RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 ARFIP2P53365 341 aa16.01■□□□□ 0.15
UPF1-204ENST00000596842 CDH8P55286 799 aa16.01■□□□□ 0.15
UPF1-204ENST00000596842 GPX6P59796 221 aa16.01■□□□□ 0.15
UPF1-204ENST00000596842 NR1H3Q13133 447 aa16.01■□□□□ 0.15
UPF1-204ENST00000596842 RCN1Q15293 331 aa16.01■□□□□ 0.15
UPF1-204ENST00000596842 NPNTQ6UXI9 565 aa16.01■□□□□ 0.15
UPF1-204ENST00000596842 DSTYKQ6XUX3 929 aa16.01■□□□□ 0.15
UPF1-204ENST00000596842 PDIK1LQ8N165 341 aa16.01■□□□□ 0.15
UPF1-204ENST00000596842 CYTH2Q99418 400 aa16.01■□□□□ 0.15
UPF1-204ENST00000596842 ST6GALNAC4Q9H4F1 302 aa16.01■□□□□ 0.15
UPF1-204ENST00000596842 PAPOLBQ9NRJ5 636 aaKnown RBP16.01■□□□□ 0.15
UPF1-204ENST00000596842 PEX11AO75192 247 aa16■□□□□ 0.15
UPF1-204ENST00000596842 ACO1P21399 889 aaKnown RBP16■□□□□ 0.15
UPF1-204ENST00000596842 HMGCS2P54868 508 aa16■□□□□ 0.15
UPF1-204ENST00000596842 SLC8A3P57103 927 aa16■□□□□ 0.15
UPF1-204ENST00000596842 PLEKHA7Q6IQ23 1121 aa16■□□□□ 0.15
UPF1-204ENST00000596842 C1orf228Q6PIY5 440 aa16■□□□□ 0.15
UPF1-204ENST00000596842 ZNF677Q86XU0 584 aa16■□□□□ 0.15
UPF1-204ENST00000596842 TMEM35BQ8NCS4 154 aa16■□□□□ 0.15
UPF1-204ENST00000596842 JOSD2Q8TAC2 188 aa16■□□□□ 0.15
UPF1-204ENST00000596842 STMN2Q93045 179 aa16■□□□□ 0.15
UPF1-204ENST00000596842 TSSK1BQ9BXA7 367 aa16■□□□□ 0.15
UPF1-204ENST00000596842 TRIM55Q9BYV6 548 aa16■□□□□ 0.15
UPF1-204ENST00000596842 MANSC1Q9H8J5 431 aa16■□□□□ 0.15
UPF1-204ENST00000596842 HEY1Q9Y5J3 304 aa16■□□□□ 0.15
UPF1-204ENST00000596842 H7C0C1 242 aa16■□□□□ 0.15
UPF1-204ENST00000596842 EGFRP00533 1210 aa16■□□□□ 0.15
UPF1-204ENST00000596842 T-ENOLP0DO92 83 aa16■□□□□ 0.15
UPF1-204ENST00000596842 ATP5OP48047 213 aa16■□□□□ 0.15
UPF1-204ENST00000596842 PSMC1P62191 440 aaKnown RBP16■□□□□ 0.15
UPF1-204ENST00000596842 SPDYE2Q495Y8 402 aa16■□□□□ 0.15
UPF1-204ENST00000596842 DARS2Q6PI48 645 aaKnown RBP16■□□□□ 0.15
UPF1-204ENST00000596842 UNC45BQ8IWX7 931 aa16■□□□□ 0.15
UPF1-204ENST00000596842 PDCD7Q8N8D1 485 aaKnown RBP16■□□□□ 0.15
UPF1-204ENST00000596842 STK32AQ8WU08 396 aa16■□□□□ 0.15
UPF1-204ENST00000596842 FBXL18Q96ME1 805 aa16■□□□□ 0.15
UPF1-204ENST00000596842 MECRQ9BV79 373 aa16■□□□□ 0.15
UPF1-204ENST00000596842 CISHQ9NSE2 258 aa16■□□□□ 0.15
UPF1-204ENST00000596842 ARL8BQ9NVJ2 186 aa16■□□□□ 0.15
UPF1-204ENST00000596842 CNTNAP1P78357 1384 aa16■□□□□ 0.15
UPF1-204ENST00000596842 WDR46O15213 610 aaKnown RBP16■□□□□ 0.15
UPF1-204ENST00000596842 NPM3O75607 178 aaKnown RBP16■□□□□ 0.15
UPF1-204ENST00000596842 ESRRAP11474 423 aaPredicted RBP16■□□□□ 0.15
UPF1-204ENST00000596842 KRT3P12035 628 aa16■□□□□ 0.15
UPF1-204ENST00000596842 CCNB1P14635 433 aa16■□□□□ 0.15
UPF1-204ENST00000596842 ABL2P42684 1182 aa16■□□□□ 0.15
UPF1-204ENST00000596842 YARSP54577 528 aaKnown RBP16■□□□□ 0.15
UPF1-204ENST00000596842 KDSRQ06136 332 aa16■□□□□ 0.15
UPF1-204ENST00000596842 ZNF252P-AS1Q0IIN9 211 aa16■□□□□ 0.15
UPF1-204ENST00000596842 KHDC1Q4VXA5 237 aaKnown RBP16■□□□□ 0.15
UPF1-204ENST00000596842 ATP11CQ8NB49 1132 aa16■□□□□ 0.15
UPF1-204ENST00000596842 TAF1LQ8IZX4 1826 aa16■□□□□ 0.15
UPF1-204ENST00000596842 hCG_1818297A0A087WSY0 165 aa15.99■□□□□ 0.15
UPF1-204ENST00000596842 WNT10BO00744 389 aa15.99■□□□□ 0.15
UPF1-204ENST00000596842 LYPLA2O95372 231 aa15.99■□□□□ 0.15
UPF1-204ENST00000596842 PYGBP11216 843 aa15.99■□□□□ 0.15
UPF1-204ENST00000596842 SNRPFP62306 86 aaKnown RBP15.99■□□□□ 0.15
UPF1-204ENST00000596842 PSMD6Q15008 389 aa15.99■□□□□ 0.15
UPF1-204ENST00000596842 MORF4L2Q15014 288 aa15.99■□□□□ 0.15
UPF1-204ENST00000596842 RNASEH2BQ5TBB1 312 aaKnown RBP15.99■□□□□ 0.15
UPF1-204ENST00000596842 LRRC71Q8N4P6 559 aa15.99■□□□□ 0.15
UPF1-204ENST00000596842 C10orf82Q8WW14 230 aa15.99■□□□□ 0.15
UPF1-204ENST00000596842 SLC7A6OSQ96CW6 309 aaPredicted RBP15.99■□□□□ 0.15
UPF1-204ENST00000596842 CYP39A1Q9NYL5 469 aa15.99■□□□□ 0.15
UPF1-204ENST00000596842 NUMBLQ9Y6R0 609 aa15.99■□□□□ 0.15
UPF1-204ENST00000596842 C10orf71Q711Q0 1435 aa15.99■□□□□ 0.15
UPF1-204ENST00000596842 SIPA1L1O43166 1804 aa15.99■□□□□ 0.15
UPF1-204ENST00000596842 TMEM191CA6NGB0 347 aa15.99■□□□□ 0.15
UPF1-204ENST00000596842 KRT36O76013 467 aa15.99■□□□□ 0.15
UPF1-204ENST00000596842 BAG2O95816 211 aa15.99■□□□□ 0.15
UPF1-204ENST00000596842 TMEM191BP0C7N4 346 aa15.99■□□□□ 0.15
UPF1-204ENST00000596842 RBP3P10745 1247 aa15.99■□□□□ 0.15
UPF1-204ENST00000596842 EIF3EP60228 445 aaKnown RBP15.99■□□□□ 0.15
UPF1-204ENST00000596842 MMRN1Q13201 1228 aa15.99■□□□□ 0.15
UPF1-204ENST00000596842 PTK7Q13308 1070 aa15.99■□□□□ 0.15
UPF1-204ENST00000596842 KPNB1Q14974 876 aaKnown RBP15.99■□□□□ 0.15
UPF1-204ENST00000596842 TSNAXIP1Q2TAA8 658 aa15.99■□□□□ 0.15
UPF1-204ENST00000596842 CCDC62Q6P9F0 684 aa15.99■□□□□ 0.15
UPF1-204ENST00000596842 SAMD3Q8N6K7 520 aa15.99■□□□□ 0.15
UPF1-204ENST00000596842 TIPINQ9BVW5 301 aa15.99■□□□□ 0.15
UPF1-204ENST00000596842 LRMDAQ9H2I8 198 aa15.99■□□□□ 0.15
UPF1-204ENST00000596842 MAD1L1Q9Y6D9 718 aa15.99■□□□□ 0.15
UPF1-204ENST00000596842 ALADP13716 330 aa15.99■□□□□ 0.15
UPF1-204ENST00000596842 MOGSQ13724 837 aa15.99■□□□□ 0.15
UPF1-204ENST00000596842 CLNKQ7Z7G1 428 aa15.99■□□□□ 0.15
UPF1-204ENST00000596842 RIBC1Q8N443 379 aaPredicted RBP15.99■□□□□ 0.15
UPF1-204ENST00000596842 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.99■□□□□ 0.15
UPF1-204ENST00000596842 TFAP2BQ92481 460 aa15.99■□□□□ 0.15
UPF1-204ENST00000596842 RILPQ96NA2 401 aa15.99■□□□□ 0.15
UPF1-204ENST00000596842 ZNF395Q9H8N7 513 aaPredicted RBP15.99■□□□□ 0.15
UPF1-204ENST00000596842 CLUHO75153 1309 aa15.99■□□□□ 0.15
UPF1-204ENST00000596842 ENO1P06733 434 aaKnown RBP15.98■□□□□ 0.15
UPF1-204ENST00000596842 TPBGLP0DKB5 382 aa15.98■□□□□ 0.15
UPF1-204ENST00000596842 MMP8P22894 467 aa15.98■□□□□ 0.15
UPF1-204ENST00000596842 RPL22P35268 128 aaKnown RBP15.98■□□□□ 0.15
UPF1-204ENST00000596842 ELK3P41970 407 aa15.98■□□□□ 0.15
UPF1-204ENST00000596842 BMPR2Q13873 1038 aa15.98■□□□□ 0.15
UPF1-204ENST00000596842 DLGAP2Q9P1A6 1054 aa15.98■□□□□ 0.15
UPF1-204ENST00000596842 POLIQ9UNA4 740 aa15.98■□□□□ 0.15
UPF1-204ENST00000596842 FAM237BA0A1B0GVD1 139 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms