RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 EXOC7Q9UPT5 735 aa13.46□□□□□ -0.25
TRIM28-212ENST00000597995 TCHHQ07283 1943 aa13.46□□□□□ -0.25
TRIM28-212ENST00000597995 MAP1BP46821 2468 aaKnown RBP13.45□□□□□ -0.26
TRIM28-212ENST00000597995 ATG2BQ96BY7 2078 aa13.45□□□□□ -0.26
TRIM28-212ENST00000597995 EGFP01133 1207 aa13.45□□□□□ -0.26
TRIM28-212ENST00000597995 ARSAP15289 507 aa13.45□□□□□ -0.26
TRIM28-212ENST00000597995 PXNP49023 591 aaPredicted RBP13.45□□□□□ -0.26
TRIM28-212ENST00000597995 GALK1P51570 392 aa13.45□□□□□ -0.26
TRIM28-212ENST00000597995 FAM160A1Q05DH4 1040 aa13.45□□□□□ -0.26
TRIM28-212ENST00000597995 SF3A2Q15428 464 aaKnown RBP13.45□□□□□ -0.26
TRIM28-212ENST00000597995 PLA2G2CQ5R387 149 aa13.45□□□□□ -0.26
TRIM28-212ENST00000597995 TRIM68Q6AZZ1 485 aa13.45□□□□□ -0.26
TRIM28-212ENST00000597995 SFR1Q86XK3 245 aa13.45□□□□□ -0.26
TRIM28-212ENST00000597995 HSCBQ8IWL3 235 aa13.45□□□□□ -0.26
TRIM28-212ENST00000597995 TMEM86AQ8N2M4 240 aa13.45□□□□□ -0.26
TRIM28-212ENST00000597995 CPA6Q8N4T0 437 aa13.45□□□□□ -0.26
TRIM28-212ENST00000597995 LRRC52Q8N7C0 313 aa13.45□□□□□ -0.26
TRIM28-212ENST00000597995 CACTINQ8WUQ7 758 aaKnown RBP13.45□□□□□ -0.26
TRIM28-212ENST00000597995 TRMT2BQ96GJ1 504 aaKnown RBP13.45□□□□□ -0.26
TRIM28-212ENST00000597995 CHAMP1Q96JM3 812 aa13.45□□□□□ -0.26
TRIM28-212ENST00000597995 P2RY13Q9BPV8 354 aa13.45□□□□□ -0.26
TRIM28-212ENST00000597995 PI4K2AQ9BTU6 479 aa13.45□□□□□ -0.26
TRIM28-212ENST00000597995 TMEM206Q9H813 350 aa13.45□□□□□ -0.26
TRIM28-212ENST00000597995 FBRSL1Q9HCM7 1045 aaKnown RBP13.45□□□□□ -0.26
TRIM28-212ENST00000597995 MAGED2Q9UNF1 606 aaPredicted RBP13.45□□□□□ -0.26
TRIM28-212ENST00000597995 CHD8Q9HCK8 2581 aa13.45□□□□□ -0.26
TRIM28-212ENST00000597995 SPTLC2O15270 562 aa13.44□□□□□ -0.26
TRIM28-212ENST00000597995 HUS1O60921 280 aa13.44□□□□□ -0.26
TRIM28-212ENST00000597995 RNF40O75150 1001 aa13.44□□□□□ -0.26
TRIM28-212ENST00000597995 NOL4O94818 638 aa13.44□□□□□ -0.26
TRIM28-212ENST00000597995 LDHAP00338 332 aaKnown RBP13.44□□□□□ -0.26
TRIM28-212ENST00000597995 GAP43P17677 238 aa13.44□□□□□ -0.26
TRIM28-212ENST00000597995 GJA4P35212 333 aa13.44□□□□□ -0.26
TRIM28-212ENST00000597995 GPR15P49685 360 aa13.44□□□□□ -0.26
TRIM28-212ENST00000597995 MYL7Q01449 175 aa13.44□□□□□ -0.26
TRIM28-212ENST00000597995 KCNA1Q09470 495 aa13.44□□□□□ -0.26
TRIM28-212ENST00000597995 MTF1Q14872 753 aa13.44□□□□□ -0.26
TRIM28-212ENST00000597995 INTS6LQ5JSJ4 861 aaKnown RBP13.44□□□□□ -0.26
TRIM28-212ENST00000597995 STPG1Q5TH74 334 aa13.44□□□□□ -0.26
TRIM28-212ENST00000597995 SV2BQ7L1I2 683 aa13.44□□□□□ -0.26
TRIM28-212ENST00000597995 SYT13Q7L8C5 426 aa13.44□□□□□ -0.26
TRIM28-212ENST00000597995 BRSK2Q8IWQ3 736 aa13.44□□□□□ -0.26
TRIM28-212ENST00000597995 PDCL2Q8N4E4 241 aa13.44□□□□□ -0.26
TRIM28-212ENST00000597995 SPRYD3Q8NCJ5 442 aa13.44□□□□□ -0.26
TRIM28-212ENST00000597995 RIN3Q8TB24 985 aa13.44□□□□□ -0.26
TRIM28-212ENST00000597995 ACCSQ96QU6 501 aa13.44□□□□□ -0.26
TRIM28-212ENST00000597995 PKMYT1Q99640 499 aa13.44□□□□□ -0.26
TRIM28-212ENST00000597995 FGFBP2Q9BYJ0 223 aa13.44□□□□□ -0.26
TRIM28-212ENST00000597995 ECT2Q9H8V3 914 aa13.44□□□□□ -0.26
TRIM28-212ENST00000597995 VPS45Q9NRW7 570 aa13.44□□□□□ -0.26
TRIM28-212ENST00000597995 GDAP2Q9NXN4 497 aa13.44□□□□□ -0.26
TRIM28-212ENST00000597995 DDX43Q9NXZ2 648 aaKnown RBP13.44□□□□□ -0.26
TRIM28-212ENST00000597995 EBF1Q9UH73 591 aa13.44□□□□□ -0.26
TRIM28-212ENST00000597995 AGAP1Q9UPQ3 857 aa13.44□□□□□ -0.26
TRIM28-212ENST00000597995 FRMD3A2A2Y4 597 aa13.43□□□□□ -0.26
TRIM28-212ENST00000597995 OBSL1O75147 1896 aa13.43□□□□□ -0.26
TRIM28-212ENST00000597995 PPP6R2O75170 966 aa13.43□□□□□ -0.26
TRIM28-212ENST00000597995 ITGB3P05106 788 aa13.43□□□□□ -0.26
TRIM28-212ENST00000597995 USP17L7P0C7H9 530 aa13.43□□□□□ -0.26
TRIM28-212ENST00000597995 ZSCAN22P10073 491 aaPredicted RBP13.43□□□□□ -0.26
TRIM28-212ENST00000597995 PMLP29590 882 aa13.43□□□□□ -0.26
TRIM28-212ENST00000597995 POLR2BP30876 1174 aaKnown RBP13.43□□□□□ -0.26
TRIM28-212ENST00000597995 MPLP40238 635 aa13.43□□□□□ -0.26
TRIM28-212ENST00000597995 LHX1P48742 406 aa13.43□□□□□ -0.26
TRIM28-212ENST00000597995 CASP5P51878 434 aa13.43□□□□□ -0.26
TRIM28-212ENST00000597995 SHC2P98077 582 aa13.43□□□□□ -0.26
TRIM28-212ENST00000597995 TFAMQ00059 246 aaKnown RBP13.43□□□□□ -0.26
TRIM28-212ENST00000597995 STK38Q15208 465 aa13.43□□□□□ -0.26
TRIM28-212ENST00000597995 CCDC6Q16204 474 aa13.43□□□□□ -0.26
TRIM28-212ENST00000597995 E2F4Q16254 413 aa13.43□□□□□ -0.26
TRIM28-212ENST00000597995 DDR2Q16832 855 aa13.43□□□□□ -0.26
TRIM28-212ENST00000597995 FOXD4L6Q3SYB3 417 aaPredicted RBP13.43□□□□□ -0.26
TRIM28-212ENST00000597995 PLK5Q496M5 336 aa13.43□□□□□ -0.26
TRIM28-212ENST00000597995 CFAP221Q4G0U5 840 aa13.43□□□□□ -0.26
TRIM28-212ENST00000597995 L1TD1Q5T7N2 865 aaKnown RBP13.43□□□□□ -0.26
TRIM28-212ENST00000597995 N4BP2L1Q5TBK1 243 aaPredicted RBP13.43□□□□□ -0.26
TRIM28-212ENST00000597995 SHC4Q6S5L8 630 aa13.43□□□□□ -0.26
TRIM28-212ENST00000597995 FOXD4L3Q6VB84 417 aaPredicted RBP13.43□□□□□ -0.26
TRIM28-212ENST00000597995 CCDC73Q6ZRK6 1079 aa13.43□□□□□ -0.26
TRIM28-212ENST00000597995 PDILTQ8N807 584 aa13.43□□□□□ -0.26
TRIM28-212ENST00000597995 C1orf127Q8N9H9 656 aa13.43□□□□□ -0.26
TRIM28-212ENST00000597995 CCDC26Q8TAB7 109 aa13.43□□□□□ -0.26
TRIM28-212ENST00000597995 OSCP1Q8WVF1 389 aa13.43□□□□□ -0.26
TRIM28-212ENST00000597995 FUBP3Q96I24 572 aaKnown RBP eCLIP13.43□□□□□ -0.26
TRIM28-212ENST00000597995 FAM213AQ9BRX8 229 aa13.43□□□□□ -0.26
TRIM28-212ENST00000597995 MRPL44Q9H9J2 332 aaKnown RBP13.43□□□□□ -0.26
TRIM28-212ENST00000597995 RXFP3Q9NSD7 469 aa13.43□□□□□ -0.26
TRIM28-212ENST00000597995 DUS2Q9NX74 493 aaKnown RBP13.43□□□□□ -0.26
TRIM28-212ENST00000597995 TBC1D7Q9P0N9 293 aa13.43□□□□□ -0.26
TRIM28-212ENST00000597995 ANGPTL2Q9UKU9 493 aa13.43□□□□□ -0.26
TRIM28-212ENST00000597995 ITGA11Q9UKX5 1188 aa13.43□□□□□ -0.26
TRIM28-212ENST00000597995 L1RE1Q9UN81 338 aa13.43□□□□□ -0.26
TRIM28-212ENST00000597995 TRAV19A0A0A6YYK7 116 aa13.42□□□□□ -0.26
TRIM28-212ENST00000597995 GABRDO14764 452 aa13.42□□□□□ -0.26
TRIM28-212ENST00000597995 TADA3O75528 432 aa13.42□□□□□ -0.26
TRIM28-212ENST00000597995 RHOBTB1O94844 696 aa13.42□□□□□ -0.26
TRIM28-212ENST00000597995 YEATS4O95619 227 aa13.42□□□□□ -0.26
TRIM28-212ENST00000597995 APBB3O95704 486 aa13.42□□□□□ -0.26
TRIM28-212ENST00000597995 F13A1P00488 732 aa13.42□□□□□ -0.26
TRIM28-212ENST00000597995 TCF3P15923 654 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms