RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 DNAAF5Q86Y56 855 aa11.01□□□□□ -0.65
LIG3-203ENST00000585370 SLC4A11Q8NBS3 891 aa11.01□□□□□ -0.65
LIG3-203ENST00000585370 WHAMMQ8TF30 809 aa11.01□□□□□ -0.65
LIG3-203ENST00000585370 TSC1Q92574 1164 aa11.01□□□□□ -0.65
LIG3-203ENST00000585370 PGBD4Q96DM1 585 aa11.01□□□□□ -0.65
LIG3-203ENST00000585370 HEXIM2Q96MH2 286 aaKnown RBP11.01□□□□□ -0.65
LIG3-203ENST00000585370 ZMAT2Q96NC0 199 aaKnown RBP11.01□□□□□ -0.65
LIG3-203ENST00000585370 RAD9AQ99638 391 aa11.01□□□□□ -0.65
LIG3-203ENST00000585370 ZBED2Q9BTP6 218 aa11.01□□□□□ -0.65
LIG3-203ENST00000585370 PARD6BQ9BYG5 372 aa11.01□□□□□ -0.65
LIG3-203ENST00000585370 FAM105AQ9NUU6 356 aa11.01□□□□□ -0.65
LIG3-203ENST00000585370 RAB21Q9UL25 225 aa11.01□□□□□ -0.65
LIG3-203ENST00000585370 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.01□□□□□ -0.65
LIG3-203ENST00000585370 CCDC151A5D8V7 595 aa11□□□□□ -0.65
LIG3-203ENST00000585370 PGRMC1O00264 195 aaKnown RBP11□□□□□ -0.65
LIG3-203ENST00000585370 DDX3YO15523 660 aaKnown RBP11□□□□□ -0.65
LIG3-203ENST00000585370 CEP104O60308 925 aa11□□□□□ -0.65
LIG3-203ENST00000585370 COL9A1P20849 921 aa11□□□□□ -0.65
LIG3-203ENST00000585370 COMTP21964 271 aa11□□□□□ -0.65
LIG3-203ENST00000585370 AKAP5P24588 427 aa11□□□□□ -0.65
LIG3-203ENST00000585370 BRD2P25440 801 aaKnown RBP11□□□□□ -0.65
LIG3-203ENST00000585370 CXCR5P32302 372 aa11□□□□□ -0.65
LIG3-203ENST00000585370 RPL9P32969 192 aaKnown RBP11□□□□□ -0.65
LIG3-203ENST00000585370 MAN1A1P33908 653 aa11□□□□□ -0.65
LIG3-203ENST00000585370 TAF6P49848 677 aa11□□□□□ -0.65
LIG3-203ENST00000585370 GSCP56915 257 aaPredicted RBP11□□□□□ -0.65
LIG3-203ENST00000585370 PTP4A2Q12974 167 aa11□□□□□ -0.65
LIG3-203ENST00000585370 PAK2Q13177 524 aa11□□□□□ -0.65
LIG3-203ENST00000585370 ZNF268Q14587 947 aaPredicted RBP11□□□□□ -0.65
LIG3-203ENST00000585370 AAK1Q2M2I8 961 aa11□□□□□ -0.65
LIG3-203ENST00000585370 ZNF394Q53GI3 561 aa11□□□□□ -0.65
LIG3-203ENST00000585370 SCARA3Q6AZY7 606 aa11□□□□□ -0.65
LIG3-203ENST00000585370 FAM117BQ6P1L5 589 aa11□□□□□ -0.65
LIG3-203ENST00000585370 WDR93Q6P2C0 686 aa11□□□□□ -0.65
LIG3-203ENST00000585370 GADD45GIP1Q8TAE8 222 aaPredicted RBP11□□□□□ -0.65
LIG3-203ENST00000585370 FEZF2Q8TBJ5 459 aa11□□□□□ -0.65
LIG3-203ENST00000585370 HNRNPLLQ8WVV9 542 aaKnown RBP11□□□□□ -0.65
LIG3-203ENST00000585370 APOL6Q9BWW8 343 aa11□□□□□ -0.65
LIG3-203ENST00000585370 OSBPL7Q9BZF2 842 aa11□□□□□ -0.65
LIG3-203ENST00000585370 ELOVL4Q9GZR5 314 aa11□□□□□ -0.65
LIG3-203ENST00000585370 SDCBP2Q9H190 292 aa11□□□□□ -0.65
LIG3-203ENST00000585370 SMYD3Q9H7B4 428 aa11□□□□□ -0.65
LIG3-203ENST00000585370 IP6K2Q9UHH9 426 aa11□□□□□ -0.65
LIG3-203ENST00000585370 HES2Q9Y543 173 aa11□□□□□ -0.65
LIG3-203ENST00000585370 PCDHA3Q9Y5H8 950 aa11□□□□□ -0.65
LIG3-203ENST00000585370 CITO14578 2027 aa11□□□□□ -0.65
LIG3-203ENST00000585370 A0A0U1RQF3 1178 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 LINC01553A4QN01 128 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 KPNA7A9QM74 516 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 SPOPO43791 374 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 EFCAB14O75071 495 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 PROSCO94903 275 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 THP07101 528 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 SETSIPP0DME0 302 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 RRM1P23921 792 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 CTNNA1P35221 906 aaKnown RBP10.99□□□□□ -0.65
LIG3-203ENST00000585370 NDST1P52848 882 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 CDH8P55286 799 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 RWDD2BP57060 319 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 ERVK-21P61565 698 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 MAMLD1Q13495 774 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 DSC3Q14574 896 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 MAP9Q49MG5 647 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 TMCO3Q6UWJ1 677 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 LCLAT1Q6UWP7 414 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 MMS22LQ6ZRQ5 1243 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 LIMS2Q7Z4I7 341 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 TOP6BLQ8N6T0 577 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 C3orf20Q8ND61 904 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 DBF4BQ8NFT6 615 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 SPATA18Q8TC71 538 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 GDPD5Q8WTR4 605 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 MAIP1Q8WWC4 291 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 TFAP2BQ92481 460 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 HLA-CQ95604 372 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 DDX27Q96GQ7 796 aaKnown RBP10.99□□□□□ -0.65
LIG3-203ENST00000585370 PPP1R10Q96QC0 940 aaKnown RBP10.99□□□□□ -0.65
LIG3-203ENST00000585370 ZSWIM1Q9BR11 485 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 RNF39Q9H2S5 420 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 ANKZF1Q9H8Y5 726 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 LMCD1Q9NZU5 365 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 RAPGEFL1Q9UHV5 662 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 ANAPC7Q9UJX3 599 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 TMEM59LQ9UK28 342 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 MTUS1Q9ULD2 1270 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 PADI3Q9ULW8 664 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 PACSIN2Q9UNF0 486 aaPredicted RBP10.99□□□□□ -0.65
LIG3-203ENST00000585370 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.99□□□□□ -0.65
LIG3-203ENST00000585370 SNX9Q9Y5X1 595 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 RALGAPA2Q2PPJ7 1873 aa10.99□□□□□ -0.65
LIG3-203ENST00000585370 GOLGA6L10A0A0M3HER8 536 aa10.98□□□□□ -0.65
LIG3-203ENST00000585370 ARHGEF37A1IGU5 675 aa10.98□□□□□ -0.65
LIG3-203ENST00000585370 HUS1O60921 280 aa10.98□□□□□ -0.65
LIG3-203ENST00000585370 CALCAP01258 141 aa10.98□□□□□ -0.65
LIG3-203ENST00000585370 CTSHP09668 335 aa10.98□□□□□ -0.65
LIG3-203ENST00000585370 GNL1P36915 607 aaPredicted RBP10.98□□□□□ -0.65
LIG3-203ENST00000585370 CETN2P41208 172 aa10.98□□□□□ -0.65
LIG3-203ENST00000585370 RAP1GAPP47736 663 aa10.98□□□□□ -0.65
LIG3-203ENST00000585370 GABRB2P47870 512 aa10.98□□□□□ -0.65
LIG3-203ENST00000585370 PEX5P50542 639 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms