RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 LRMPQ12912 555 aa10.17□□□□□ -0.78
CCDC40-214ENST00000575431 IQCB1Q15051 598 aa10.17□□□□□ -0.78
CCDC40-214ENST00000575431 KRT31Q15323 416 aa10.17□□□□□ -0.78
CCDC40-214ENST00000575431 FILIP1LQ4L180 1135 aa10.17□□□□□ -0.78
CCDC40-214ENST00000575431 HSP90AA4PQ58FG1 418 aa10.17□□□□□ -0.78
CCDC40-214ENST00000575431 MDH1BQ5I0G3 518 aa10.17□□□□□ -0.78
CCDC40-214ENST00000575431 PDZD4Q76G19 769 aaPredicted RBP10.17□□□□□ -0.78
CCDC40-214ENST00000575431 DNAJB7Q7Z6W7 309 aaPredicted RBP10.17□□□□□ -0.78
CCDC40-214ENST00000575431 ACOT1Q86TX2 421 aa10.17□□□□□ -0.78
CCDC40-214ENST00000575431 DHX40Q8IX18 779 aaKnown RBP10.17□□□□□ -0.78
CCDC40-214ENST00000575431 FAM200AQ8TCP9 573 aa10.17□□□□□ -0.78
CCDC40-214ENST00000575431 PSMG2Q969U7 264 aa10.17□□□□□ -0.78
CCDC40-214ENST00000575431 MYLPFQ96A32 169 aa10.17□□□□□ -0.78
CCDC40-214ENST00000575431 SMARCD1Q96GM5 515 aa10.17□□□□□ -0.78
CCDC40-214ENST00000575431 TMEM176AQ96HP8 235 aa10.17□□□□□ -0.78
CCDC40-214ENST00000575431 SPATA17Q96L03 361 aa10.17□□□□□ -0.78
CCDC40-214ENST00000575431 C8orf48Q96LL4 319 aa10.17□□□□□ -0.78
CCDC40-214ENST00000575431 HNRNPABQ99729 332 aaKnown RBP10.17□□□□□ -0.78
CCDC40-214ENST00000575431 GPR88Q9GZN0 384 aa10.17□□□□□ -0.78
CCDC40-214ENST00000575431 CRISPLD1Q9H336 500 aa10.17□□□□□ -0.78
CCDC40-214ENST00000575431 POMKQ9H5K3 350 aa10.17□□□□□ -0.78
CCDC40-214ENST00000575431 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.17□□□□□ -0.78
CCDC40-214ENST00000575431 TMLHEQ9NVH6 421 aa10.17□□□□□ -0.78
CCDC40-214ENST00000575431 TAB2Q9NYJ8 693 aa10.17□□□□□ -0.78
CCDC40-214ENST00000575431 DNMT3BQ9UBC3 853 aaKnown RBP10.17□□□□□ -0.78
CCDC40-214ENST00000575431 APEX2Q9UBZ4 518 aa10.17□□□□□ -0.78
CCDC40-214ENST00000575431 ZMYM5Q9UJ78 669 aa10.17□□□□□ -0.78
CCDC40-214ENST00000575431 NME7Q9Y5B8 376 aa10.17□□□□□ -0.78
CCDC40-214ENST00000575431 TRANK1O15050 2925 aa10.16□□□□□ -0.78
CCDC40-214ENST00000575431 SOBPA7XYQ1 873 aa10.16□□□□□ -0.78
CCDC40-214ENST00000575431 HCRTO43612 131 aa10.16□□□□□ -0.78
CCDC40-214ENST00000575431 RHOP08100 348 aa10.16□□□□□ -0.78
CCDC40-214ENST00000575431 PAEPP09466 180 aa10.16□□□□□ -0.78
CCDC40-214ENST00000575431 SLC9A1P19634 815 aa10.16□□□□□ -0.78
CCDC40-214ENST00000575431 FSHRP23945 695 aa10.16□□□□□ -0.78
CCDC40-214ENST00000575431 CYP2F1P24903 491 aa10.16□□□□□ -0.78
CCDC40-214ENST00000575431 GRIK1P39086 918 aa10.16□□□□□ -0.78
CCDC40-214ENST00000575431 COPB1P53618 953 aaKnown RBP10.16□□□□□ -0.78
CCDC40-214ENST00000575431 RAD23BP54727 409 aa10.16□□□□□ -0.78
CCDC40-214ENST00000575431 EPHA5P54756 1037 aa10.16□□□□□ -0.78
CCDC40-214ENST00000575431 STILQ15468 1287 aa10.16□□□□□ -0.78
CCDC40-214ENST00000575431 PABPC1LQ4VXU2 614 aaKnown RBP10.16□□□□□ -0.78
CCDC40-214ENST00000575431 PHLDB3Q6NSJ2 640 aa10.16□□□□□ -0.78
CCDC40-214ENST00000575431 LRSAM1Q6UWE0 723 aa10.16□□□□□ -0.78
CCDC40-214ENST00000575431 GRASPQ7Z6J2 395 aaPredicted RBP10.16□□□□□ -0.78
CCDC40-214ENST00000575431 SCN4BQ8IWT1 228 aa10.16□□□□□ -0.78
CCDC40-214ENST00000575431 UBR7Q8N806 425 aa10.16□□□□□ -0.78
CCDC40-214ENST00000575431 WHAMMQ8TF30 809 aa10.16□□□□□ -0.78
CCDC40-214ENST00000575431 ELMO3Q96BJ8 720 aa10.16□□□□□ -0.78
CCDC40-214ENST00000575431 CYFIP2Q96F07 1278 aa10.16□□□□□ -0.78
CCDC40-214ENST00000575431 HEXIM2Q96MH2 286 aaKnown RBP10.16□□□□□ -0.78
CCDC40-214ENST00000575431 CRACR2AQ9BSW2 395 aa10.16□□□□□ -0.78
CCDC40-214ENST00000575431 ANP32EQ9BTT0 268 aa10.16□□□□□ -0.78
CCDC40-214ENST00000575431 MED10Q9BTT4 135 aa10.16□□□□□ -0.78
CCDC40-214ENST00000575431 B3GNT5Q9BYG0 378 aa10.16□□□□□ -0.78
CCDC40-214ENST00000575431 VPS16Q9H269 839 aa10.16□□□□□ -0.78
CCDC40-214ENST00000575431 DPEP3Q9H4B8 488 aa10.16□□□□□ -0.78
CCDC40-214ENST00000575431 UBE2TQ9NPD8 197 aaPredicted RBP10.16□□□□□ -0.78
CCDC40-214ENST00000575431 ASAH2Q9NR71 780 aa10.16□□□□□ -0.78
CCDC40-214ENST00000575431 CEP72Q9P209 647 aa10.16□□□□□ -0.78
CCDC40-214ENST00000575431 UXTQ9UBK9 157 aaPredicted RBP10.16□□□□□ -0.78
CCDC40-214ENST00000575431 CNTN6Q9UQ52 1028 aa10.16□□□□□ -0.78
CCDC40-214ENST00000575431 MRPS23Q9Y3D9 190 aaKnown RBP10.16□□□□□ -0.78
CCDC40-214ENST00000575431 SZT2Q5T011 3432 aa10.16□□□□□ -0.78
CCDC40-214ENST00000575431 LAMA2P24043 3122 aaKnown RBP10.16□□□□□ -0.78
CCDC40-214ENST00000575431 DENND4AQ7Z401 1863 aa10.15□□□□□ -0.78
CCDC40-214ENST00000575431 C19orf67A6NJJ6 358 aa10.15□□□□□ -0.78
CCDC40-214ENST00000575431 LGALS16A8MUM7 142 aa10.15□□□□□ -0.78
CCDC40-214ENST00000575431 NOL4O94818 638 aa10.15□□□□□ -0.78
CCDC40-214ENST00000575431 VDRP11473 427 aa10.15□□□□□ -0.78
CCDC40-214ENST00000575431 ATF6P18850 670 aa10.15□□□□□ -0.78
CCDC40-214ENST00000575431 BDNFP23560 247 aa10.15□□□□□ -0.78
CCDC40-214ENST00000575431 CDC25CP30307 473 aa10.15□□□□□ -0.78
CCDC40-214ENST00000575431 PPP3CCP48454 512 aa10.15□□□□□ -0.78
CCDC40-214ENST00000575431 SLC8A3P57103 927 aa10.15□□□□□ -0.78
CCDC40-214ENST00000575431 ZP2Q05996 745 aa10.15□□□□□ -0.78
CCDC40-214ENST00000575431 ZNF394Q53GI3 561 aa10.15□□□□□ -0.78
CCDC40-214ENST00000575431 ARHGAP17Q68EM7 881 aa10.15□□□□□ -0.78
CCDC40-214ENST00000575431 TMEM270Q6UE05 265 aa10.15□□□□□ -0.78
CCDC40-214ENST00000575431 DENND5BQ6ZUT9 1274 aa10.15□□□□□ -0.78
CCDC40-214ENST00000575431 RRAGAQ7L523 313 aa10.15□□□□□ -0.78
CCDC40-214ENST00000575431 FAM35AQ86V20 835 aa10.15□□□□□ -0.78
CCDC40-214ENST00000575431 ARHGEF19Q8IW93 802 aa10.15□□□□□ -0.78
CCDC40-214ENST00000575431 ZDHHC14Q8IZN3 488 aa10.15□□□□□ -0.78
CCDC40-214ENST00000575431 FUKQ8N0W3 1084 aa10.15□□□□□ -0.78
CCDC40-214ENST00000575431 TTC9BQ8N6N2 239 aa10.15□□□□□ -0.78
CCDC40-214ENST00000575431 TDRD5Q8NAT2 981 aaKnown RBP10.15□□□□□ -0.78
CCDC40-214ENST00000575431 SLC2A14Q8TDB8 520 aa10.15□□□□□ -0.78
CCDC40-214ENST00000575431 ADAMTS19Q8TE59 1207 aa10.15□□□□□ -0.78
CCDC40-214ENST00000575431 NXPE3Q969Y0 559 aa10.15□□□□□ -0.78
CCDC40-214ENST00000575431 TRMT2BQ96GJ1 504 aaKnown RBP10.15□□□□□ -0.78
CCDC40-214ENST00000575431 MYRFLQ96LU7 910 aa10.15□□□□□ -0.78
CCDC40-214ENST00000575431 TWNKQ96RR1 684 aa10.15□□□□□ -0.78
CCDC40-214ENST00000575431 ARID3AQ99856 593 aa10.15□□□□□ -0.78
CCDC40-214ENST00000575431 CORO1BQ9BR76 489 aa10.15□□□□□ -0.78
CCDC40-214ENST00000575431 HSD3B7Q9H2F3 369 aa10.15□□□□□ -0.78
CCDC40-214ENST00000575431 TSPY26PQ9H489 355 aa10.15□□□□□ -0.78
CCDC40-214ENST00000575431 CBX8Q9HC52 389 aa10.15□□□□□ -0.78
CCDC40-214ENST00000575431 CSNK1G1Q9HCP0 422 aa10.15□□□□□ -0.78
CCDC40-214ENST00000575431 PNPLA8Q9NP80 782 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms