RNA–Protein interactions for RNA: ENST00000585031.2

TOP3A-220, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 4

Gene TOP3A, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-220ENST00000585031 ZIC2O95409 532 aaPredicted RBP19.55■□□□□ 0.72
TOP3A-220ENST00000585031 NFICP08651 508 aa19.55■□□□□ 0.72
TOP3A-220ENST00000585031 PLS3P13797 630 aa19.55■□□□□ 0.72
TOP3A-220ENST00000585031 PTGER3P43115 390 aa19.55■□□□□ 0.72
TOP3A-220ENST00000585031 MATR3P43243 847 aaKnown RBP eCLIP19.55■□□□□ 0.72
TOP3A-220ENST00000585031 SEC13P55735 322 aa19.55■□□□□ 0.72
TOP3A-220ENST00000585031 MESP2Q0VG99 397 aa19.55■□□□□ 0.72
TOP3A-220ENST00000585031 TRIM29Q14134 588 aa19.55■□□□□ 0.72
TOP3A-220ENST00000585031 PDIA5Q14554 519 aa19.55■□□□□ 0.72
TOP3A-220ENST00000585031 ZNF268Q14587 947 aaPredicted RBP19.55■□□□□ 0.72
TOP3A-220ENST00000585031 MTF1Q14872 753 aa19.55■□□□□ 0.72
TOP3A-220ENST00000585031 TAF12Q16514 161 aa19.55■□□□□ 0.72
TOP3A-220ENST00000585031 GAB4Q2WGN9 574 aa19.55■□□□□ 0.72
TOP3A-220ENST00000585031 C2orf27AQ580R0 203 aa19.55■□□□□ 0.72
TOP3A-220ENST00000585031 TRIM61Q5EBN2 209 aa19.55■□□□□ 0.72
TOP3A-220ENST00000585031 CC2D1AQ6P1N0 951 aaPredicted RBP19.55■□□□□ 0.72
TOP3A-220ENST00000585031 CHCHD4Q8N4Q1 142 aa19.55■□□□□ 0.72
TOP3A-220ENST00000585031 CCDC33Q8N5R6 958 aa19.55■□□□□ 0.72
TOP3A-220ENST00000585031 OSCP1Q8WVF1 389 aa19.55■□□□□ 0.72
TOP3A-220ENST00000585031 ACDQ96AP0 544 aa19.55■□□□□ 0.72
TOP3A-220ENST00000585031 KIF9Q9HAQ2 790 aa19.55■□□□□ 0.72
TOP3A-220ENST00000585031 DUS2Q9NX74 493 aaKnown RBP19.55■□□□□ 0.72
TOP3A-220ENST00000585031 ABI2Q9NYB9 513 aaPredicted RBP19.55■□□□□ 0.72
TOP3A-220ENST00000585031 MBD1Q9UIS9 605 aaPredicted RBP19.55■□□□□ 0.72
TOP3A-220ENST00000585031 PCDH15Q96QU1 1955 aa19.54■□□□□ 0.72
TOP3A-220ENST00000585031 NPHP3-ACAD11A0A0J9YXS1 232 aa19.54■□□□□ 0.72
TOP3A-220ENST00000585031 ENGP17813 658 aa19.54■□□□□ 0.72
TOP3A-220ENST00000585031 GUCY2CP25092 1073 aa19.54■□□□□ 0.72
TOP3A-220ENST00000585031 OPRD1P41143 372 aa19.54■□□□□ 0.72
TOP3A-220ENST00000585031 ORC2Q13416 577 aaPredicted RBP19.54■□□□□ 0.72
TOP3A-220ENST00000585031 ZC2HC1CQ53FD0 456 aaPredicted RBP19.54■□□□□ 0.72
TOP3A-220ENST00000585031 WSCD1Q658N2 575 aa19.54■□□□□ 0.72
TOP3A-220ENST00000585031 ARMCX6Q7L4S7 300 aa19.54■□□□□ 0.72
TOP3A-220ENST00000585031 CPA6Q8N4T0 437 aa19.54■□□□□ 0.72
TOP3A-220ENST00000585031 TTC16Q8NEE8 873 aa19.54■□□□□ 0.72
TOP3A-220ENST00000585031 LRRC15Q8TF66 581 aa19.54■□□□□ 0.72
TOP3A-220ENST00000585031 CNOT6LQ96LI5 555 aaKnown RBP19.54■□□□□ 0.72
TOP3A-220ENST00000585031 BBC3Q96PG8 261 aaPredicted RBP19.54■□□□□ 0.72
TOP3A-220ENST00000585031 MAGED2Q9UNF1 606 aaPredicted RBP19.54■□□□□ 0.72
TOP3A-220ENST00000585031 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa19.53■□□□□ 0.72
TOP3A-220ENST00000585031 CYB561D2O14569 222 aa19.53■□□□□ 0.72
TOP3A-220ENST00000585031 DDX6P26196 483 aaKnown RBP eCLIP19.53■□□□□ 0.72
TOP3A-220ENST00000585031 TOB1P50616 345 aaPredicted RBP19.53■□□□□ 0.72
TOP3A-220ENST00000585031 ZXDBP98169 803 aa19.53■□□□□ 0.72
TOP3A-220ENST00000585031 COL28A1Q2UY09 1125 aa19.53■□□□□ 0.72
TOP3A-220ENST00000585031 SLC39A4Q6P5W5 647 aa19.53■□□□□ 0.72
TOP3A-220ENST00000585031 RAB44Q7Z6P3 723 aaPredicted RBP19.53■□□□□ 0.72
TOP3A-220ENST00000585031 TMEFF1Q8IYR6 380 aa19.53■□□□□ 0.72
TOP3A-220ENST00000585031 SPPL2BQ8TCT7 592 aa19.53■□□□□ 0.72
TOP3A-220ENST00000585031 FAM212AQ96EL1 285 aa19.53■□□□□ 0.72
TOP3A-220ENST00000585031 RPF1Q9H9Y2 349 aaKnown RBP19.53■□□□□ 0.72
TOP3A-220ENST00000585031 APC2O95996 2303 aa19.53■□□□□ 0.72
TOP3A-220ENST00000585031 ATXN2Q99700 1313 aaKnown RBP19.52■□□□□ 0.72
TOP3A-220ENST00000585031 ACACAQ13085 2346 aa19.52■□□□□ 0.72
TOP3A-220ENST00000585031 RDXP35241 583 aaKnown RBP19.52■□□□□ 0.72
TOP3A-220ENST00000585031 SCAPQ12770 1279 aa19.52■□□□□ 0.72
TOP3A-220ENST00000585031 USP4Q13107 963 aa19.52■□□□□ 0.72
TOP3A-220ENST00000585031 SAFBQ15424 915 aaKnown RBP eCLIP19.52■□□□□ 0.72
TOP3A-220ENST00000585031 CCDC142Q17RM4 750 aa19.52■□□□□ 0.72
TOP3A-220ENST00000585031 SCARA3Q6AZY7 606 aa19.52■□□□□ 0.72
TOP3A-220ENST00000585031 EFCAB13Q8IY85 973 aa19.52■□□□□ 0.72
TOP3A-220ENST00000585031 MRPS31Q92665 395 aaKnown RBP19.52■□□□□ 0.72
TOP3A-220ENST00000585031 EXOC4Q96A65 974 aa19.52■□□□□ 0.72
TOP3A-220ENST00000585031 PNMA5Q96PV4 448 aa19.52■□□□□ 0.72
TOP3A-220ENST00000585031 PI4K2AQ9BTU6 479 aa19.52■□□□□ 0.72
TOP3A-220ENST00000585031 NUSAP1Q9BXS6 441 aaKnown RBP19.52■□□□□ 0.72
TOP3A-220ENST00000585031 CPSF3Q9UKF6 684 aaKnown RBP19.52■□□□□ 0.72
TOP3A-220ENST00000585031 MMP17Q9ULZ9 603 aa19.52■□□□□ 0.72
TOP3A-220ENST00000585031 TNFRSF10BO14763 440 aa19.51■□□□□ 0.71
TOP3A-220ENST00000585031 OGTO15294 1046 aa19.51■□□□□ 0.71
TOP3A-220ENST00000585031 P2RY2P41231 377 aa19.51■□□□□ 0.71
TOP3A-220ENST00000585031 NCKAP1LP55160 1127 aa19.51■□□□□ 0.71
TOP3A-220ENST00000585031 FAM160A1Q05DH4 1040 aa19.51■□□□□ 0.71
TOP3A-220ENST00000585031 ANKRD1Q15327 319 aa19.51■□□□□ 0.71
TOP3A-220ENST00000585031 CRY1Q16526 586 aa19.51■□□□□ 0.71
TOP3A-220ENST00000585031 DDR2Q16832 855 aa19.51■□□□□ 0.71
TOP3A-220ENST00000585031 ARSHQ5FYA8 562 aa19.51■□□□□ 0.71
TOP3A-220ENST00000585031 SLC23A3Q6PIS1 610 aa19.51■□□□□ 0.71
TOP3A-220ENST00000585031 TTC30AQ86WT1 665 aa19.51■□□□□ 0.71
TOP3A-220ENST00000585031 SYT12Q8IV01 421 aa19.51■□□□□ 0.71
TOP3A-220ENST00000585031 OR2I1PQ8NGU4 316 aa19.51■□□□□ 0.71
TOP3A-220ENST00000585031 C2orf15Q8WU43 125 aaKnown RBP19.51■□□□□ 0.71
TOP3A-220ENST00000585031 PYM1Q9BRP8 204 aaKnown RBP19.51■□□□□ 0.71
TOP3A-220ENST00000585031 TRPC7Q9HCX4 862 aa19.51■□□□□ 0.71
TOP3A-220ENST00000585031 GCNT4Q9P109 453 aa19.51■□□□□ 0.71
TOP3A-220ENST00000585031 PCDHB6Q9Y5E3 794 aa19.51■□□□□ 0.71
TOP3A-220ENST00000585031 A0A0B4J269 797 aa19.5■□□□□ 0.71
TOP3A-220ENST00000585031 C2orf78A6NCI8 922 aa19.5■□□□□ 0.71
TOP3A-220ENST00000585031 XPOTO43592 962 aaKnown RBP19.5■□□□□ 0.71
TOP3A-220ENST00000585031 IFNAR2P48551 515 aa19.5■□□□□ 0.71
TOP3A-220ENST00000585031 SMTNP53814 917 aa19.5■□□□□ 0.71
TOP3A-220ENST00000585031 ZNF423Q2M1K9 1284 aa19.5■□□□□ 0.71
TOP3A-220ENST00000585031 EMC10Q5UCC4 262 aa19.5■□□□□ 0.71
TOP3A-220ENST00000585031 ARL14EPQ8N8R7 260 aaPredicted RBP19.5■□□□□ 0.71
TOP3A-220ENST00000585031 ATP2A3Q93084 1043 aa19.5■□□□□ 0.71
TOP3A-220ENST00000585031 BICD1Q96G01 975 aa19.5■□□□□ 0.71
TOP3A-220ENST00000585031 PLIN2Q99541 437 aa19.5■□□□□ 0.71
TOP3A-220ENST00000585031 FOXP1Q9H334 677 aaPredicted RBP19.5■□□□□ 0.71
TOP3A-220ENST00000585031 ZDHHC4Q9NPG8 344 aa19.5■□□□□ 0.71
TOP3A-220ENST00000585031 PCDHB5Q9Y5E4 795 aa19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms