RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 CFAP221Q4G0U5 840 aa16.13■□□□□ 0.17
LIG1-215ENST00000597901 NKD2Q969F2 451 aaPredicted RBP16.13■□□□□ 0.17
LIG1-215ENST00000597901 CCDC47Q96A33 483 aaKnown RBP16.13■□□□□ 0.17
LIG1-215ENST00000597901 FUBP3Q96I24 572 aaKnown RBP eCLIP16.13■□□□□ 0.17
LIG1-215ENST00000597901 GCNAQ96QF7 691 aa16.13■□□□□ 0.17
LIG1-215ENST00000597901 SNX25Q9H3E2 840 aa16.13■□□□□ 0.17
LIG1-215ENST00000597901 CRTAC1Q9NQ79 661 aa16.13■□□□□ 0.17
LIG1-215ENST00000597901 OBP2AQ9NY56 170 aa16.13■□□□□ 0.17
LIG1-215ENST00000597901 MYH15Q9Y2K3 1946 aa16.12■□□□□ 0.17
LIG1-215ENST00000597901 SLC38A8A6NNN8 435 aa16.12■□□□□ 0.17
LIG1-215ENST00000597901 LRRIQ3A6PVS8 624 aaPredicted RBP16.12■□□□□ 0.17
LIG1-215ENST00000597901 SOBPA7XYQ1 873 aa16.12■□□□□ 0.17
LIG1-215ENST00000597901 NOL4O94818 638 aa16.12■□□□□ 0.17
LIG1-215ENST00000597901 RHOBTB3O94955 611 aa16.12■□□□□ 0.17
LIG1-215ENST00000597901 NR3C1P04150 777 aa16.12■□□□□ 0.17
LIG1-215ENST00000597901 ATICP31939 592 aa16.12■□□□□ 0.17
LIG1-215ENST00000597901 MAGEA11P43364 429 aa16.12■□□□□ 0.17
LIG1-215ENST00000597901 MLLT6P55198 1093 aaPredicted RBP16.12■□□□□ 0.17
LIG1-215ENST00000597901 PSMC1P62191 440 aaKnown RBP16.12■□□□□ 0.17
LIG1-215ENST00000597901 MAPRE1Q15691 268 aaKnown RBP16.12■□□□□ 0.17
LIG1-215ENST00000597901 C4orf50Q6ZRC1 276 aa16.12■□□□□ 0.17
LIG1-215ENST00000597901 SCN4BQ8IWT1 228 aa16.12■□□□□ 0.17
LIG1-215ENST00000597901 CMTM8Q8IZV2 173 aa16.12■□□□□ 0.17
LIG1-215ENST00000597901 ZNF687Q8N1G0 1237 aa16.12■□□□□ 0.17
LIG1-215ENST00000597901 MAB21L3Q8N8X9 362 aa16.12■□□□□ 0.17
LIG1-215ENST00000597901 STKLD1Q8NE28 680 aa16.12■□□□□ 0.17
LIG1-215ENST00000597901 OR6B3Q8NGW1 331 aa16.12■□□□□ 0.17
LIG1-215ENST00000597901 MYCBPAPQ8TBZ2 947 aa16.12■□□□□ 0.17
LIG1-215ENST00000597901 CSGALNACT1Q8TDX6 532 aa16.12■□□□□ 0.17
LIG1-215ENST00000597901 FAM3CQ92520 227 aa16.12■□□□□ 0.17
LIG1-215ENST00000597901 MYRFLQ96LU7 910 aa16.12■□□□□ 0.17
LIG1-215ENST00000597901 XYLT2Q9H1B5 865 aa16.12■□□□□ 0.17
LIG1-215ENST00000597901 NXF1Q9UBU9 619 aaKnown RBP16.12■□□□□ 0.17
LIG1-215ENST00000597901 ZMYM5Q9UJ78 669 aa16.12■□□□□ 0.17
LIG1-215ENST00000597901 TRAF3IP3Q9Y228 551 aa16.12■□□□□ 0.17
LIG1-215ENST00000597901 NME7Q9Y5B8 376 aa16.12■□□□□ 0.17
LIG1-215ENST00000597901 PIAS3Q9Y6X2 628 aa16.12■□□□□ 0.17
LIG1-215ENST00000597901 CALUO43852 315 aaPredicted RBP16.11■□□□□ 0.17
LIG1-215ENST00000597901 KIF20AO95235 890 aa16.11■□□□□ 0.17
LIG1-215ENST00000597901 PRAMEF12O95522 483 aa16.11■□□□□ 0.17
LIG1-215ENST00000597901 SP9P0CG40 484 aa16.11■□□□□ 0.17
LIG1-215ENST00000597901 PTPN1P18031 435 aaKnown RBP16.11■□□□□ 0.17
LIG1-215ENST00000597901 MAGEA9P43362 315 aa16.11■□□□□ 0.17
LIG1-215ENST00000597901 TNNC1P63316 161 aa16.11■□□□□ 0.17
LIG1-215ENST00000597901 DLG4P78352 724 aa16.11■□□□□ 0.17
LIG1-215ENST00000597901 BIRC3Q13489 604 aa16.11■□□□□ 0.17
LIG1-215ENST00000597901 ARHGAP29Q52LW3 1261 aa16.11■□□□□ 0.17
LIG1-215ENST00000597901 TDRD10Q5VZ19 366 aaKnown RBP16.11■□□□□ 0.17
LIG1-215ENST00000597901 TXNDC8Q6A555 127 aa16.11■□□□□ 0.17
LIG1-215ENST00000597901 ASCL5Q7RTU5 278 aa16.11■□□□□ 0.17
LIG1-215ENST00000597901 MON1AQ86VX9 555 aa16.11■□□□□ 0.17
LIG1-215ENST00000597901 MAML2Q8IZL2 1156 aaPredicted RBP16.11■□□□□ 0.17
LIG1-215ENST00000597901 CELF5Q8N6W0 485 aaKnown RBP16.11■□□□□ 0.17
LIG1-215ENST00000597901 BPIFB1Q8TDL5 484 aa16.11■□□□□ 0.17
LIG1-215ENST00000597901 MRPS31Q92665 395 aaKnown RBP16.11■□□□□ 0.17
LIG1-215ENST00000597901 MYLPFQ96A32 169 aa16.11■□□□□ 0.17
LIG1-215ENST00000597901 SYAP1Q96A49 352 aaPredicted RBP16.11■□□□□ 0.17
LIG1-215ENST00000597901 SMG9Q9H0W8 520 aaKnown RBP16.11■□□□□ 0.17
LIG1-215ENST00000597901 SPATA6Q9NWH7 488 aaPredicted RBP16.11■□□□□ 0.17
LIG1-215ENST00000597901 NDRG2Q9UN36 371 aaKnown RBP16.11■□□□□ 0.17
LIG1-215ENST00000597901 MAPK8IP1Q9UQF2 711 aa16.11■□□□□ 0.17
LIG1-215ENST00000597901 BDNFP23560 247 aa16.1■□□□□ 0.17
LIG1-215ENST00000597901 CCNE1P24864 410 aa16.1■□□□□ 0.17
LIG1-215ENST00000597901 DDX6P26196 483 aaKnown RBP eCLIP16.1■□□□□ 0.17
LIG1-215ENST00000597901 GRIK1P39086 918 aa16.1■□□□□ 0.17
LIG1-215ENST00000597901 RPS9P46781 194 aaKnown RBP16.1■□□□□ 0.17
LIG1-215ENST00000597901 KPNA1P52294 538 aaPredicted RBP16.1■□□□□ 0.17
LIG1-215ENST00000597901 NUCB2P80303 420 aa16.1■□□□□ 0.17
LIG1-215ENST00000597901 CYP27A1Q02318 531 aa16.1■□□□□ 0.17
LIG1-215ENST00000597901 KCNB1Q14721 858 aa16.1■□□□□ 0.17
LIG1-215ENST00000597901 CEP135Q66GS9 1140 aa16.1■□□□□ 0.17
LIG1-215ENST00000597901 VSTM1Q6UX27 236 aa16.1■□□□□ 0.17
LIG1-215ENST00000597901 TTC8Q8TAM2 541 aa16.1■□□□□ 0.17
LIG1-215ENST00000597901 TMC2Q8TDI7 906 aa16.1■□□□□ 0.17
LIG1-215ENST00000597901 TRMT2BQ96GJ1 504 aaKnown RBP16.1■□□□□ 0.17
LIG1-215ENST00000597901 PCED1BQ96HM7 432 aa16.1■□□□□ 0.17
LIG1-215ENST00000597901 ZFYVE19Q96K21 471 aa16.1■□□□□ 0.17
LIG1-215ENST00000597901 C8orf33Q9H7E9 229 aaPredicted RBP16.1■□□□□ 0.17
LIG1-215ENST00000597901 VRTNQ9H8Y1 702 aa16.1■□□□□ 0.17
LIG1-215ENST00000597901 LMAN1LQ9HAT1 526 aa16.1■□□□□ 0.17
LIG1-215ENST00000597901 GKN1Q9NS71 199 aa16.1■□□□□ 0.17
LIG1-215ENST00000597901 THG1LQ9NWX6 298 aaKnown RBP16.1■□□□□ 0.17
LIG1-215ENST00000597901 UXTQ9UBK9 157 aaPredicted RBP16.1■□□□□ 0.17
LIG1-215ENST00000597901 COL4A3Q01955 1670 aa16.09■□□□□ 0.17
LIG1-215ENST00000597901 PRR23AA6NEV1 266 aa16.09■□□□□ 0.17
LIG1-215ENST00000597901 A8MXQ7 604 aa16.09■□□□□ 0.17
LIG1-215ENST00000597901 IKBKBO14920 756 aa16.09■□□□□ 0.17
LIG1-215ENST00000597901 LAMTOR5O43504 91 aa16.09■□□□□ 0.17
LIG1-215ENST00000597901 VNN1O95497 513 aa16.09■□□□□ 0.17
LIG1-215ENST00000597901 AVPR1AP37288 418 aa16.09■□□□□ 0.17
LIG1-215ENST00000597901 CDH8P55286 799 aa16.09■□□□□ 0.17
LIG1-215ENST00000597901 NCOA4Q13772 614 aa16.09■□□□□ 0.17
LIG1-215ENST00000597901 SGSM1Q2NKQ1 1148 aa16.09■□□□□ 0.17
LIG1-215ENST00000597901 MDH1BQ5I0G3 518 aa16.09■□□□□ 0.17
LIG1-215ENST00000597901 ZC3H14Q6PJT7 736 aaKnown RBP16.09■□□□□ 0.17
LIG1-215ENST00000597901 USP13Q92995 863 aaPredicted RBP16.09■□□□□ 0.17
LIG1-215ENST00000597901 ELMO3Q96BJ8 720 aa16.09■□□□□ 0.17
LIG1-215ENST00000597901 SPATA17Q96L03 361 aa16.09■□□□□ 0.17
LIG1-215ENST00000597901 CYP2S1Q96SQ9 504 aa16.09■□□□□ 0.17
LIG1-215ENST00000597901 TDP1Q9NUW8 608 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms