RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 SIX4Q9UIU6 781 aa12.5□□□□□ -0.41
LIG3-207ENST00000586119 FBXO2Q9UK22 296 aaPredicted RBP12.5□□□□□ -0.41
LIG3-207ENST00000586119 SLC8A2Q9UPR5 921 aa12.5□□□□□ -0.41
LIG3-207ENST00000586119 INVSQ9Y283 1065 aa12.5□□□□□ -0.41
LIG3-207ENST00000586119 WNT6Q9Y6F9 365 aa12.5□□□□□ -0.41
LIG3-207ENST00000586119 NUP205Q92621 2012 aa12.49□□□□□ -0.41
LIG3-207ENST00000586119 THADAQ6YHU6 1953 aa12.49□□□□□ -0.41
LIG3-207ENST00000586119 KIAA1549LQ6ZVL6 1849 aa12.49□□□□□ -0.41
LIG3-207ENST00000586119 PTPRJQ12913 1337 aa12.49□□□□□ -0.41
LIG3-207ENST00000586119 C2orf78A6NCI8 922 aa12.49□□□□□ -0.41
LIG3-207ENST00000586119 NOL4O94818 638 aa12.49□□□□□ -0.41
LIG3-207ENST00000586119 IL18RAPO95256 599 aa12.49□□□□□ -0.41
LIG3-207ENST00000586119 GCNT3O95395 438 aa12.49□□□□□ -0.41
LIG3-207ENST00000586119 KRT19P08727 400 aa12.49□□□□□ -0.41
LIG3-207ENST00000586119 CSH1P0DML2 217 aa12.49□□□□□ -0.41
LIG3-207ENST00000586119 CSH2P0DML3 217 aa12.49□□□□□ -0.41
LIG3-207ENST00000586119 CCDC192P0DO97 292 aa12.49□□□□□ -0.41
LIG3-207ENST00000586119 SCP2P22307 547 aa12.49□□□□□ -0.41
LIG3-207ENST00000586119 LMO2P25791 158 aa12.49□□□□□ -0.41
LIG3-207ENST00000586119 RAP1GAPP47736 663 aa12.49□□□□□ -0.41
LIG3-207ENST00000586119 ZXDBP98169 803 aa12.49□□□□□ -0.41
LIG3-207ENST00000586119 TSPY1Q01534 308 aa12.49□□□□□ -0.41
LIG3-207ENST00000586119 SMARCB1Q12824 385 aa12.49□□□□□ -0.41
LIG3-207ENST00000586119 POSTNQ15063 836 aa12.49□□□□□ -0.41
LIG3-207ENST00000586119 AASDHQ4L235 1098 aaPredicted RBP12.49□□□□□ -0.41
LIG3-207ENST00000586119 INTS6LQ5JSJ4 861 aaKnown RBP12.49□□□□□ -0.41
LIG3-207ENST00000586119 L1TD1Q5T7N2 865 aaKnown RBP12.49□□□□□ -0.41
LIG3-207ENST00000586119 TCEAL6Q6IPX3 200 aa12.49□□□□□ -0.41
LIG3-207ENST00000586119 CACNA2D4Q7Z3S7 1137 aa12.49□□□□□ -0.41
LIG3-207ENST00000586119 SCN4BQ8IWT1 228 aa12.49□□□□□ -0.41
LIG3-207ENST00000586119 ARL14EPQ8N8R7 260 aaPredicted RBP12.49□□□□□ -0.41
LIG3-207ENST00000586119 RPLP0P6Q8NHW5 317 aa12.49□□□□□ -0.41
LIG3-207ENST00000586119 MRPS31Q92665 395 aaKnown RBP12.49□□□□□ -0.41
LIG3-207ENST00000586119 TCEAL3Q969E4 200 aa12.49□□□□□ -0.41
LIG3-207ENST00000586119 HPS3Q969F9 1004 aa12.49□□□□□ -0.41
LIG3-207ENST00000586119 SNX21Q969T3 373 aa12.49□□□□□ -0.41
LIG3-207ENST00000586119 ACCSQ96QU6 501 aa12.49□□□□□ -0.41
LIG3-207ENST00000586119 P2RY13Q9BPV8 354 aa12.49□□□□□ -0.41
LIG3-207ENST00000586119 ACBD6Q9BR61 282 aa12.49□□□□□ -0.41
LIG3-207ENST00000586119 ECT2Q9H8V3 914 aa12.49□□□□□ -0.41
LIG3-207ENST00000586119 SNX9Q9Y5X1 595 aa12.49□□□□□ -0.41
LIG3-207ENST00000586119 GON4LQ3T8J9 2241 aa12.49□□□□□ -0.41
LIG3-207ENST00000586119 MYO18AQ92614 2054 aaKnown RBP12.49□□□□□ -0.41
LIG3-207ENST00000586119 VPS37CA5D8V6 355 aaPredicted RBP12.48□□□□□ -0.41
LIG3-207ENST00000586119 EPN2O95208 641 aa12.48□□□□□ -0.41
LIG3-207ENST00000586119 ZNF806P0C7X5 589 aa12.48□□□□□ -0.41
LIG3-207ENST00000586119 IDEP14735 1019 aa12.48□□□□□ -0.41
LIG3-207ENST00000586119 POU5F1Q01860 360 aaKnown RBP12.48□□□□□ -0.41
LIG3-207ENST00000586119 PSMD2Q13200 908 aa12.48□□□□□ -0.41
LIG3-207ENST00000586119 MTF1Q14872 753 aa12.48□□□□□ -0.41
LIG3-207ENST00000586119 ZNF77Q15935 545 aa12.48□□□□□ -0.41
LIG3-207ENST00000586119 SOWAHAQ2M3V2 549 aa12.48□□□□□ -0.41
LIG3-207ENST00000586119 PLK5Q496M5 336 aa12.48□□□□□ -0.41
LIG3-207ENST00000586119 PLA2G2CQ5R387 149 aa12.48□□□□□ -0.41
LIG3-207ENST00000586119 RRAGBQ5VZM2 374 aa12.48□□□□□ -0.41
LIG3-207ENST00000586119 CC2D1AQ6P1N0 951 aaPredicted RBP12.48□□□□□ -0.41
LIG3-207ENST00000586119 OR5B17Q8NGF7 314 aa12.48□□□□□ -0.41
LIG3-207ENST00000586119 CHAMP1Q96JM3 812 aa12.48□□□□□ -0.41
LIG3-207ENST00000586119 ZNF560Q96MR9 790 aa12.48□□□□□ -0.41
LIG3-207ENST00000586119 MTMR12Q9C0I1 747 aa12.48□□□□□ -0.41
LIG3-207ENST00000586119 DUSP15Q9H1R2 295 aaPredicted RBP12.48□□□□□ -0.41
LIG3-207ENST00000586119 DUS2Q9NX74 493 aaKnown RBP12.48□□□□□ -0.41
LIG3-207ENST00000586119 RBAKQ9NYW8 714 aaPredicted RBP12.48□□□□□ -0.41
LIG3-207ENST00000586119 GCNT4Q9P109 453 aa12.48□□□□□ -0.41
LIG3-207ENST00000586119 NME7Q9Y5B8 376 aa12.48□□□□□ -0.41
LIG3-207ENST00000586119 CHD8Q9HCK8 2581 aa12.48□□□□□ -0.41
LIG3-207ENST00000586119 PTPRDP23468 1912 aa12.47□□□□□ -0.41
LIG3-207ENST00000586119 GABRDO14764 452 aa12.47□□□□□ -0.41
LIG3-207ENST00000586119 SCAMP3O14828 347 aaKnown RBP12.47□□□□□ -0.41
LIG3-207ENST00000586119 HUS1O60921 280 aa12.47□□□□□ -0.41
LIG3-207ENST00000586119 BMP15O95972 392 aa12.47□□□□□ -0.41
LIG3-207ENST00000586119 PDGFRBP09619 1106 aa12.47□□□□□ -0.41
LIG3-207ENST00000586119 DDX6P26196 483 aaKnown RBP eCLIP12.47□□□□□ -0.41
LIG3-207ENST00000586119 USP46P62068 366 aa12.47□□□□□ -0.41
LIG3-207ENST00000586119 PSMC1P62191 440 aaKnown RBP12.47□□□□□ -0.41
LIG3-207ENST00000586119 FAM160A1Q05DH4 1040 aa12.47□□□□□ -0.41
LIG3-207ENST00000586119 NFE2Q16621 373 aaPredicted RBP12.47□□□□□ -0.41
LIG3-207ENST00000586119 ST3GAL2Q16842 350 aa12.47□□□□□ -0.41
LIG3-207ENST00000586119 EML3Q32P44 896 aa12.47□□□□□ -0.41
LIG3-207ENST00000586119 STPG1Q5TH74 334 aa12.47□□□□□ -0.41
LIG3-207ENST00000586119 FAM171BQ6P995 826 aa12.47□□□□□ -0.41
LIG3-207ENST00000586119 SV2BQ7L1I2 683 aa12.47□□□□□ -0.41
LIG3-207ENST00000586119 BRAPQ7Z569 592 aa12.47□□□□□ -0.41
LIG3-207ENST00000586119 NT5DC4Q86YG4 428 aa12.47□□□□□ -0.41
LIG3-207ENST00000586119 SFTPA1Q8IWL2 248 aa12.47□□□□□ -0.41
LIG3-207ENST00000586119 ADGRF2Q8IZF7 708 aa12.47□□□□□ -0.41
LIG3-207ENST00000586119 C12orf50Q8NA57 414 aaPredicted RBP12.47□□□□□ -0.41
LIG3-207ENST00000586119 SH3RF2Q8TEC5 729 aa12.47□□□□□ -0.41
LIG3-207ENST00000586119 OSCP1Q8WVF1 389 aa12.47□□□□□ -0.41
LIG3-207ENST00000586119 KBTBD7Q8WVZ9 684 aa12.47□□□□□ -0.41
LIG3-207ENST00000586119 HVCN1Q96D96 273 aa12.47□□□□□ -0.41
LIG3-207ENST00000586119 MYRFLQ96LU7 910 aa12.47□□□□□ -0.41
LIG3-207ENST00000586119 CRTAC1Q9NQ79 661 aa12.47□□□□□ -0.41
LIG3-207ENST00000586119 CCDC39Q9UFE4 941 aa12.47□□□□□ -0.41
LIG3-207ENST00000586119 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.47□□□□□ -0.41
LIG3-207ENST00000586119 SRPRBQ9Y5M8 271 aaKnown RBP12.47□□□□□ -0.41
LIG3-207ENST00000586119 HELZP42694 1942 aaKnown RBP12.47□□□□□ -0.41
LIG3-207ENST00000586119 CCDC163A0A0D9SF12 145 aa12.46□□□□□ -0.41
LIG3-207ENST00000586119 ATG13O75143 517 aa12.46□□□□□ -0.41
LIG3-207ENST00000586119 DRD1P21728 446 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms