RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 MTMR12Q9C0I1 747 aa13.19□□□□□ -0.3
LIG1-221ENST00000613670 KLC2Q9H0B6 622 aa13.19□□□□□ -0.3
LIG1-221ENST00000613670 VPS11Q9H270 941 aa13.19□□□□□ -0.3
LIG1-221ENST00000613670 SMYD2Q9NRG4 433 aa13.19□□□□□ -0.3
LIG1-221ENST00000613670 CFHP08603 1231 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 AQP5P55064 265 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 RNF220Q5VTB9 566 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 DSTYKQ6XUX3 929 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 MAP4K3Q8IVH8 894 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 C4orf19Q8IY42 314 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 CCNYQ8ND76 341 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 LRRN4Q8WUT4 740 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 ZCWPW1Q9H0M4 648 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 NRBP2Q9NSY0 501 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 NMRK1Q9NWW6 199 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 ZNF70Q9UC06 446 aaPredicted RBP13.18□□□□□ -0.3
LIG1-221ENST00000613670 ACTL7BQ9Y614 415 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 ROBO1Q9Y6N7 1651 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 ASMTLO95671 621 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 ICAM1P05362 532 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 ATP6V1C1P21283 382 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 GLRA2P23416 452 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 SKIV2L2P42285 1042 aaKnown RBP13.18□□□□□ -0.3
LIG1-221ENST00000613670 SLC34A1Q06495 639 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 DGKZQ13574 1117 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 HIC1Q14526 733 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 EMC2Q15006 297 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 ZCCHC23Q6ZST2 131 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 NME8Q8N427 588 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 MAB21L3Q8N8X9 362 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 C12orf50Q8NA57 414 aaPredicted RBP13.18□□□□□ -0.3
LIG1-221ENST00000613670 TTC16Q8NEE8 873 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 TIPINQ9BVW5 301 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 IDI2Q9BXS1 227 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 PCDH9Q9HC56 1237 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 SHOC2Q9UQ13 582 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 LRCH1Q9Y2L9 728 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 TPBGLP0DKB5 382 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 ADSSP30520 456 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 RANBP1P43487 201 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 MYL6P60660 151 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 STX3Q13277 289 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 VPS72Q15906 364 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 NFIL3Q16649 462 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 DUOXA2Q1HG44 320 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 KBTBD12Q3ZCT8 623 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 CRY2Q49AN0 593 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 LRRC23Q53EV4 343 aaPredicted RBP13.18□□□□□ -0.3
LIG1-221ENST00000613670 SLITRK1Q96PX8 696 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 CENPKQ9BS16 269 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 STRIP2Q9ULQ0 834 aa13.18□□□□□ -0.3
LIG1-221ENST00000613670 MEI4A8MW99 385 aa13.17□□□□□ -0.3
LIG1-221ENST00000613670 KBTBD13C9JR72 458 aa13.17□□□□□ -0.3
LIG1-221ENST00000613670 TCF4P15884 667 aa13.17□□□□□ -0.3
LIG1-221ENST00000613670 HOXA10P31260 410 aaPredicted RBP13.17□□□□□ -0.3
LIG1-221ENST00000613670 RGS7P49802 495 aa13.17□□□□□ -0.3
LIG1-221ENST00000613670 SNRPFP62306 86 aaKnown RBP13.17□□□□□ -0.3
LIG1-221ENST00000613670 COG7P83436 770 aa13.17□□□□□ -0.3
LIG1-221ENST00000613670 ASPHQ12797 758 aa13.17□□□□□ -0.3
LIG1-221ENST00000613670 MTMR2Q13614 643 aa13.17□□□□□ -0.3
LIG1-221ENST00000613670 TFDP2Q14188 446 aa13.17□□□□□ -0.3
LIG1-221ENST00000613670 MAPK6Q16659 721 aa13.17□□□□□ -0.3
LIG1-221ENST00000613670 PARP6Q2NL67 630 aa13.17□□□□□ -0.3
LIG1-221ENST00000613670 DPY19L2P1Q6NXN4 242 aa13.17□□□□□ -0.3
LIG1-221ENST00000613670 POU5F2Q8N7G0 328 aa13.17□□□□□ -0.3
LIG1-221ENST00000613670 NSUN6Q8TEA1 469 aaKnown RBP13.17□□□□□ -0.3
LIG1-221ENST00000613670 CDKL2Q92772 493 aa13.17□□□□□ -0.3
LIG1-221ENST00000613670 MED7O43513 233 aa13.17□□□□□ -0.3
LIG1-221ENST00000613670 STAMBPO95630 424 aa13.17□□□□□ -0.3
LIG1-221ENST00000613670 SESN2P58004 480 aaPredicted RBP13.17□□□□□ -0.3
LIG1-221ENST00000613670 TRIP10Q15642 601 aa13.17□□□□□ -0.3
LIG1-221ENST00000613670 NIM1KQ8IY84 436 aa13.17□□□□□ -0.3
LIG1-221ENST00000613670 RPAP3Q9H6T3 665 aaPredicted RBP13.17□□□□□ -0.3
LIG1-221ENST00000613670 ZNF302Q9NR11 478 aa13.17□□□□□ -0.3
LIG1-221ENST00000613670 ZNF277Q9NRM2 450 aaPredicted RBP13.17□□□□□ -0.3
LIG1-221ENST00000613670 ASTN2O75129 1339 aaPredicted RBP13.17□□□□□ -0.3
LIG1-221ENST00000613670 EME2A4GXA9 379 aaPredicted RBP13.17□□□□□ -0.3
LIG1-221ENST00000613670 A6NJR5 290 aa13.17□□□□□ -0.3
LIG1-221ENST00000613670 PEX11AO75192 247 aa13.17□□□□□ -0.3
LIG1-221ENST00000613670 SNRPAP09012 282 aaKnown RBP13.17□□□□□ -0.3
LIG1-221ENST00000613670 ACADSP16219 412 aa13.17□□□□□ -0.3
LIG1-221ENST00000613670 NOMO3P69849 1222 aa13.17□□□□□ -0.3
LIG1-221ENST00000613670 DACT2Q5SW24 774 aa13.17□□□□□ -0.3
LIG1-221ENST00000613670 SCUBE1Q8IWY4 988 aa13.17□□□□□ -0.3
LIG1-221ENST00000613670 UBA3Q8TBC4 463 aa13.17□□□□□ -0.3
LIG1-221ENST00000613670 CD101Q93033 1021 aa13.17□□□□□ -0.3
LIG1-221ENST00000613670 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.17□□□□□ -0.3
LIG1-221ENST00000613670 GPATCH2LQ9NWQ4 482 aa13.17□□□□□ -0.3
LIG1-221ENST00000613670 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.17□□□□□ -0.3
LIG1-221ENST00000613670 KAT6AQ92794 2004 aa13.17□□□□□ -0.3
LIG1-221ENST00000613670 SPDYE5A6NIY4 337 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 SNUPNO95149 360 aaKnown RBP13.16□□□□□ -0.3
LIG1-221ENST00000613670 PSMG1O95456 288 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 FDX1P10109 184 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 MAPTP10636 758 aaKnown RBP13.16□□□□□ -0.3
LIG1-221ENST00000613670 MGAT5Q09328 741 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 CUL3Q13618 768 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 TDRD10Q5VZ19 366 aaKnown RBP13.16□□□□□ -0.3
LIG1-221ENST00000613670 TATDN1Q6P1N9 297 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 BSNDQ8WZ55 320 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms