RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 TMC8Q8IU68 726 aa20.79■□□□□ 0.92
SS18-209ENST00000578595 SHKBP1Q8TBC3 707 aa20.79■□□□□ 0.92
SS18-209ENST00000578595 FGF14Q92915 247 aa20.79■□□□□ 0.92
SS18-209ENST00000578595 FUBP3Q96I24 572 aaKnown RBP eCLIP20.79■□□□□ 0.92
SS18-209ENST00000578595 PKMYT1Q99640 499 aa20.79■□□□□ 0.92
SS18-209ENST00000578595 SDCBP2Q9H190 292 aa20.79■□□□□ 0.92
SS18-209ENST00000578595 METTL14Q9HCE5 456 aaKnown RBP20.79■□□□□ 0.92
SS18-209ENST00000578595 ZNF334Q9HCZ1 680 aaPredicted RBP20.79■□□□□ 0.92
SS18-209ENST00000578595 C11orf16Q9NQ32 467 aa20.79■□□□□ 0.92
SS18-209ENST00000578595 GDE1Q9NZC3 331 aa20.79■□□□□ 0.92
SS18-209ENST00000578595 TRIOO75962 3097 aa20.79■□□□□ 0.92
SS18-209ENST00000578595 FGF19O95750 216 aa20.78■□□□□ 0.92
SS18-209ENST00000578595 CFHP08603 1231 aa20.78■□□□□ 0.92
SS18-209ENST00000578595 PTPN1P18031 435 aaKnown RBP20.78■□□□□ 0.92
SS18-209ENST00000578595 CD58P19256 250 aa20.78■□□□□ 0.92
SS18-209ENST00000578595 RFX1P22670 979 aa20.78■□□□□ 0.92
SS18-209ENST00000578595 GRIK1P39086 918 aa20.78■□□□□ 0.92
SS18-209ENST00000578595 ORC1Q13415 861 aa20.78■□□□□ 0.92
SS18-209ENST00000578595 TPD52L1Q16890 204 aaPredicted RBP20.78■□□□□ 0.92
SS18-209ENST00000578595 WDR44Q5JSH3 913 aa20.78■□□□□ 0.92
SS18-209ENST00000578595 ZC3H3Q8IXZ2 948 aaKnown RBP20.78■□□□□ 0.92
SS18-209ENST00000578595 B3GALNT2Q8NCR0 500 aa20.78■□□□□ 0.92
SS18-209ENST00000578595 FBXL13Q8NEE6 735 aa20.78■□□□□ 0.92
SS18-209ENST00000578595 MYCBPAPQ8TBZ2 947 aa20.78■□□□□ 0.92
SS18-209ENST00000578595 NXPE3Q969Y0 559 aa20.78■□□□□ 0.92
SS18-209ENST00000578595 PCED1BQ96HM7 432 aa20.78■□□□□ 0.92
SS18-209ENST00000578595 TNIP3Q96KP6 325 aa20.78■□□□□ 0.92
SS18-209ENST00000578595 DUSP9Q99956 384 aaKnown RBP20.78■□□□□ 0.92
SS18-209ENST00000578595 NIF3L1Q9GZT8 377 aa20.78■□□□□ 0.92
SS18-209ENST00000578595 MFSD1Q9H3U5 465 aa20.78■□□□□ 0.92
SS18-209ENST00000578595 DUSP12Q9UNI6 340 aa20.78■□□□□ 0.92
SS18-209ENST00000578595 NME7Q9Y5B8 376 aa20.78■□□□□ 0.92
SS18-209ENST00000578595 ATP8B3O60423 1300 aa20.78■□□□□ 0.92
SS18-209ENST00000578595 TICRRQ7Z2Z1 1910 aa20.77■□□□□ 0.92
SS18-209ENST00000578595 PRR33A8MZF0 331 aa20.77■□□□□ 0.92
SS18-209ENST00000578595 FAM163BP0C2L3 166 aa20.77■□□□□ 0.92
SS18-209ENST00000578595 CSH1P0DML2 217 aa20.77■□□□□ 0.92
SS18-209ENST00000578595 CSH2P0DML3 217 aa20.77■□□□□ 0.92
SS18-209ENST00000578595 CDC25CP30307 473 aa20.77■□□□□ 0.92
SS18-209ENST00000578595 ASPAP45381 313 aa20.77■□□□□ 0.92
SS18-209ENST00000578595 EPHA5P54756 1037 aa20.77■□□□□ 0.92
SS18-209ENST00000578595 CYP4F8P98187 520 aa20.77■□□□□ 0.92
SS18-209ENST00000578595 CFAP221Q4G0U5 840 aa20.77■□□□□ 0.92
SS18-209ENST00000578595 GPR158Q5T848 1215 aa20.77■□□□□ 0.92
SS18-209ENST00000578595 FAM171BQ6P995 826 aa20.77■□□□□ 0.92
SS18-209ENST00000578595 FILIP1Q7Z7B0 1213 aa20.77■□□□□ 0.92
SS18-209ENST00000578595 SLC44A3Q8N4M1 653 aa20.77■□□□□ 0.92
SS18-209ENST00000578595 PBXIP1Q96AQ6 731 aa20.77■□□□□ 0.92
SS18-209ENST00000578595 SLC38A8A6NNN8 435 aa20.76■□□□□ 0.91
SS18-209ENST00000578595 ANHXE9PGG2 379 aa20.76■□□□□ 0.91
SS18-209ENST00000578595 NRG2O14511 850 aaPredicted RBP20.76■□□□□ 0.91
SS18-209ENST00000578595 FGFR1OPO95684 399 aaKnown RBP20.76■□□□□ 0.91
SS18-209ENST00000578595 NDST1P52848 882 aa20.76■□□□□ 0.91
SS18-209ENST00000578595 CBWD6Q4V339 395 aa20.76■□□□□ 0.91
SS18-209ENST00000578595 CBWD3Q5JTY5 395 aa20.76■□□□□ 0.91
SS18-209ENST00000578595 FAM78AQ5JUQ0 283 aa20.76■□□□□ 0.91
SS18-209ENST00000578595 CBWD5Q5RIA9 395 aa20.76■□□□□ 0.91
SS18-209ENST00000578595 STXBP5Q5T5C0 1151 aa20.76■□□□□ 0.91
SS18-209ENST00000578595 HFE2Q6ZVN8 426 aa20.76■□□□□ 0.91
SS18-209ENST00000578595 FRMD5Q7Z6J6 570 aa20.76■□□□□ 0.91
SS18-209ENST00000578595 ACOT1Q86TX2 421 aa20.76■□□□□ 0.91
SS18-209ENST00000578595 SUGP1Q8IWZ8 645 aaKnown RBP20.76■□□□□ 0.91
SS18-209ENST00000578595 ZSCAN18Q8TBC5 510 aaPredicted RBP20.76■□□□□ 0.91
SS18-209ENST00000578595 RPP25Q9BUL9 199 aaKnown RBP20.76■□□□□ 0.91
SS18-209ENST00000578595 SRRTQ9BXP5 876 aaKnown RBP20.76■□□□□ 0.91
SS18-209ENST00000578595 DNAI2Q9GZS0 605 aa20.76■□□□□ 0.91
SS18-209ENST00000578595 APOBEC3GQ9HC16 384 aaKnown RBP20.76■□□□□ 0.91
SS18-209ENST00000578595 RAB20Q9NX57 234 aa20.76■□□□□ 0.91
SS18-209ENST00000578595 HELZP42694 1942 aaKnown RBP20.75■□□□□ 0.91
SS18-209ENST00000578595 MIA3Q5JRA6 1907 aa20.75■□□□□ 0.91
SS18-209ENST00000578595 TRIM66O15016 1216 aa20.75■□□□□ 0.91
SS18-209ENST00000578595 LRRN2O75325 713 aa20.75■□□□□ 0.91
SS18-209ENST00000578595 MICAL2O94851 1124 aa20.75■□□□□ 0.91
SS18-209ENST00000578595 SRFP11831 508 aa20.75■□□□□ 0.91
SS18-209ENST00000578595 MAGEA11P43364 429 aa20.75■□□□□ 0.91
SS18-209ENST00000578595 IFRD2Q12894 506 aaPredicted RBP20.75■□□□□ 0.91
SS18-209ENST00000578595 VSTM1Q6UX27 236 aa20.75■□□□□ 0.91
SS18-209ENST00000578595 GAREM2Q75VX8 874 aa20.75■□□□□ 0.91
SS18-209ENST00000578595 SEMA4DQ92854 862 aa20.75■□□□□ 0.91
SS18-209ENST00000578595 LRRC3Q9BY71 257 aa20.75■□□□□ 0.91
SS18-209ENST00000578595 ZNF518BQ9C0D4 1074 aa20.75■□□□□ 0.91
SS18-209ENST00000578595 ELOVL4Q9GZR5 314 aa20.75■□□□□ 0.91
SS18-209ENST00000578595 ZFP14Q9HCL3 533 aa20.75■□□□□ 0.91
SS18-209ENST00000578595 FAM49BQ9NUQ9 324 aa20.75■□□□□ 0.91
SS18-209ENST00000578595 HMGXB4Q9UGU5 601 aa20.75■□□□□ 0.91
SS18-209ENST00000578595 CA14Q9ULX7 337 aa20.75■□□□□ 0.91
SS18-209ENST00000578595 CLDN5O00501 218 aa20.74■□□□□ 0.91
SS18-209ENST00000578595 MOSPD3O75425 235 aa20.74■□□□□ 0.91
SS18-209ENST00000578595 GNA14O95837 355 aa20.74■□□□□ 0.91
SS18-209ENST00000578595 CCDC192P0DO97 292 aa20.74■□□□□ 0.91
SS18-209ENST00000578595 LRMPQ12912 555 aa20.74■□□□□ 0.91
SS18-209ENST00000578595 GPIHBP1Q8IV16 184 aa20.74■□□□□ 0.91
SS18-209ENST00000578595 MLKLQ8NB16 471 aa20.74■□□□□ 0.91
SS18-209ENST00000578595 SMARCD2Q92925 531 aa20.74■□□□□ 0.91
SS18-209ENST00000578595 SLC35C1Q96A29 364 aa20.74■□□□□ 0.91
SS18-209ENST00000578595 ZSWIM3Q96MP5 696 aa20.74■□□□□ 0.91
SS18-209ENST00000578595 ASB16Q96NS5 453 aa20.74■□□□□ 0.91
SS18-209ENST00000578595 GPR88Q9GZN0 384 aa20.74■□□□□ 0.91
SS18-209ENST00000578595 CYP3A43Q9HB55 503 aa20.74■□□□□ 0.91
SS18-209ENST00000578595 UXTQ9UBK9 157 aaPredicted RBP20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms