RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	NOL4	O94818	638 aa		11.3	□□□□□ -0.6
LSM4-205	ENST00000597776	SDHB	P21912	280 aa		11.3	□□□□□ -0.6
LSM4-205	ENST00000597776	DDX6	P26196	483 aa	Known RBP eCLIP	11.3	□□□□□ -0.6
LSM4-205	ENST00000597776	PSMC1	P62191	440 aa	Known RBP	11.3	□□□□□ -0.6
LSM4-205	ENST00000597776	RPL10A	P62906	217 aa	Known RBP	11.3	□□□□□ -0.6
LSM4-205	ENST00000597776	RBP5	P82980	135 aa		11.3	□□□□□ -0.6
LSM4-205	ENST00000597776	ARHGAP8	P85298	464 aa		11.3	□□□□□ -0.6
LSM4-205	ENST00000597776	SOWAHA	Q2M3V2	549 aa		11.3	□□□□□ -0.6
LSM4-205	ENST00000597776	TMEM196	Q5HYL7	178 aa		11.3	□□□□□ -0.6
LSM4-205	ENST00000597776	CEP68	Q76N32	757 aa		11.3	□□□□□ -0.6
LSM4-205	ENST00000597776	CBWD2	Q8IUF1	395 aa		11.3	□□□□□ -0.6
LSM4-205	ENST00000597776	SPATA2L	Q8IUW3	424 aa	Predicted RBP	11.3	□□□□□ -0.6
LSM4-205	ENST00000597776	SCN4B	Q8IWT1	228 aa		11.3	□□□□□ -0.6
LSM4-205	ENST00000597776	CCDC65	Q8IXS2	484 aa		11.3	□□□□□ -0.6
LSM4-205	ENST00000597776	TMEM86A	Q8N2M4	240 aa		11.3	□□□□□ -0.6
LSM4-205	ENST00000597776	GPD1L	Q8N335	351 aa		11.3	□□□□□ -0.6
LSM4-205	ENST00000597776	FAM160A2	Q8N612	972 aa	Predicted RBP	11.3	□□□□□ -0.6
LSM4-205	ENST00000597776	SLC22A12	Q96S37	553 aa		11.3	□□□□□ -0.6
LSM4-205	ENST00000597776	FBRSL1	Q9HCM7	1045 aa	Known RBP	11.3	□□□□□ -0.6
LSM4-205	ENST00000597776	ABCB6	Q9NP58	842 aa		11.3	□□□□□ -0.6
LSM4-205	ENST00000597776	ZMYM5	Q9UJ78	669 aa		11.3	□□□□□ -0.6
LSM4-205	ENST00000597776	DENND4C	Q5VZ89	1909 aa		11.29	□□□□□ -0.6
LSM4-205	ENST00000597776	LOC105378220	A0A1B0GUY1	285 aa	Predicted RBP	11.29	□□□□□ -0.6
LSM4-205	ENST00000597776	GABRD	O14764	452 aa		11.29	□□□□□ -0.6
LSM4-205	ENST00000597776	EGF	P01133	1207 aa		11.29	□□□□□ -0.6
LSM4-205	ENST00000597776	LMO2	P25791	158 aa		11.29	□□□□□ -0.6
LSM4-205	ENST00000597776	PCSK1	P29120	753 aa		11.29	□□□□□ -0.6
LSM4-205	ENST00000597776	HOXD13	P35453	343 aa		11.29	□□□□□ -0.6
LSM4-205	ENST00000597776	NASP	P49321	788 aa	Predicted RBP	11.29	□□□□□ -0.6
LSM4-205	ENST00000597776	GRSF1	Q12849	480 aa	Known RBP eCLIP	11.29	□□□□□ -0.6
LSM4-205	ENST00000597776	MTF1	Q14872	753 aa		11.29	□□□□□ -0.6
LSM4-205	ENST00000597776	STK38	Q15208	465 aa		11.29	□□□□□ -0.6
LSM4-205	ENST00000597776	CC2D1A	Q6P1N0	951 aa	Predicted RBP	11.29	□□□□□ -0.6
LSM4-205	ENST00000597776	WDR5B	Q86VZ2	330 aa		11.29	□□□□□ -0.6
LSM4-205	ENST00000597776	SYNPO	Q8N3V7	929 aa		11.29	□□□□□ -0.6
LSM4-205	ENST00000597776	TOP6BL	Q8N6T0	577 aa		11.29	□□□□□ -0.6
LSM4-205	ENST00000597776	KBTBD7	Q8WVZ9	684 aa		11.29	□□□□□ -0.6
LSM4-205	ENST00000597776	TRMT2B	Q96GJ1	504 aa	Known RBP	11.29	□□□□□ -0.6
LSM4-205	ENST00000597776	HPDL	Q96IR7	371 aa		11.29	□□□□□ -0.6
LSM4-205	ENST00000597776	ANKRD36BP1	Q96IX9	119 aa		11.29	□□□□□ -0.6
LSM4-205	ENST00000597776	CYP2S1	Q96SQ9	504 aa		11.29	□□□□□ -0.6
LSM4-205	ENST00000597776	TMEM206	Q9H813	350 aa		11.29	□□□□□ -0.6
LSM4-205	ENST00000597776	KIF9	Q9HAQ2	790 aa		11.29	□□□□□ -0.6
LSM4-205	ENST00000597776	SEMA4G	Q9NTN9	838 aa		11.29	□□□□□ -0.6
LSM4-205	ENST00000597776	INTS13	Q9NVM9	706 aa		11.29	□□□□□ -0.6
LSM4-205	ENST00000597776	UXT	Q9UBK9	157 aa	Predicted RBP	11.29	□□□□□ -0.6
LSM4-205	ENST00000597776	WNT6	Q9Y6F9	365 aa		11.29	□□□□□ -0.6
LSM4-205	ENST00000597776	MORC2	Q9Y6X9	1032 aa	Predicted RBP	11.29	□□□□□ -0.6
LSM4-205	ENST00000597776	SPTBN2	O15020	2390 aa		11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	TRAV19	A0A0A6YYK7	116 aa		11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	C2orf78	A6NCI8	922 aa		11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	ZNF233	A6NK53	670 aa		11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	TRDMT1	O14717	391 aa	Known RBP	11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	STX6	O43752	255 aa		11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	GDF9	O60383	454 aa		11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	LRP3	O75074	770 aa		11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	RNF40	O75150	1001 aa		11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	TNNC2	P02585	160 aa		11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	CKM	P06732	381 aa		11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	HOXA6	P31267	233 aa		11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	CNR2	P34972	360 aa		11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	LHX1	P48742	406 aa		11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	MYO1E	Q12965	1108 aa		11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	USP4	Q13107	963 aa		11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	ZNF268	Q14587	947 aa	Predicted RBP	11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	PDGFRL	Q15198	375 aa		11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	ZNF77	Q15935	545 aa		11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	CCDC6	Q16204	474 aa		11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	E2F4	Q16254	413 aa		11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	CFAP221	Q4G0U5	840 aa		11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	FAM171B	Q6P995	826 aa		11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	PRR23C	Q6ZRP0	262 aa		11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	ARL14EP	Q8N8R7	260 aa	Predicted RBP	11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	LINC00301	Q8NCQ3	95 aa		11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	SPATA18	Q8TC71	538 aa		11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	MYLPF	Q96A32	169 aa		11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	DHX58	Q96C10	678 aa		11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	INTS4	Q96HW7	963 aa	Known RBP	11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	MYRFL	Q96LU7	910 aa		11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	SYT15	Q9BQS2	421 aa		11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	RTKN	Q9BST9	563 aa		11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	TRIM9	Q9C026	710 aa		11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	TNMD	Q9H2S6	317 aa		11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	CRTAC1	Q9NQ79	661 aa		11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	DUS2	Q9NX74	493 aa	Known RBP	11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	HSPBP1	Q9NZL4	362 aa		11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	TFIP11	Q9UBB9	837 aa	Known RBP	11.28	□□□□□ -0.6
LSM4-205	ENST00000597776	ZNF638	Q14966	1978 aa	Known RBP	11.27	□□□□□ -0.61
LSM4-205	ENST00000597776	SOBP	A7XYQ1	873 aa		11.27	□□□□□ -0.61
LSM4-205	ENST00000597776	AXIN1	O15169	862 aa		11.27	□□□□□ -0.61
LSM4-205	ENST00000597776	SPTLC2	O15270	562 aa		11.27	□□□□□ -0.61
LSM4-205	ENST00000597776	PDGFRB	P09619	1106 aa		11.27	□□□□□ -0.61
LSM4-205	ENST00000597776	USP17L7	P0C7H9	530 aa		11.27	□□□□□ -0.61
LSM4-205	ENST00000597776	BDNF	P23560	247 aa		11.27	□□□□□ -0.61
LSM4-205	ENST00000597776	GJA4	P35212	333 aa		11.27	□□□□□ -0.61
LSM4-205	ENST00000597776	MAGEA11	P43364	429 aa		11.27	□□□□□ -0.61
LSM4-205	ENST00000597776	GALK1	P51570	392 aa		11.27	□□□□□ -0.61
LSM4-205	ENST00000597776	ASIC1	P78348	528 aa		11.27	□□□□□ -0.61
LSM4-205	ENST00000597776	CYP27A1	Q02318	531 aa		11.27	□□□□□ -0.61

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