RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 MDH1BQ5I0G3 518 aa20.63■□□□□ 0.89
UPF1-212ENST00000601689 CREBRFQ8IUR6 639 aa20.63■□□□□ 0.89
UPF1-212ENST00000601689 E2F7Q96AV8 911 aa20.63■□□□□ 0.89
UPF1-212ENST00000601689 LPIN3Q9BQK8 851 aa20.63■□□□□ 0.89
UPF1-212ENST00000601689 MED10Q9BTT4 135 aa20.63■□□□□ 0.89
UPF1-212ENST00000601689 DNAJC25Q9H1X3 360 aa20.63■□□□□ 0.89
UPF1-212ENST00000601689 FAM124BQ9H5Z6 455 aaPredicted RBP20.63■□□□□ 0.89
UPF1-212ENST00000601689 ZFP14Q9HCL3 533 aa20.63■□□□□ 0.89
UPF1-212ENST00000601689 FBXL21Q9UKT6 434 aa20.63■□□□□ 0.89
UPF1-212ENST00000601689 DUSP12Q9UNI6 340 aa20.63■□□□□ 0.89
UPF1-212ENST00000601689 A0A1W2PRU2 124 aa20.62■□□□□ 0.89
UPF1-212ENST00000601689 ATP2C2O75185 946 aa20.62■□□□□ 0.89
UPF1-212ENST00000601689 CEBPBP17676 345 aa20.62■□□□□ 0.89
UPF1-212ENST00000601689 BDNFP23560 247 aa20.62■□□□□ 0.89
UPF1-212ENST00000601689 YWHAEP62258 255 aaKnown RBP20.62■□□□□ 0.89
UPF1-212ENST00000601689 SLC5A9Q2M3M2 681 aa20.62■□□□□ 0.89
UPF1-212ENST00000601689 PCED1BQ96HM7 432 aa20.62■□□□□ 0.89
UPF1-212ENST00000601689 PKMYT1Q99640 499 aa20.62■□□□□ 0.89
UPF1-212ENST00000601689 DUSP9Q99956 384 aaKnown RBP20.62■□□□□ 0.89
UPF1-212ENST00000601689 CRTAC1Q9NQ79 661 aa20.62■□□□□ 0.89
UPF1-212ENST00000601689 MAGED2Q9UNF1 606 aaPredicted RBP20.62■□□□□ 0.89
UPF1-212ENST00000601689 NUMBLQ9Y6R0 609 aa20.62■□□□□ 0.89
UPF1-212ENST00000601689 ANHXE9PGG2 379 aa20.61■□□□□ 0.89
UPF1-212ENST00000601689 P4HA2O15460 535 aa20.61■□□□□ 0.89
UPF1-212ENST00000601689 SRFP11831 508 aa20.61■□□□□ 0.89
UPF1-212ENST00000601689 ATF6P18850 670 aa20.61■□□□□ 0.89
UPF1-212ENST00000601689 RAP1GAPP47736 663 aa20.61■□□□□ 0.89
UPF1-212ENST00000601689 CDR1P51861 262 aa20.61■□□□□ 0.89
UPF1-212ENST00000601689 HTR4Q13639 388 aa20.61■□□□□ 0.89
UPF1-212ENST00000601689 DDR2Q16832 855 aa20.61■□□□□ 0.89
UPF1-212ENST00000601689 CT47A1Q5JQC4 288 aaPredicted RBP20.61■□□□□ 0.89
UPF1-212ENST00000601689 SPOPLQ6IQ16 392 aa20.61■□□□□ 0.89
UPF1-212ENST00000601689 FAM114A1Q8IWE2 563 aa20.61■□□□□ 0.89
UPF1-212ENST00000601689 SLC44A3Q8N4M1 653 aa20.61■□□□□ 0.89
UPF1-212ENST00000601689 NT5C1AQ9BXI3 368 aa20.61■□□□□ 0.89
UPF1-212ENST00000601689 UTP18Q9Y5J1 556 aaKnown RBP eCLIP20.61■□□□□ 0.89
UPF1-212ENST00000601689 TMEM221A6NGB7 291 aa20.6■□□□□ 0.89
UPF1-212ENST00000601689 M0R296 226 aa20.6■□□□□ 0.89
UPF1-212ENST00000601689 DPYSL4O14531 572 aa20.6■□□□□ 0.89
UPF1-212ENST00000601689 HCRTO43612 131 aa20.6■□□□□ 0.89
UPF1-212ENST00000601689 ECI2O75521 394 aa20.6■□□□□ 0.89
UPF1-212ENST00000601689 RFX1P22670 979 aa20.6■□□□□ 0.89
UPF1-212ENST00000601689 DDX6P26196 483 aaKnown RBP eCLIP20.6■□□□□ 0.89
UPF1-212ENST00000601689 NDST1P52848 882 aa20.6■□□□□ 0.89
UPF1-212ENST00000601689 NLRP12P59046 1061 aa20.6■□□□□ 0.89
UPF1-212ENST00000601689 PFKPQ01813 784 aa20.6■□□□□ 0.89
UPF1-212ENST00000601689 TEAD2Q15562 447 aa20.6■□□□□ 0.89
UPF1-212ENST00000601689 SASS6Q6UVJ0 657 aa20.6■□□□□ 0.89
UPF1-212ENST00000601689 TMC8Q8IU68 726 aa20.6■□□□□ 0.89
UPF1-212ENST00000601689 SUGP1Q8IWZ8 645 aaKnown RBP20.6■□□□□ 0.89
UPF1-212ENST00000601689 MRPS31Q92665 395 aaKnown RBP20.6■□□□□ 0.89
UPF1-212ENST00000601689 SLC35C1Q96A29 364 aa20.6■□□□□ 0.89
UPF1-212ENST00000601689 PBXIP1Q96AQ6 731 aa20.6■□□□□ 0.89
UPF1-212ENST00000601689 TCEAL4Q96EI5 215 aa20.6■□□□□ 0.89
UPF1-212ENST00000601689 SPATA17Q96L03 361 aa20.6■□□□□ 0.89
UPF1-212ENST00000601689 BCO2Q9BYV7 579 aa20.6■□□□□ 0.89
UPF1-212ENST00000601689 MFSD1Q9H3U5 465 aa20.6■□□□□ 0.89
UPF1-212ENST00000601689 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.6■□□□□ 0.89
UPF1-212ENST00000601689 ZNF638Q14966 1978 aaKnown RBP20.59■□□□□ 0.89
UPF1-212ENST00000601689 SLC38A8A6NNN8 435 aa20.59■□□□□ 0.89
UPF1-212ENST00000601689 TBXAS1P24557 533 aaPredicted RBP20.59■□□□□ 0.89
UPF1-212ENST00000601689 ASPAP45381 313 aa20.59■□□□□ 0.89
UPF1-212ENST00000601689 FMO5P49326 533 aa20.59■□□□□ 0.89
UPF1-212ENST00000601689 GPR158Q5T848 1215 aa20.59■□□□□ 0.89
UPF1-212ENST00000601689 PARM1Q6UWI2 310 aa20.59■□□□□ 0.89
UPF1-212ENST00000601689 DENND5BQ6ZUT9 1274 aa20.59■□□□□ 0.89
UPF1-212ENST00000601689 SHKBP1Q8TBC3 707 aa20.59■□□□□ 0.89
UPF1-212ENST00000601689 GPR152Q8TDT2 470 aa20.59■□□□□ 0.89
UPF1-212ENST00000601689 RSAD2Q8WXG1 361 aa20.59■□□□□ 0.89
UPF1-212ENST00000601689 FGF14Q92915 247 aa20.59■□□□□ 0.89
UPF1-212ENST00000601689 SMARCD2Q92925 531 aa20.59■□□□□ 0.89
UPF1-212ENST00000601689 ELSPBP1Q96BH3 223 aa20.59■□□□□ 0.89
UPF1-212ENST00000601689 SMARCD1Q96GM5 515 aa20.59■□□□□ 0.89
UPF1-212ENST00000601689 DPEP3Q9H4B8 488 aa20.59■□□□□ 0.89
UPF1-212ENST00000601689 COQ4Q9Y3A0 265 aa20.59■□□□□ 0.89
UPF1-212ENST00000601689 FAM86C2PA6NEL3 165 aa20.58■□□□□ 0.89
UPF1-212ENST00000601689 SOBPA7XYQ1 873 aa20.58■□□□□ 0.89
UPF1-212ENST00000601689 PMM2O15305 246 aa20.58■□□□□ 0.89
UPF1-212ENST00000601689 AFPP02771 609 aaKnown RBP20.58■□□□□ 0.89
UPF1-212ENST00000601689 GJA1P17302 382 aa20.58■□□□□ 0.89
UPF1-212ENST00000601689 CD58P19256 250 aa20.58■□□□□ 0.89
UPF1-212ENST00000601689 ERCC5P28715 1186 aaPredicted RBP20.58■□□□□ 0.89
UPF1-212ENST00000601689 CCR2P41597 374 aa20.58■□□□□ 0.89
UPF1-212ENST00000601689 PDE6CP51160 858 aa20.58■□□□□ 0.89
UPF1-212ENST00000601689 MARSP56192 900 aaKnown RBP20.58■□□□□ 0.89
UPF1-212ENST00000601689 INCA1Q0VD86 236 aa20.58■□□□□ 0.89
UPF1-212ENST00000601689 CBWD6Q4V339 395 aa20.58■□□□□ 0.89
UPF1-212ENST00000601689 CBWD3Q5JTY5 395 aa20.58■□□□□ 0.89
UPF1-212ENST00000601689 CBWD5Q5RIA9 395 aa20.58■□□□□ 0.89
UPF1-212ENST00000601689 BMP8AQ7Z5Y6 402 aa20.58■□□□□ 0.89
UPF1-212ENST00000601689 ACOT1Q86TX2 421 aa20.58■□□□□ 0.89
UPF1-212ENST00000601689 YAF2Q8IY57 180 aa20.58■□□□□ 0.89
UPF1-212ENST00000601689 CRYBG2Q8N1P7 616 aa20.58■□□□□ 0.89
UPF1-212ENST00000601689 ZSCAN18Q8TBC5 510 aaPredicted RBP20.58■□□□□ 0.89
UPF1-212ENST00000601689 TRMT2BQ96GJ1 504 aaKnown RBP20.58■□□□□ 0.89
UPF1-212ENST00000601689 C8orf48Q96LL4 319 aa20.58■□□□□ 0.89
UPF1-212ENST00000601689 ASB16Q96NS5 453 aa20.58■□□□□ 0.89
UPF1-212ENST00000601689 LRFN3Q9BTN0 628 aa20.58■□□□□ 0.89
UPF1-212ENST00000601689 LRRC3Q9BY71 257 aa20.58■□□□□ 0.89
UPF1-212ENST00000601689 TASP1Q9H6P5 420 aa20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms