RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 WNT6Q9Y6F9 365 aa10.94□□□□□ -0.66
TRIM28-210ENST00000597618 ABCA7Q8IZY2 2146 aa10.94□□□□□ -0.66
TRIM28-210ENST00000597618 TSC2P49815 1807 aa10.93□□□□□ -0.66
TRIM28-210ENST00000597618 TRAV19A0A0A6YYK7 116 aa10.93□□□□□ -0.66
TRIM28-210ENST00000597618 ANO9A1A5B4 782 aa10.93□□□□□ -0.66
TRIM28-210ENST00000597618 CYB561D2O14569 222 aa10.93□□□□□ -0.66
TRIM28-210ENST00000597618 MAP3K13O43283 966 aa10.93□□□□□ -0.66
TRIM28-210ENST00000597618 NFATC1O95644 943 aa10.93□□□□□ -0.66
TRIM28-210ENST00000597618 CKMP06732 381 aa10.93□□□□□ -0.66
TRIM28-210ENST00000597618 USP17L7P0C7H9 530 aa10.93□□□□□ -0.66
TRIM28-210ENST00000597618 SCP2P22307 547 aa10.93□□□□□ -0.66
TRIM28-210ENST00000597618 TAF6P49848 677 aa10.93□□□□□ -0.66
TRIM28-210ENST00000597618 ATXN3P54252 364 aaPredicted RBP10.93□□□□□ -0.66
TRIM28-210ENST00000597618 SEC13P55735 322 aa10.93□□□□□ -0.66
TRIM28-210ENST00000597618 TSPY1Q01534 308 aa10.93□□□□□ -0.66
TRIM28-210ENST00000597618 GUCY1B3Q02153 619 aa10.93□□□□□ -0.66
TRIM28-210ENST00000597618 RAD51AP2Q09MP3 1159 aa10.93□□□□□ -0.66
TRIM28-210ENST00000597618 SEMA3BQ13214 749 aa10.93□□□□□ -0.66
TRIM28-210ENST00000597618 TMEM132DQ14C87 1099 aa10.93□□□□□ -0.66
TRIM28-210ENST00000597618 NFE2Q16621 373 aaPredicted RBP10.93□□□□□ -0.66
TRIM28-210ENST00000597618 ZNF423Q2M1K9 1284 aa10.93□□□□□ -0.66
TRIM28-210ENST00000597618 C2orf27AQ580R0 203 aa10.93□□□□□ -0.66
TRIM28-210ENST00000597618 SPDYCQ5MJ68 293 aa10.93□□□□□ -0.66
TRIM28-210ENST00000597618 SLC23A3Q6PIS1 610 aa10.93□□□□□ -0.66
TRIM28-210ENST00000597618 LRRTM3Q86VH5 581 aa10.93□□□□□ -0.66
TRIM28-210ENST00000597618 TTC30AQ86WT1 665 aa10.93□□□□□ -0.66
TRIM28-210ENST00000597618 HDDC3Q8N4P3 179 aa10.93□□□□□ -0.66
TRIM28-210ENST00000597618 C4orf32Q8N8J7 132 aa10.93□□□□□ -0.66
TRIM28-210ENST00000597618 TTC16Q8NEE8 873 aa10.93□□□□□ -0.66
TRIM28-210ENST00000597618 KCNN1Q92952 543 aa10.93□□□□□ -0.66
TRIM28-210ENST00000597618 FAM212AQ96EL1 285 aa10.93□□□□□ -0.66
TRIM28-210ENST00000597618 PYM1Q9BRP8 204 aaKnown RBP10.93□□□□□ -0.66
TRIM28-210ENST00000597618 CCSER1Q9C0I3 900 aa10.93□□□□□ -0.66
TRIM28-210ENST00000597618 TRPC7Q9HCX4 862 aa10.93□□□□□ -0.66
TRIM28-210ENST00000597618 KCND2Q9NZV8 630 aa10.93□□□□□ -0.66
TRIM28-210ENST00000597618 CIZ1Q9ULV3 898 aaPredicted RBP10.93□□□□□ -0.66
TRIM28-210ENST00000597618 GPSM3Q9Y4H4 160 aa10.93□□□□□ -0.66
TRIM28-210ENST00000597618 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.92□□□□□ -0.66
TRIM28-210ENST00000597618 PP2D1A8MPX8 630 aa10.92□□□□□ -0.66
TRIM28-210ENST00000597618 K7EQS6 105 aa10.92□□□□□ -0.66
TRIM28-210ENST00000597618 PRPF40AO75400 957 aaKnown RBP10.92□□□□□ -0.66
TRIM28-210ENST00000597618 TADA3O75528 432 aa10.92□□□□□ -0.66
TRIM28-210ENST00000597618 NOL4O94818 638 aa10.92□□□□□ -0.66
TRIM28-210ENST00000597618 NFICP08651 508 aa10.92□□□□□ -0.66
TRIM28-210ENST00000597618 CDC25AP30304 524 aa10.92□□□□□ -0.66
TRIM28-210ENST00000597618 P2RY2P41231 377 aa10.92□□□□□ -0.66
TRIM28-210ENST00000597618 PTGER3P43115 390 aa10.92□□□□□ -0.66
TRIM28-210ENST00000597618 NCKAP1LP55160 1127 aa10.92□□□□□ -0.66
TRIM28-210ENST00000597618 ANAPC15P60006 121 aa10.92□□□□□ -0.66
TRIM28-210ENST00000597618 RPL10AP62906 217 aaKnown RBP10.92□□□□□ -0.66
TRIM28-210ENST00000597618 MRPS21P82921 87 aaKnown RBP10.92□□□□□ -0.66
TRIM28-210ENST00000597618 GNL2Q13823 731 aaKnown RBP10.92□□□□□ -0.66
TRIM28-210ENST00000597618 BYSLQ13895 437 aaKnown RBP10.92□□□□□ -0.66
TRIM28-210ENST00000597618 HNRNPDQ14103 355 aaKnown RBP10.92□□□□□ -0.66
TRIM28-210ENST00000597618 LYSMD4Q5XG99 296 aa10.92□□□□□ -0.66
TRIM28-210ENST00000597618 WSCD1Q658N2 575 aa10.92□□□□□ -0.66
TRIM28-210ENST00000597618 ARMCX6Q7L4S7 300 aa10.92□□□□□ -0.66
TRIM28-210ENST00000597618 KCNK18Q7Z418 384 aa10.92□□□□□ -0.66
TRIM28-210ENST00000597618 RABEPKQ7Z6M1 372 aa10.92□□□□□ -0.66
TRIM28-210ENST00000597618 EFCAB13Q8IY85 973 aa10.92□□□□□ -0.66
TRIM28-210ENST00000597618 TMEFF1Q8IYR6 380 aa10.92□□□□□ -0.66
TRIM28-210ENST00000597618 LEO1Q8WVC0 666 aaPredicted RBP10.92□□□□□ -0.66
TRIM28-210ENST00000597618 TRMT2BQ96GJ1 504 aaKnown RBP10.92□□□□□ -0.66
TRIM28-210ENST00000597618 C8orf76Q96K31 380 aa10.92□□□□□ -0.66
TRIM28-210ENST00000597618 MYRFLQ96LU7 910 aa10.92□□□□□ -0.66
TRIM28-210ENST00000597618 FNBP1Q96RU3 617 aa10.92□□□□□ -0.66
TRIM28-210ENST00000597618 PI4K2AQ9BTU6 479 aa10.92□□□□□ -0.66
TRIM28-210ENST00000597618 MSTO1Q9BUK6 570 aa10.92□□□□□ -0.66
TRIM28-210ENST00000597618 ABCB6Q9NP58 842 aa10.92□□□□□ -0.66
TRIM28-210ENST00000597618 LARSQ9P2J5 1176 aaKnown RBP10.92□□□□□ -0.66
TRIM28-210ENST00000597618 CPSF3Q9UKF6 684 aaKnown RBP10.92□□□□□ -0.66
TRIM28-210ENST00000597618 C2CD2Q9Y426 696 aa10.92□□□□□ -0.66
TRIM28-210ENST00000597618 KIAA1549LQ6ZVL6 1849 aa10.91□□□□□ -0.66
TRIM28-210ENST00000597618 THADAQ6YHU6 1953 aa10.91□□□□□ -0.66
TRIM28-210ENST00000597618 A0A0B4J269 797 aa10.91□□□□□ -0.66
TRIM28-210ENST00000597618 LAD1O00515 517 aa10.91□□□□□ -0.66
TRIM28-210ENST00000597618 OPHN1O60890 802 aa10.91□□□□□ -0.66
TRIM28-210ENST00000597618 SEC24BO95487 1268 aa10.91□□□□□ -0.66
TRIM28-210ENST00000597618 PIGRP01833 764 aa10.91□□□□□ -0.66
TRIM28-210ENST00000597618 CFIP05156 583 aa10.91□□□□□ -0.66
TRIM28-210ENST00000597618 TCF3P15923 654 aa10.91□□□□□ -0.66
TRIM28-210ENST00000597618 OPRD1P41143 372 aa10.91□□□□□ -0.66
TRIM28-210ENST00000597618 GPR15P49685 360 aa10.91□□□□□ -0.66
TRIM28-210ENST00000597618 PDE6CP51160 858 aa10.91□□□□□ -0.66
TRIM28-210ENST00000597618 GFPT1Q06210 699 aaPredicted RBP10.91□□□□□ -0.66
TRIM28-210ENST00000597618 NBR1Q14596 966 aa10.91□□□□□ -0.66
TRIM28-210ENST00000597618 KCNB1Q14721 858 aa10.91□□□□□ -0.66
TRIM28-210ENST00000597618 HSF5Q4G112 596 aaPredicted RBP10.91□□□□□ -0.66
TRIM28-210ENST00000597618 SOWAHCQ53LP3 525 aaPredicted RBP10.91□□□□□ -0.66
TRIM28-210ENST00000597618 PEAR1Q5VY43 1037 aaPredicted RBP10.91□□□□□ -0.66
TRIM28-210ENST00000597618 RAB44Q7Z6P3 723 aaPredicted RBP10.91□□□□□ -0.66
TRIM28-210ENST00000597618 PDZD3Q86UT5 571 aa10.91□□□□□ -0.66
TRIM28-210ENST00000597618 CHCHD4Q8N4Q1 142 aa10.91□□□□□ -0.66
TRIM28-210ENST00000597618 CCDC33Q8N5R6 958 aa10.91□□□□□ -0.66
TRIM28-210ENST00000597618 KCTD17Q8N5Z5 321 aa10.91□□□□□ -0.66
TRIM28-210ENST00000597618 FSIP1Q8NA03 581 aa10.91□□□□□ -0.66
TRIM28-210ENST00000597618 STKLD1Q8NE28 680 aa10.91□□□□□ -0.66
TRIM28-210ENST00000597618 CEP76Q8TAP6 659 aa10.91□□□□□ -0.66
TRIM28-210ENST00000597618 SH3RF2Q8TEC5 729 aa10.91□□□□□ -0.66
TRIM28-210ENST00000597618 RLN3Q8WXF3 142 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms