RNA–Protein interactions for RNA: ENST00000585847.5

VMP1-202, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-202ENST00000585847 TOP6BLQ8N6T0 577 aa13.44□□□□□ -0.26
VMP1-202ENST00000585847 UBR7Q8N806 425 aa13.44□□□□□ -0.26
VMP1-202ENST00000585847 KAT5Q92993 513 aa13.44□□□□□ -0.26
VMP1-202ENST00000585847 HLA-CQ95604 372 aa13.44□□□□□ -0.26
VMP1-202ENST00000585847 MRPL38Q96DV4 380 aaKnown RBP13.44□□□□□ -0.26
VMP1-202ENST00000585847 KREMEN1Q96MU8 473 aa13.44□□□□□ -0.26
VMP1-202ENST00000585847 ALS2CR12Q96Q35 445 aa13.44□□□□□ -0.26
VMP1-202ENST00000585847 TMEM209Q96SK2 561 aa13.44□□□□□ -0.26
VMP1-202ENST00000585847 ARID3AQ99856 593 aa13.44□□□□□ -0.26
VMP1-202ENST00000585847 CLSTN3Q9BQT9 956 aa13.44□□□□□ -0.26
VMP1-202ENST00000585847 MRPL45Q9BRJ2 306 aaKnown RBP13.44□□□□□ -0.26
VMP1-202ENST00000585847 SYT11Q9BT88 431 aa13.44□□□□□ -0.26
VMP1-202ENST00000585847 RXFP1Q9HBX9 757 aa13.44□□□□□ -0.26
VMP1-202ENST00000585847 MTRRQ9UBK8 725 aa13.44□□□□□ -0.26
VMP1-202ENST00000585847 NXF1Q9UBU9 619 aaKnown RBP13.44□□□□□ -0.26
VMP1-202ENST00000585847 HCN4Q9Y3Q4 1203 aa13.44□□□□□ -0.26
VMP1-202ENST00000585847 CEP83Q9Y592 693 aa13.44□□□□□ -0.26
VMP1-202ENST00000585847 PAXBP1Q9Y5B6 917 aa13.44□□□□□ -0.26
VMP1-202ENST00000585847 MTCL1Q9Y4B5 1905 aaKnown RBP13.44□□□□□ -0.26
VMP1-202ENST00000585847 FOXN3O00409 490 aaPredicted RBP13.43□□□□□ -0.26
VMP1-202ENST00000585847 C2CD2LO14523 706 aa13.43□□□□□ -0.26
VMP1-202ENST00000585847 TRAPPC3O43617 180 aa13.43□□□□□ -0.26
VMP1-202ENST00000585847 CLSTN1O94985 981 aa13.43□□□□□ -0.26
VMP1-202ENST00000585847 OAZ2O95190 189 aa13.43□□□□□ -0.26
VMP1-202ENST00000585847 CXCL14O95715 111 aa13.43□□□□□ -0.26
VMP1-202ENST00000585847 MYBL1P10243 752 aa13.43□□□□□ -0.26
VMP1-202ENST00000585847 ODC1P11926 461 aa13.43□□□□□ -0.26
VMP1-202ENST00000585847 CYP11B1P15538 503 aa13.43□□□□□ -0.26
VMP1-202ENST00000585847 RPL17P18621 184 aaKnown RBP13.43□□□□□ -0.26
VMP1-202ENST00000585847 MAGEA1P43355 309 aa13.43□□□□□ -0.26
VMP1-202ENST00000585847 ZNF132P52740 706 aa13.43□□□□□ -0.26
VMP1-202ENST00000585847 INCA1Q0VD86 236 aa13.43□□□□□ -0.26
VMP1-202ENST00000585847 TCEAL1Q15170 157 aa13.43□□□□□ -0.26
VMP1-202ENST00000585847 ALKBH5Q6P6C2 394 aaKnown RBP13.43□□□□□ -0.26
VMP1-202ENST00000585847 GJB7Q6PEY0 223 aa13.43□□□□□ -0.26
VMP1-202ENST00000585847 TMC7Q7Z402 723 aa13.43□□□□□ -0.26
VMP1-202ENST00000585847 UNC93AQ86WB7 457 aa13.43□□□□□ -0.26
VMP1-202ENST00000585847 MRPL43Q8N983 215 aaKnown RBP13.43□□□□□ -0.26
VMP1-202ENST00000585847 TRIM58Q8NG06 486 aa13.43□□□□□ -0.26
VMP1-202ENST00000585847 OR10T2Q8NGX3 314 aa13.43□□□□□ -0.26
VMP1-202ENST00000585847 KIF18AQ8NI77 898 aa13.43□□□□□ -0.26
VMP1-202ENST00000585847 RIN2Q8WYP3 895 aaPredicted RBP13.43□□□□□ -0.26
VMP1-202ENST00000585847 KLHL5Q96PQ7 755 aa13.43□□□□□ -0.26
VMP1-202ENST00000585847 AGPAT1Q99943 283 aa13.43□□□□□ -0.26
VMP1-202ENST00000585847 ZNF518BQ9C0D4 1074 aa13.43□□□□□ -0.26
VMP1-202ENST00000585847 PUF60Q9UHX1 559 aaKnown RBP13.43□□□□□ -0.26
VMP1-202ENST00000585847 NAGPAQ9UK23 515 aa13.43□□□□□ -0.26
VMP1-202ENST00000585847 NENFQ9UMX5 172 aa13.43□□□□□ -0.26
VMP1-202ENST00000585847 PCDHA13Q9Y5I0 950 aa13.43□□□□□ -0.26
VMP1-202ENST00000585847 PTPRDP23468 1912 aa13.43□□□□□ -0.26
VMP1-202ENST00000585847 TACC1O75410 805 aa13.42□□□□□ -0.26
VMP1-202ENST00000585847 VNN2O95498 520 aa13.42□□□□□ -0.26
VMP1-202ENST00000585847 CNPP09543 421 aaKnown RBP13.42□□□□□ -0.26
VMP1-202ENST00000585847 H2AFZP0C0S5 128 aa13.42□□□□□ -0.26
VMP1-202ENST00000585847 KRT5P13647 590 aa13.42□□□□□ -0.26
VMP1-202ENST00000585847 ACO1P21399 889 aaKnown RBP13.42□□□□□ -0.26
VMP1-202ENST00000585847 TNFAIP3P21580 790 aa13.42□□□□□ -0.26
VMP1-202ENST00000585847 WARSP23381 471 aaKnown RBP13.42□□□□□ -0.26
VMP1-202ENST00000585847 LMO2P25791 158 aa13.42□□□□□ -0.26
VMP1-202ENST00000585847 ARID5AQ03989 594 aa13.42□□□□□ -0.26
VMP1-202ENST00000585847 SMC1AQ14683 1233 aaKnown RBP13.42□□□□□ -0.26
VMP1-202ENST00000585847 PSMD5Q16401 504 aa13.42□□□□□ -0.26
VMP1-202ENST00000585847 CCDC142Q17RM4 750 aa13.42□□□□□ -0.26
VMP1-202ENST00000585847 SCARA5Q6ZMJ2 495 aa13.42□□□□□ -0.26
VMP1-202ENST00000585847 H2AFVQ71UI9 128 aa13.42□□□□□ -0.26
VMP1-202ENST00000585847 ZNF571Q7Z3V5 609 aaPredicted RBP13.42□□□□□ -0.26
VMP1-202ENST00000585847 REXO1L1PQ8IX06 675 aa13.42□□□□□ -0.26
VMP1-202ENST00000585847 RHOT2Q8IXI1 618 aa13.42□□□□□ -0.26
VMP1-202ENST00000585847 ADGRF2Q8IZF7 708 aa13.42□□□□□ -0.26
VMP1-202ENST00000585847 MSANTD4Q8NCY6 345 aa13.42□□□□□ -0.26
VMP1-202ENST00000585847 APPL2Q8NEU8 664 aa13.42□□□□□ -0.26
VMP1-202ENST00000585847 SLC30A5Q8TAD4 765 aa13.42□□□□□ -0.26
VMP1-202ENST00000585847 WHAMMQ8TF30 809 aa13.42□□□□□ -0.26
VMP1-202ENST00000585847 VCPIP1Q96JH7 1222 aa13.42□□□□□ -0.26
VMP1-202ENST00000585847 PKMYT1Q99640 499 aa13.42□□□□□ -0.26
VMP1-202ENST00000585847 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.42□□□□□ -0.26
VMP1-202ENST00000585847 MIS12Q9H081 205 aa13.42□□□□□ -0.26
VMP1-202ENST00000585847 NGRNQ9NPE2 291 aaKnown RBP13.42□□□□□ -0.26
VMP1-202ENST00000585847 ENTPD7Q9NQZ7 604 aa13.42□□□□□ -0.26
VMP1-202ENST00000585847 CISHQ9NSE2 258 aa13.42□□□□□ -0.26
VMP1-202ENST00000585847 LMCD1Q9NZU5 365 aa13.42□□□□□ -0.26
VMP1-202ENST00000585847 FNIP2Q9P278 1114 aa13.42□□□□□ -0.26
VMP1-202ENST00000585847 STK39Q9UEW8 545 aa13.42□□□□□ -0.26
VMP1-202ENST00000585847 ADAMTS1Q9UHI8 967 aa13.42□□□□□ -0.26
VMP1-202ENST00000585847 BACE2Q9Y5Z0 518 aa13.42□□□□□ -0.26
VMP1-202ENST00000585847 TEX28O15482 410 aa13.41□□□□□ -0.26
VMP1-202ENST00000585847 HUS1O60921 280 aa13.41□□□□□ -0.26
VMP1-202ENST00000585847 URODP06132 367 aa13.41□□□□□ -0.26
VMP1-202ENST00000585847 WEE2P0C1S8 567 aa13.41□□□□□ -0.26
VMP1-202ENST00000585847 TMEM253P0C7T8 217 aa13.41□□□□□ -0.26
VMP1-202ENST00000585847 GTF2F1P35269 517 aaKnown RBP eCLIP13.41□□□□□ -0.26
VMP1-202ENST00000585847 USP8P40818 1118 aa13.41□□□□□ -0.26
VMP1-202ENST00000585847 SNX16P57768 344 aa13.41□□□□□ -0.26
VMP1-202ENST00000585847 YWHAHQ04917 246 aaPredicted RBP13.41□□□□□ -0.26
VMP1-202ENST00000585847 KCNC3Q14003 757 aa13.41□□□□□ -0.26
VMP1-202ENST00000585847 MTF1Q14872 753 aa13.41□□□□□ -0.26
VMP1-202ENST00000585847 DNTTIP2Q5QJE6 756 aaKnown RBP13.41□□□□□ -0.26
VMP1-202ENST00000585847 CCDC122Q5T0U0 273 aa13.41□□□□□ -0.26
VMP1-202ENST00000585847 OVOS1Q6IE37 1185 aa13.41□□□□□ -0.26
VMP1-202ENST00000585847 PDE12Q6L8Q7 609 aaKnown RBP13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms