RNA–Protein interactions for RNA: ENST00000595242.3

SCAF1-202, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 463 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-202ENST00000595242 FILIP1Q7Z7B0 1213 aa13.85□□□□□ -0.19
SCAF1-202ENST00000595242 ARID3BQ8IVW6 561 aaPredicted RBP13.85□□□□□ -0.19
SCAF1-202ENST00000595242 TPH2Q8IWU9 490 aa13.85□□□□□ -0.19
SCAF1-202ENST00000595242 NOC3LQ8WTT2 800 aaKnown RBP13.85□□□□□ -0.19
SCAF1-202ENST00000595242 NELFBQ8WX92 580 aa13.85□□□□□ -0.19
SCAF1-202ENST00000595242 DYDC2Q96IM9 177 aa13.85□□□□□ -0.19
SCAF1-202ENST00000595242 PRIMPOLQ96LW4 560 aa13.85□□□□□ -0.19
SCAF1-202ENST00000595242 PLIN2Q99541 437 aa13.85□□□□□ -0.19
SCAF1-202ENST00000595242 PDZD7Q9H5P4 517 aa13.85□□□□□ -0.19
SCAF1-202ENST00000595242 EXOC1Q9NV70 894 aa13.85□□□□□ -0.19
SCAF1-202ENST00000595242 PRMT7Q9NVM4 692 aaPredicted RBP13.85□□□□□ -0.19
SCAF1-202ENST00000595242 POLR3BQ9NW08 1133 aaPredicted RBP13.85□□□□□ -0.19
SCAF1-202ENST00000595242 ANKFY1Q9P2R3 1169 aa13.85□□□□□ -0.19
SCAF1-202ENST00000595242 A0A1W2PRU2 124 aa13.84□□□□□ -0.19
SCAF1-202ENST00000595242 MYMKA6NI61 221 aa13.84□□□□□ -0.19
SCAF1-202ENST00000595242 TTLL13PA6NNM8 815 aa13.84□□□□□ -0.19
SCAF1-202ENST00000595242 DPYSL4O14531 572 aa13.84□□□□□ -0.19
SCAF1-202ENST00000595242 PSMA7O14818 248 aa13.84□□□□□ -0.19
SCAF1-202ENST00000595242 N4BP3O15049 544 aa13.84□□□□□ -0.19
SCAF1-202ENST00000595242 CAPNS1P04632 268 aa13.84□□□□□ -0.19
SCAF1-202ENST00000595242 TERF1P54274 439 aa13.84□□□□□ -0.19
SCAF1-202ENST00000595242 ASIC1P78348 528 aa13.84□□□□□ -0.19
SCAF1-202ENST00000595242 PSMD2Q13200 908 aa13.84□□□□□ -0.19
SCAF1-202ENST00000595242 MCM6Q14566 821 aa13.84□□□□□ -0.19
SCAF1-202ENST00000595242 TMEM132AQ24JP5 1023 aa13.84□□□□□ -0.19
SCAF1-202ENST00000595242 ARMCX5Q6P1M9 558 aa13.84□□□□□ -0.19
SCAF1-202ENST00000595242 KCNK18Q7Z418 384 aa13.84□□□□□ -0.19
SCAF1-202ENST00000595242 UROC1Q96N76 676 aa13.84□□□□□ -0.19
SCAF1-202ENST00000595242 PPP1R10Q96QC0 940 aaKnown RBP13.84□□□□□ -0.19
SCAF1-202ENST00000595242 HHIPQ96QV1 700 aa13.84□□□□□ -0.19
SCAF1-202ENST00000595242 TMEM209Q96SK2 561 aa13.84□□□□□ -0.19
SCAF1-202ENST00000595242 GOLGA2P5Q9HBQ8 144 aa13.84□□□□□ -0.19
SCAF1-202ENST00000595242 FBXL5Q9UKA1 691 aa13.84□□□□□ -0.19
SCAF1-202ENST00000595242 ITIH6Q6UXX5 1313 aa13.84□□□□□ -0.19
SCAF1-202ENST00000595242 NAV2Q8IVL1 2488 aa13.84□□□□□ -0.19
SCAF1-202ENST00000595242 LRRIQ4A6NIV6 560 aa13.83□□□□□ -0.2
SCAF1-202ENST00000595242 PATE3B3GLJ2 98 aa13.83□□□□□ -0.2
SCAF1-202ENST00000595242 H7C4K7 107 aa13.83□□□□□ -0.2
SCAF1-202ENST00000595242 MARCH6O60337 910 aa13.83□□□□□ -0.2
SCAF1-202ENST00000595242 CDK11BP21127 795 aaKnown RBP13.83□□□□□ -0.2
SCAF1-202ENST00000595242 MUTP22033 750 aa13.83□□□□□ -0.2
SCAF1-202ENST00000595242 GBP1P32455 592 aa13.83□□□□□ -0.2
SCAF1-202ENST00000595242 CCT6AP40227 531 aaKnown RBP13.83□□□□□ -0.2
SCAF1-202ENST00000595242 STX17P56962 302 aa13.83□□□□□ -0.2
SCAF1-202ENST00000595242 IRX4P78413 519 aa13.83□□□□□ -0.2
SCAF1-202ENST00000595242 GRSF1Q12849 480 aaKnown RBP eCLIP13.83□□□□□ -0.2
SCAF1-202ENST00000595242 MRPL58Q14197 206 aaKnown RBP13.83□□□□□ -0.2
SCAF1-202ENST00000595242 ARID5BQ14865 1188 aa13.83□□□□□ -0.2
SCAF1-202ENST00000595242 ECM1Q16610 540 aa13.83□□□□□ -0.2
SCAF1-202ENST00000595242 COL28A1Q2UY09 1125 aa13.83□□□□□ -0.2
SCAF1-202ENST00000595242 ITPRIPL2Q3MIP1 535 aa13.83□□□□□ -0.2
SCAF1-202ENST00000595242 TMEM196Q5HYL7 178 aa13.83□□□□□ -0.2
SCAF1-202ENST00000595242 STXBP5Q5T5C0 1151 aa13.83□□□□□ -0.2
SCAF1-202ENST00000595242 NCAPH2Q6IBW4 605 aa13.83□□□□□ -0.2
SCAF1-202ENST00000595242 FSTL4Q6MZW2 842 aa13.83□□□□□ -0.2
SCAF1-202ENST00000595242 TTI2Q6NXR4 508 aa13.83□□□□□ -0.2
SCAF1-202ENST00000595242 CCDC112Q8NEF3 446 aa13.83□□□□□ -0.2
SCAF1-202ENST00000595242 ERMNQ8TAM6 284 aa13.83□□□□□ -0.2
SCAF1-202ENST00000595242 ADPGKQ9BRR6 497 aa13.83□□□□□ -0.2
SCAF1-202ENST00000595242 LRRC3Q9BY71 257 aa13.83□□□□□ -0.2
SCAF1-202ENST00000595242 POLR3FQ9H1D9 316 aaPredicted RBP13.83□□□□□ -0.2
SCAF1-202ENST00000595242 FZD8Q9H461 694 aa13.83□□□□□ -0.2
SCAF1-202ENST00000595242 SLC32A1Q9H598 525 aa13.83□□□□□ -0.2
SCAF1-202ENST00000595242 THAP9Q9H5L6 903 aa13.83□□□□□ -0.2
SCAF1-202ENST00000595242 AFF4Q9UHB7 1163 aaKnown RBP13.83□□□□□ -0.2
SCAF1-202ENST00000595242 ANK1P16157 1881 aa13.82□□□□□ -0.2
SCAF1-202ENST00000595242 SPAARA0A1B0GVQ0 90 aa13.82□□□□□ -0.2
SCAF1-202ENST00000595242 BICDL2A1A5D9 508 aa13.82□□□□□ -0.2
SCAF1-202ENST00000595242 SYN3O14994 580 aa13.82□□□□□ -0.2
SCAF1-202ENST00000595242 SLITRK3O94933 977 aa13.82□□□□□ -0.2
SCAF1-202ENST00000595242 EEF1GP26641 437 aaKnown RBP13.82□□□□□ -0.2
SCAF1-202ENST00000595242 RPA1P27694 616 aa13.82□□□□□ -0.2
SCAF1-202ENST00000595242 CACNB1Q02641 598 aaPredicted RBP13.82□□□□□ -0.2
SCAF1-202ENST00000595242 PRPF4BQ13523 1007 aaKnown RBP13.82□□□□□ -0.2
SCAF1-202ENST00000595242 FAM187BQ17R55 369 aa13.82□□□□□ -0.2
SCAF1-202ENST00000595242 CTXN3Q4LDR2 81 aa13.82□□□□□ -0.2
SCAF1-202ENST00000595242 SPECC1LQ69YQ0 1117 aa13.82□□□□□ -0.2
SCAF1-202ENST00000595242 GUF1Q8N442 669 aaKnown RBP13.82□□□□□ -0.2
SCAF1-202ENST00000595242 KIAA0895Q8NCT3 520 aa13.82□□□□□ -0.2
SCAF1-202ENST00000595242 DNAJC19Q96DA6 116 aa13.82□□□□□ -0.2
SCAF1-202ENST00000595242 BBC3Q96PG8 261 aaPredicted RBP13.82□□□□□ -0.2
SCAF1-202ENST00000595242 MKNK1Q9BUB5 465 aa13.82□□□□□ -0.2
SCAF1-202ENST00000595242 POLR3CQ9BUI4 534 aaPredicted RBP13.82□□□□□ -0.2
SCAF1-202ENST00000595242 MAFFQ9ULX9 164 aa13.82□□□□□ -0.2
SCAF1-202ENST00000595242 USP20Q9Y2K6 914 aa13.82□□□□□ -0.2
SCAF1-202ENST00000595242 PTPRBP23467 1997 aa13.82□□□□□ -0.2
SCAF1-202ENST00000595242 URB1O60287 2271 aaKnown RBP13.81□□□□□ -0.2
SCAF1-202ENST00000595242 APC2O95996 2303 aa13.81□□□□□ -0.2
SCAF1-202ENST00000595242 OBSL1O75147 1896 aa13.81□□□□□ -0.2
SCAF1-202ENST00000595242 FRMD3A2A2Y4 597 aa13.81□□□□□ -0.2
SCAF1-202ENST00000595242 FAM221BA6H8Z2 402 aa13.81□□□□□ -0.2
SCAF1-202ENST00000595242 EIF4E1BA6NMX2 242 aaKnown RBP13.81□□□□□ -0.2
SCAF1-202ENST00000595242 MEFVO15553 781 aaPredicted RBP13.81□□□□□ -0.2
SCAF1-202ENST00000595242 NRDCO43847 1150 aa13.81□□□□□ -0.2
SCAF1-202ENST00000595242 RNF40O75150 1001 aa13.81□□□□□ -0.2
SCAF1-202ENST00000595242 MED24O75448 989 aa13.81□□□□□ -0.2
SCAF1-202ENST00000595242 SKILP12757 684 aa13.81□□□□□ -0.2
SCAF1-202ENST00000595242 SIM1P81133 766 aaPredicted RBP13.81□□□□□ -0.2
SCAF1-202ENST00000595242 SOX4Q06945 474 aaPredicted RBP13.81□□□□□ -0.2
SCAF1-202ENST00000595242 STK4Q13043 487 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms