.36□□□□□ -0.11
LINC00540-202ENST00000616974 C19orf67A6NJJ6 358 aa14.35□□□□□ -0.11
LINC00540-202ENST00000616974 PES1O00541 588 aaKnown RBP14.35□□□□□ -0.11
LINC00540-202ENST00000616974 STX10O60499 249 aa14.35□□□□□ -0.11
LINC00540-202ENST00000616974 PON1P27169 355 aa14.35□□□□□ -0.11
LINC00540-202ENST00000616974 HOXA9P31269 272 aa14.35□□□□□ -0.11
LINC00540-202ENST00000616974 CYP4F8P98187 520 aa14.35□□□□□ -0.11
LINC00540-202ENST00000616974 IFRD2Q12894 506 aaPredicted RBP14.35□□□□□ -0.11
LINC00540-202ENST00000616974 MAN2A1Q16706 1144 aa14.35□□□□□ -0.11
LINC00540-202ENST00000616974 CFAP221Q4G0U5 840 aa14.35□□□□□ -0.11
LINC00540-202ENST00000616974 VWA3BQ502W6 1294 aa14.35□□□□□ -0.11
LINC00540-202ENST00000616974 FAM35AQ86V20 835 aa14.35□□□□□ -0.11
LINC00540-202ENST00000616974 NPAS3Q8IXF0 933 aa14.35□□□□□ -0.11
LINC00540-202ENST00000616974 GJD3Q8N144 294 aa14.35□□□□□ -0.11
LINC00540-202ENST00000616974 SCAMP5Q8TAC9 235 aa14.35□□□□□ -0.11
LINC00540-202ENST00000616974 SHKBP1Q8TBC3 707 aa14.35□□□□□ -0.11
LINC00540-202ENST00000616974 SPPL2BQ8TCT7 592 aa14.35□□□□□ -0.11
LINC00540-202ENST00000616974 TFAP2BQ92481 460 aa14.35□□□□□ -0.11
LINC00540-202ENST00000616974 FGF14Q92915 247 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms