RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 GUF1Q8N442 669 aaKnown RBP3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 ZNF655Q8N720 491 aaPredicted RBP3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 GIMAP7Q8NHV1 300 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 SETD7Q8WTS6 366 aaKnown RBP3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 RAPGEF5Q92565 580 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 CXorf40BQ96DE9 158 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 LRRC46Q96FV0 321 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 PKNOX2Q96KN3 472 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 LRGUKQ96M69 825 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 ZFP42Q96MM3 310 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 NR1H4Q96RI1 486 aaPredicted RBP3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 THAP9Q9H5L6 903 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 VCX3AQ9NNX9 186 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 PARVAQ9NVD7 372 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 ZMYM5Q9UJ78 669 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 TSR3Q9UJK0 312 aaKnown RBP3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 SYNPO2Q9UMS6 1093 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 ZNF711Q9Y462 761 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 FHOD1Q9Y613 1164 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 CLIC4Q9Y696 253 aa3.07□□□□□ -1.92
SMCHD1-203ENST00000577880 LOC102724159A0A0B4J2E5 919 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 KRT87PA6NCN2 255 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 EFCAB8A8MWE9 144 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 PODXLO00592 558 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 PDXKO00764 312 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 RNF40O75150 1001 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 SMIM24O75264 130 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 ENDOD1O94919 500 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 MT-ND3P03897 115 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 FGFR1P11362 822 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 NMT1P30419 496 aaKnown RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 HPDP32754 393 aaPredicted RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 GUCY1A2P33402 732 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 PPP3CCP48454 512 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 CRYBB1P53674 252 aaPredicted RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 GPC5P78333 572 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 POU5F1BQ06416 359 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 SNX1Q13596 522 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 ACOX1Q15067 660 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 PWP2Q15269 919 aaKnown RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 SNRNP35Q16560 246 aaKnown RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 GOLGA7BQ2TAP0 167 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 KRT71Q3SY84 523 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 USP39Q53GS9 565 aaKnown RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 NAA35Q5VZE5 725 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 GRAMD4Q6IC98 578 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 ALKBH5Q6P6C2 394 aaKnown RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 CHRDL2Q6WN34 429 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 CLYBLQ8N0X4 340 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 CNPY4Q8N129 248 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 EXD1Q8NHP7 514 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 CALML6Q8TD86 181 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 USP33Q8TEY7 942 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 KRT35Q92764 455 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 TIFAQ96CG3 184 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 VMP1Q96GC9 406 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 MTMR9Q96QG7 549 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 PNKPQ96T60 521 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 SLC9A7Q96T83 725 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 TTPALQ9BTX7 342 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 RTFDC1Q9BY42 306 aaPredicted RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 VCX3BQ9H321 246 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 RPRD1BQ9NQG5 326 aaKnown RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 PCMTD2Q9NV79 361 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 SNTG2Q9NY99 539 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 IMPACTQ9P2X3 320 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 RSPH14Q9UHP6 348 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 ZNF510Q9Y2H8 683 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 ORC6Q9Y5N6 252 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 TLL2Q9Y6L7 1015 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 CNTNAP2Q9UHC6 1331 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 A0A088AWK7 358 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 CCDC160A6NGH7 325 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 OR6C75A6NL08 312 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 SUPT3HB4E1H0 165 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 C5orf58C9J3I9 102 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 ARVCFO00192 962 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 AGRPO00253 132 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 CACNB4O00305 520 aaPredicted RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 TEX33O43247 280 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 MGEA5O60502 916 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 SERPING1P05155 500 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 SLC2A4P14672 509 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 ZNF10P21506 573 aaPredicted RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 KCNA5P22460 613 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 KLRK1P26718 216 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 GABRR2P28476 465 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 HMOX2P30519 316 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 SCNN1GP51170 649 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 ARHGDIAP52565 204 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 ADKP55263 362 aaKnown RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 CDH8P55286 799 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 TBX4P57082 545 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 PSMC6P62333 389 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 EHHADHQ08426 723 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 KCNA1Q09470 495 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 LAMTOR4Q0VGL1 99 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 PDAP1Q13442 181 aaKnown RBP3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 PDK1Q15118 436 aa3.06□□□□□ -1.92
SMCHD1-203ENST00000577880 SLC39A12Q504Y0 691 aa3.06□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms