RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 HOXA9P31269 272 aa19.32■□□□□ 0.68
CCDC40-213ENST00000574933 CLCN1P35523 988 aa19.32■□□□□ 0.68
CCDC40-213ENST00000574933 ZNF75DP51815 510 aa19.32■□□□□ 0.68
CCDC40-213ENST00000574933 SPECC1LQ69YQ0 1117 aa19.32■□□□□ 0.68
CCDC40-213ENST00000574933 ELMSAN1Q6PJG2 1045 aa19.32■□□□□ 0.68
CCDC40-213ENST00000574933 VSTM1Q6UX27 236 aa19.32■□□□□ 0.68
CCDC40-213ENST00000574933 CCDC149Q6ZUS6 474 aa19.32■□□□□ 0.68
CCDC40-213ENST00000574933 C12orf29Q8N999 325 aa19.32■□□□□ 0.68
CCDC40-213ENST00000574933 PABPC5Q96DU9 382 aaKnown RBP19.32■□□□□ 0.68
CCDC40-213ENST00000574933 CYFIP2Q96F07 1278 aa19.32■□□□□ 0.68
CCDC40-213ENST00000574933 HEXIM2Q96MH2 286 aaKnown RBP19.32■□□□□ 0.68
CCDC40-213ENST00000574933 PGLYRP2Q96PD5 576 aa19.32■□□□□ 0.68
CCDC40-213ENST00000574933 CRISPLD1Q9H336 500 aa19.32■□□□□ 0.68
CCDC40-213ENST00000574933 MAN1C1Q9NR34 630 aa19.32■□□□□ 0.68
CCDC40-213ENST00000574933 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP19.32■□□□□ 0.68
CCDC40-213ENST00000574933 REV3LO60673 3130 aa19.32■□□□□ 0.68
CCDC40-213ENST00000574933 ANAPC1Q9H1A4 1944 aa19.31■□□□□ 0.68
CCDC40-213ENST00000574933 OBSL1O75147 1896 aa19.31■□□□□ 0.68
CCDC40-213ENST00000574933 ZMYND10O75800 440 aa19.31■□□□□ 0.68
CCDC40-213ENST00000574933 SRGAP2BP0DMP2 458 aa19.31■□□□□ 0.68
CCDC40-213ENST00000574933 KRT5P13647 590 aa19.31■□□□□ 0.68
CCDC40-213ENST00000574933 ELF1P32519 619 aa19.31■□□□□ 0.68
CCDC40-213ENST00000574933 SOX5P35711 763 aa19.31■□□□□ 0.68
CCDC40-213ENST00000574933 TUFMP49411 452 aaKnown RBP19.31■□□□□ 0.68
CCDC40-213ENST00000574933 BPIFB4P59827 614 aa19.31■□□□□ 0.68
CCDC40-213ENST00000574933 PLCB2Q00722 1185 aa19.31■□□□□ 0.68
CCDC40-213ENST00000574933 DUSP4Q13115 394 aa19.31■□□□□ 0.68
CCDC40-213ENST00000574933 STILQ15468 1287 aa19.31■□□□□ 0.68
CCDC40-213ENST00000574933 MEA1Q16626 185 aa19.31■□□□□ 0.68
CCDC40-213ENST00000574933 SGO2Q562F6 1265 aa19.31■□□□□ 0.68
CCDC40-213ENST00000574933 SPATA2LQ8IUW3 424 aaPredicted RBP19.31■□□□□ 0.68
CCDC40-213ENST00000574933 CMASQ8NFW8 434 aaPredicted RBP19.31■□□□□ 0.68
CCDC40-213ENST00000574933 CEP295NLQ96MC4 621 aa19.31■□□□□ 0.68
CCDC40-213ENST00000574933 SPAG5Q96R06 1193 aa19.31■□□□□ 0.68
CCDC40-213ENST00000574933 RHOBTB2Q9BYZ6 727 aa19.31■□□□□ 0.68
CCDC40-213ENST00000574933 IGFLR1Q9H665 355 aa19.31■□□□□ 0.68
CCDC40-213ENST00000574933 ATP8B3O60423 1300 aa19.3■□□□□ 0.68
CCDC40-213ENST00000574933 LINC01565O15544 149 aa19.3■□□□□ 0.68
CCDC40-213ENST00000574933 HNRNPA1P09651 372 aaKnown RBP eCLIP19.3■□□□□ 0.68
CCDC40-213ENST00000574933 SPATA31D3P0C874 917 aa19.3■□□□□ 0.68
CCDC40-213ENST00000574933 STAT1P42224 750 aa19.3■□□□□ 0.68
CCDC40-213ENST00000574933 RBM10P98175 930 aaKnown RBP19.3■□□□□ 0.68
CCDC40-213ENST00000574933 TRIM14Q14142 442 aa19.3■□□□□ 0.68
CCDC40-213ENST00000574933 CNGA2Q16280 664 aa19.3■□□□□ 0.68
CCDC40-213ENST00000574933 PPP1R26Q5T8A7 1209 aaPredicted RBP19.3■□□□□ 0.68
CCDC40-213ENST00000574933 LIN9Q5TKA1 542 aa19.3■□□□□ 0.68
CCDC40-213ENST00000574933 SPATA31D4Q6ZUB0 917 aa19.3■□□□□ 0.68
CCDC40-213ENST00000574933 CACNA2D4Q7Z3S7 1137 aa19.3■□□□□ 0.68
CCDC40-213ENST00000574933 FAM35AQ86V20 835 aa19.3■□□□□ 0.68
CCDC40-213ENST00000574933 FMNL3Q8IVF7 1028 aa19.3■□□□□ 0.68
CCDC40-213ENST00000574933 SLC2A14Q8TDB8 520 aa19.3■□□□□ 0.68
CCDC40-213ENST00000574933 TFAP2BQ92481 460 aa19.3■□□□□ 0.68
CCDC40-213ENST00000574933 ZSWIM1Q9BR11 485 aa19.3■□□□□ 0.68
CCDC40-213ENST00000574933 CYP4F11Q9HBI6 524 aa19.3■□□□□ 0.68
CCDC40-213ENST00000574933 FAM49BQ9NUQ9 324 aa19.3■□□□□ 0.68
CCDC40-213ENST00000574933 ZDHHC7Q9NXF8 308 aa19.3■□□□□ 0.68
CCDC40-213ENST00000574933 ABI2Q9NYB9 513 aaPredicted RBP19.3■□□□□ 0.68
CCDC40-213ENST00000574933 CAPN11Q9UMQ6 739 aa19.3■□□□□ 0.68
CCDC40-213ENST00000574933 INSL5Q9Y5Q6 135 aa19.3■□□□□ 0.68
CCDC40-213ENST00000574933 DOCK8Q8NF50 2099 aa19.29■□□□□ 0.68
CCDC40-213ENST00000574933 DENND4AQ7Z401 1863 aa19.29■□□□□ 0.68
CCDC40-213ENST00000574933 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP19.29■□□□□ 0.68
CCDC40-213ENST00000574933 O00370 1275 aa19.29■□□□□ 0.68
CCDC40-213ENST00000574933 CYP26A1O43174 497 aa19.29■□□□□ 0.68
CCDC40-213ENST00000574933 GYPCP04921 128 aa19.29■□□□□ 0.68
CCDC40-213ENST00000574933 C8AP07357 584 aa19.29■□□□□ 0.68
CCDC40-213ENST00000574933 PNMA6AP0CW24 399 aaPredicted RBP19.29■□□□□ 0.68
CCDC40-213ENST00000574933 CCDC130P13994 396 aa19.29■□□□□ 0.68
CCDC40-213ENST00000574933 HOXB8P17481 243 aaPredicted RBP19.29■□□□□ 0.68
CCDC40-213ENST00000574933 CYP2F1P24903 491 aa19.29■□□□□ 0.68
CCDC40-213ENST00000574933 LTBRP36941 435 aa19.29■□□□□ 0.68
CCDC40-213ENST00000574933 USP8P40818 1118 aa19.29■□□□□ 0.68
CCDC40-213ENST00000574933 CYP27A1Q02318 531 aa19.29■□□□□ 0.68
CCDC40-213ENST00000574933 PTK2Q05397 1052 aa19.29■□□□□ 0.68
CCDC40-213ENST00000574933 ANKRD54Q6NXT1 300 aa19.29■□□□□ 0.68
CCDC40-213ENST00000574933 LLGL2Q6P1M3 1020 aa19.29■□□□□ 0.68
CCDC40-213ENST00000574933 LCLAT1Q6UWP7 414 aa19.29■□□□□ 0.68
CCDC40-213ENST00000574933 MICALL1Q8N3F8 863 aa19.29■□□□□ 0.68
CCDC40-213ENST00000574933 TTC9BQ8N6N2 239 aa19.29■□□□□ 0.68
CCDC40-213ENST00000574933 ZNF606Q8WXB4 792 aa19.29■□□□□ 0.68
CCDC40-213ENST00000574933 SMARCD1Q96GM5 515 aa19.29■□□□□ 0.68
CCDC40-213ENST00000574933 ZNF518BQ9C0D4 1074 aa19.29■□□□□ 0.68
CCDC40-213ENST00000574933 CSNK1G1Q9HCP0 422 aa19.29■□□□□ 0.68
CCDC40-213ENST00000574933 CLEC1BQ9P126 229 aa19.29■□□□□ 0.68
CCDC40-213ENST00000574933 YIPF1Q9Y548 306 aa19.29■□□□□ 0.68
CCDC40-213ENST00000574933 MYO16Q9Y6X6 1858 aa19.28■□□□□ 0.68
CCDC40-213ENST00000574933 CLDN5O00501 218 aa19.28■□□□□ 0.68
CCDC40-213ENST00000574933 PRRG1O14668 218 aa19.28■□□□□ 0.68
CCDC40-213ENST00000574933 TBX10O75333 385 aa19.28■□□□□ 0.68
CCDC40-213ENST00000574933 CD19P15391 556 aa19.28■□□□□ 0.68
CCDC40-213ENST00000574933 BDNFP23560 247 aa19.28■□□□□ 0.68
CCDC40-213ENST00000574933 GNA15P30679 374 aa19.28■□□□□ 0.68
CCDC40-213ENST00000574933 ZBED6P86452 979 aa19.28■□□□□ 0.68
CCDC40-213ENST00000574933 TBX2Q13207 712 aaPredicted RBP19.28■□□□□ 0.68
CCDC40-213ENST00000574933 PLD1Q13393 1074 aa19.28■□□□□ 0.68
CCDC40-213ENST00000574933 PKDCCQ504Y2 493 aa19.28■□□□□ 0.68
CCDC40-213ENST00000574933 SYCE2Q6PIF2 218 aa19.28■□□□□ 0.68
CCDC40-213ENST00000574933 CYP26C1Q6V0L0 522 aa19.28■□□□□ 0.68
CCDC40-213ENST00000574933 ANKRD52Q8NB46 1076 aa19.28■□□□□ 0.68
CCDC40-213ENST00000574933 SLC7A14Q8TBB6 771 aa19.28■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms