RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 GPD1LQ8N335 351 aa25.68■■□□□ 1.7
LSM4-202ENST00000593564 EBF3Q9H4W6 596 aa25.68■■□□□ 1.7
LSM4-202ENST00000593564 GTF3C4Q9UKN8 822 aa25.68■■□□□ 1.7
LSM4-202ENST00000593564 DENND4CQ5VZ89 1909 aa25.67■■□□□ 1.7
LSM4-202ENST00000593564 OTOL1A6NHN0 477 aaPredicted RBP25.67■■□□□ 1.7
LSM4-202ENST00000593564 TADA3O75528 432 aa25.67■■□□□ 1.7
LSM4-202ENST00000593564 PCSK1P29120 753 aa25.67■■□□□ 1.7
LSM4-202ENST00000593564 GRSF1Q12849 480 aaKnown RBP eCLIP25.67■■□□□ 1.7
LSM4-202ENST00000593564 TRIM68Q6AZZ1 485 aa25.67■■□□□ 1.7
LSM4-202ENST00000593564 CC2D1AQ6P1N0 951 aaPredicted RBP25.67■■□□□ 1.7
LSM4-202ENST00000593564 ARHGAP30Q7Z6I6 1101 aaPredicted RBP25.67■■□□□ 1.7
LSM4-202ENST00000593564 CCDC65Q8IXS2 484 aa25.67■■□□□ 1.7
LSM4-202ENST00000593564 ADGRF2Q8IZF7 708 aa25.67■■□□□ 1.7
LSM4-202ENST00000593564 NOC3LQ8WTT2 800 aaKnown RBP25.67■■□□□ 1.7
LSM4-202ENST00000593564 CHFRQ96EP1 664 aa25.67■■□□□ 1.7
LSM4-202ENST00000593564 FUBP3Q96I24 572 aaKnown RBP eCLIP25.67■■□□□ 1.7
LSM4-202ENST00000593564 ZSCAN16Q9H4T2 348 aaPredicted RBP25.67■■□□□ 1.7
LSM4-202ENST00000593564 TRDMT1O14717 391 aaKnown RBP25.66■■□□□ 1.7
LSM4-202ENST00000593564 NASPP49321 788 aaPredicted RBP25.66■■□□□ 1.7
LSM4-202ENST00000593564 AMPD2Q01433 879 aa25.66■■□□□ 1.7
LSM4-202ENST00000593564 PDGFRLQ15198 375 aa25.66■■□□□ 1.7
LSM4-202ENST00000593564 SOWAHAQ2M3V2 549 aa25.66■■□□□ 1.7
LSM4-202ENST00000593564 FSTL4Q6MZW2 842 aa25.66■■□□□ 1.7
LSM4-202ENST00000593564 SPATA2LQ8IUW3 424 aaPredicted RBP25.66■■□□□ 1.7
LSM4-202ENST00000593564 PDILTQ8N807 584 aa25.66■■□□□ 1.7
LSM4-202ENST00000593564 RIN3Q8TB24 985 aa25.66■■□□□ 1.7
LSM4-202ENST00000593564 ANKRD36BP1Q96IX9 119 aa25.66■■□□□ 1.7
LSM4-202ENST00000593564 SEMA4GQ9NTN9 838 aa25.66■■□□□ 1.7
LSM4-202ENST00000593564 INTS13Q9NVM9 706 aa25.66■■□□□ 1.7
LSM4-202ENST00000593564 DYNC1LI1Q9Y6G9 523 aaKnown RBP25.66■■□□□ 1.7
LSM4-202ENST00000593564 ARSAP15289 507 aa25.65■■□□□ 1.7
LSM4-202ENST00000593564 FAM160A1Q05DH4 1040 aa25.65■■□□□ 1.7
LSM4-202ENST00000593564 MYO1EQ12965 1108 aa25.65■■□□□ 1.7
LSM4-202ENST00000593564 CCDC142Q17RM4 750 aa25.65■■□□□ 1.7
LSM4-202ENST00000593564 STXBP4Q6ZWJ1 553 aa25.65■■□□□ 1.7
LSM4-202ENST00000593564 DPH6Q7L8W6 267 aa25.65■■□□□ 1.7
LSM4-202ENST00000593564 LIMS2Q7Z4I7 341 aa25.65■■□□□ 1.7
LSM4-202ENST00000593564 TNMDQ9H2S6 317 aa25.65■■□□□ 1.7
LSM4-202ENST00000593564 R3HCC1Q9Y3T6 440 aaKnown RBP25.65■■□□□ 1.7
LSM4-202ENST00000593564 OBSL1O75147 1896 aa25.64■■□□□ 1.7
LSM4-202ENST00000593564 ZNF233A6NK53 670 aa25.64■■□□□ 1.7
LSM4-202ENST00000593564 HCRTO43612 131 aa25.64■■□□□ 1.7
LSM4-202ENST00000593564 ATG13O75143 517 aa25.64■■□□□ 1.7
LSM4-202ENST00000593564 HOXC13P31276 330 aa25.64■■□□□ 1.7
LSM4-202ENST00000593564 MAGEA11P43364 429 aa25.64■■□□□ 1.7
LSM4-202ENST00000593564 SURF1Q15526 300 aa25.64■■□□□ 1.7
LSM4-202ENST00000593564 CSRP2Q16527 193 aa25.64■■□□□ 1.7
LSM4-202ENST00000593564 LMBRD2Q68DH5 695 aaPredicted RBP25.64■■□□□ 1.7
LSM4-202ENST00000593564 PKN3Q6P5Z2 889 aa25.64■■□□□ 1.7
LSM4-202ENST00000593564 FAM171BQ6P995 826 aa25.64■■□□□ 1.7
LSM4-202ENST00000593564 CEP68Q76N32 757 aa25.64■■□□□ 1.7
LSM4-202ENST00000593564 OR5B17Q8NGF7 314 aa25.64■■□□□ 1.7
LSM4-202ENST00000593564 NETO1Q8TDF5 533 aa25.64■■□□□ 1.7
LSM4-202ENST00000593564 LRRC27Q9C0I9 530 aa25.64■■□□□ 1.7
LSM4-202ENST00000593564 PTPRJQ12913 1337 aa25.63■■□□□ 1.69
LSM4-202ENST00000593564 CCDC163A0A0D9SF12 145 aa25.63■■□□□ 1.69
LSM4-202ENST00000593564 MTF1Q14872 753 aa25.63■■□□□ 1.69
LSM4-202ENST00000593564 STK38Q15208 465 aa25.63■■□□□ 1.69
LSM4-202ENST00000593564 PRR23CQ6ZRP0 262 aa25.63■■□□□ 1.69
LSM4-202ENST00000593564 CBWD2Q8IUF1 395 aa25.63■■□□□ 1.69
LSM4-202ENST00000593564 FAM160A2Q8N612 972 aaPredicted RBP25.63■■□□□ 1.69
LSM4-202ENST00000593564 LINC00301Q8NCQ3 95 aa25.63■■□□□ 1.69
LSM4-202ENST00000593564 GLIS3Q8NEA6 775 aa25.63■■□□□ 1.69
LSM4-202ENST00000593564 HPDLQ96IR7 371 aa25.63■■□□□ 1.69
LSM4-202ENST00000593564 KBTBD4Q9NVX7 518 aa25.63■■□□□ 1.69
LSM4-202ENST00000593564 TRAV19A0A0A6YYK7 116 aa25.62■■□□□ 1.69
LSM4-202ENST00000593564 STX6O43752 255 aa25.62■■□□□ 1.69
LSM4-202ENST00000593564 TNNC2P02585 160 aa25.62■■□□□ 1.69
LSM4-202ENST00000593564 USP17L7P0C7H9 530 aa25.62■■□□□ 1.69
LSM4-202ENST00000593564 ZNF77Q15935 545 aa25.62■■□□□ 1.69
LSM4-202ENST00000593564 DUOXA2Q1HG44 320 aa25.62■■□□□ 1.69
LSM4-202ENST00000593564 C4orf50Q6ZRC1 276 aa25.62■■□□□ 1.69
LSM4-202ENST00000593564 KBTBD7Q8WVZ9 684 aa25.62■■□□□ 1.69
LSM4-202ENST00000593564 HPS3Q969F9 1004 aa25.62■■□□□ 1.69
LSM4-202ENST00000593564 CUEDC2Q9H467 287 aa25.62■■□□□ 1.69
LSM4-202ENST00000593564 KIAA1586Q9HCI6 787 aa25.62■■□□□ 1.69
LSM4-202ENST00000593564 TRPC7Q9HCX4 862 aa25.62■■□□□ 1.69
LSM4-202ENST00000593564 HSPBP1Q9NZL4 362 aa25.62■■□□□ 1.69
LSM4-202ENST00000593564 CDH9Q9ULB4 789 aa25.62■■□□□ 1.69
LSM4-202ENST00000593564 DCDC2BA2VCK2 349 aa25.61■■□□□ 1.69
LSM4-202ENST00000593564 SLC30A4O14863 429 aa25.61■■□□□ 1.69
LSM4-202ENST00000593564 FOXD2O60548 495 aaPredicted RBP25.61■■□□□ 1.69
LSM4-202ENST00000593564 EGFP01133 1207 aa25.61■■□□□ 1.69
LSM4-202ENST00000593564 CKMP06732 381 aa25.61■■□□□ 1.69
LSM4-202ENST00000593564 DRD1P21728 446 aa25.61■■□□□ 1.69
LSM4-202ENST00000593564 USP4Q13107 963 aa25.61■■□□□ 1.69
LSM4-202ENST00000593564 E2F4Q16254 413 aa25.61■■□□□ 1.69
LSM4-202ENST00000593564 WDR49Q8IV35 697 aa25.61■■□□□ 1.69
LSM4-202ENST00000593564 SCN4BQ8IWT1 228 aa25.61■■□□□ 1.69
LSM4-202ENST00000593564 CPA6Q8N4T0 437 aa25.61■■□□□ 1.69
LSM4-202ENST00000593564 FSIP1Q8NA03 581 aa25.61■■□□□ 1.69
LSM4-202ENST00000593564 OSCP1Q8WVF1 389 aa25.61■■□□□ 1.69
LSM4-202ENST00000593564 EXOC4Q96A65 974 aa25.61■■□□□ 1.69
LSM4-202ENST00000593564 SLC22A12Q96S37 553 aa25.61■■□□□ 1.69
LSM4-202ENST00000593564 CYP2S1Q96SQ9 504 aa25.61■■□□□ 1.69
LSM4-202ENST00000593564 SYT15Q9BQS2 421 aa25.61■■□□□ 1.69
LSM4-202ENST00000593564 TRIM9Q9C026 710 aa25.61■■□□□ 1.69
LSM4-202ENST00000593564 GCNT4Q9P109 453 aa25.61■■□□□ 1.69
LSM4-202ENST00000593564 SLC8A2Q9UPR5 921 aa25.61■■□□□ 1.69
LSM4-202ENST00000593564 ZNF638Q14966 1978 aaKnown RBP25.61■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms