RNA–Protein interactions for RNA: ENST00000574003.1

RPAIN-214, Transcript of RPA interacting protein, humanhuman

TSL 4 BASIC

Gene RPAIN, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-214ENST00000574003 PIAS3Q9Y6X2 628 aa12.13□□□□□ -0.47
RPAIN-214ENST00000574003 GVINP1Q7Z2Y8 2422 aa12.12□□□□□ -0.47
RPAIN-214ENST00000574003 PATJQ8NI35 1801 aa12.12□□□□□ -0.47
RPAIN-214ENST00000574003 FAM237AA0A1B0GTK4 181 aa12.12□□□□□ -0.47
RPAIN-214ENST00000574003 DPYSL4O14531 572 aa12.12□□□□□ -0.47
RPAIN-214ENST00000574003 RPN1P04843 607 aaKnown RBP12.12□□□□□ -0.47
RPAIN-214ENST00000574003 WARSP23381 471 aaKnown RBP12.12□□□□□ -0.47
RPAIN-214ENST00000574003 BDNFP23560 247 aa12.12□□□□□ -0.47
RPAIN-214ENST00000574003 CCNE1P24864 410 aa12.12□□□□□ -0.47
RPAIN-214ENST00000574003 CDC25CP30307 473 aa12.12□□□□□ -0.47
RPAIN-214ENST00000574003 HOXC13P31276 330 aa12.12□□□□□ -0.47
RPAIN-214ENST00000574003 LHX1P48742 406 aa12.12□□□□□ -0.47
RPAIN-214ENST00000574003 CDH8P55286 799 aa12.12□□□□□ -0.47
RPAIN-214ENST00000574003 SMARCB1Q12824 385 aa12.12□□□□□ -0.47
RPAIN-214ENST00000574003 BIRC3Q13489 604 aa12.12□□□□□ -0.47
RPAIN-214ENST00000574003 WDR72Q3MJ13 1102 aa12.12□□□□□ -0.47
RPAIN-214ENST00000574003 MDH1BQ5I0G3 518 aa12.12□□□□□ -0.47
RPAIN-214ENST00000574003 TDRD10Q5VZ19 366 aaKnown RBP12.12□□□□□ -0.47
RPAIN-214ENST00000574003 TXNDC11Q6PKC3 985 aa12.12□□□□□ -0.47
RPAIN-214ENST00000574003 SCARA5Q6ZMJ2 495 aa12.12□□□□□ -0.47
RPAIN-214ENST00000574003 ZNF852Q6ZMS4 543 aa12.12□□□□□ -0.47
RPAIN-214ENST00000574003 TTC16Q8NEE8 873 aa12.12□□□□□ -0.47
RPAIN-214ENST00000574003 OR6B3Q8NGW1 331 aa12.12□□□□□ -0.47
RPAIN-214ENST00000574003 FAM3CQ92520 227 aa12.12□□□□□ -0.47
RPAIN-214ENST00000574003 IRF7Q92985 503 aa12.12□□□□□ -0.47
RPAIN-214ENST00000574003 GCNAQ96QF7 691 aa12.12□□□□□ -0.47
RPAIN-214ENST00000574003 SLC22A12Q96S37 553 aa12.12□□□□□ -0.47
RPAIN-214ENST00000574003 BCO2Q9BYV7 579 aa12.12□□□□□ -0.47
RPAIN-214ENST00000574003 GPR88Q9GZN0 384 aa12.12□□□□□ -0.47
RPAIN-214ENST00000574003 XYLT2Q9H1B5 865 aa12.12□□□□□ -0.47
RPAIN-214ENST00000574003 SMYD3Q9H7B4 428 aa12.12□□□□□ -0.47
RPAIN-214ENST00000574003 RBM12Q9NTZ6 932 aaKnown RBP12.12□□□□□ -0.47
RPAIN-214ENST00000574003 DMAC2Q9NW81 257 aa12.12□□□□□ -0.47
RPAIN-214ENST00000574003 NXF1Q9UBU9 619 aaKnown RBP12.12□□□□□ -0.47
RPAIN-214ENST00000574003 PTPRDP23468 1912 aa12.11□□□□□ -0.47
RPAIN-214ENST00000574003 GREB1Q4ZG55 1949 aa12.11□□□□□ -0.47
RPAIN-214ENST00000574003 ANAPC1Q9H1A4 1944 aa12.11□□□□□ -0.47
RPAIN-214ENST00000574003 CLDN5O00501 218 aa12.11□□□□□ -0.47
RPAIN-214ENST00000574003 PHACTR2O75167 634 aa12.11□□□□□ -0.47
RPAIN-214ENST00000574003 CLSTN1O94985 981 aa12.11□□□□□ -0.47
RPAIN-214ENST00000574003 VNN1O95497 513 aa12.11□□□□□ -0.47
RPAIN-214ENST00000574003 NR3C1P04150 777 aa12.11□□□□□ -0.47
RPAIN-214ENST00000574003 PCSK1P29120 753 aa12.11□□□□□ -0.47
RPAIN-214ENST00000574003 GNL1P36915 607 aaPredicted RBP12.11□□□□□ -0.47
RPAIN-214ENST00000574003 KPNA1P52294 538 aaPredicted RBP12.11□□□□□ -0.47
RPAIN-214ENST00000574003 CACNA2D1P54289 1103 aa12.11□□□□□ -0.47
RPAIN-214ENST00000574003 USP46P62068 366 aa12.11□□□□□ -0.47
RPAIN-214ENST00000574003 SNRPFP62306 86 aaKnown RBP12.11□□□□□ -0.47
RPAIN-214ENST00000574003 CYP27A1Q02318 531 aa12.11□□□□□ -0.47
RPAIN-214ENST00000574003 CSTF1Q05048 431 aaKnown RBP12.11□□□□□ -0.47
RPAIN-214ENST00000574003 FCHO2Q0JRZ9 810 aa12.11□□□□□ -0.47
RPAIN-214ENST00000574003 DPYDQ12882 1025 aa12.11□□□□□ -0.47
RPAIN-214ENST00000574003 MTAPQ13126 283 aa12.11□□□□□ -0.47
RPAIN-214ENST00000574003 ORC1Q13415 861 aa12.11□□□□□ -0.47
RPAIN-214ENST00000574003 TRPC3Q13507 836 aa12.11□□□□□ -0.47
RPAIN-214ENST00000574003 CEP135Q66GS9 1140 aa12.11□□□□□ -0.47
RPAIN-214ENST00000574003 TRIM68Q6AZZ1 485 aa12.11□□□□□ -0.47
RPAIN-214ENST00000574003 KRBA2Q6ZNG9 492 aa12.11□□□□□ -0.47
RPAIN-214ENST00000574003 SMYD4Q8IYR2 804 aaPredicted RBP12.11□□□□□ -0.47
RPAIN-214ENST00000574003 CMTM8Q8IZV2 173 aa12.11□□□□□ -0.47
RPAIN-214ENST00000574003 PARD3BQ8TEW8 1205 aa12.11□□□□□ -0.47
RPAIN-214ENST00000574003 USP13Q92995 863 aaPredicted RBP12.11□□□□□ -0.47
RPAIN-214ENST00000574003 NKD2Q969F2 451 aaPredicted RBP12.11□□□□□ -0.47
RPAIN-214ENST00000574003 CLDN23Q96B33 292 aa12.11□□□□□ -0.47
RPAIN-214ENST00000574003 PCED1BQ96HM7 432 aa12.11□□□□□ -0.47
RPAIN-214ENST00000574003 CYP2S1Q96SQ9 504 aa12.11□□□□□ -0.47
RPAIN-214ENST00000574003 SDCBP2Q9H190 292 aa12.11□□□□□ -0.47
RPAIN-214ENST00000574003 LMAN1LQ9HAT1 526 aa12.11□□□□□ -0.47
RPAIN-214ENST00000574003 TRPC7Q9HCX4 862 aa12.11□□□□□ -0.47
RPAIN-214ENST00000574003 TMEM30AQ9NV96 361 aa12.11□□□□□ -0.47
RPAIN-214ENST00000574003 MAGEC2Q9UBF1 373 aaPredicted RBP12.11□□□□□ -0.47
RPAIN-214ENST00000574003 USP25Q9UHP3 1055 aa12.11□□□□□ -0.47
RPAIN-214ENST00000574003 CDH9Q9ULB4 789 aa12.11□□□□□ -0.47
RPAIN-214ENST00000574003 FANCMQ8IYD8 2048 aa12.11□□□□□ -0.47
RPAIN-214ENST00000574003 CFAP54Q96N23 3096 aa12.11□□□□□ -0.47
RPAIN-214ENST00000574003 OTOGLQ3ZCN5 2332 aa12.1□□□□□ -0.47
RPAIN-214ENST00000574003 OTOL1A6NHN0 477 aaPredicted RBP12.1□□□□□ -0.47
RPAIN-214ENST00000574003 CHADO15335 359 aa12.1□□□□□ -0.47
RPAIN-214ENST00000574003 LAMTOR5O43504 91 aa12.1□□□□□ -0.47
RPAIN-214ENST00000574003 NOL4O94818 638 aa12.1□□□□□ -0.47
RPAIN-214ENST00000574003 ZNF202O95125 648 aa12.1□□□□□ -0.47
RPAIN-214ENST00000574003 FGF19O95750 216 aa12.1□□□□□ -0.47
RPAIN-214ENST00000574003 C4BPAP04003 597 aaKnown RBP12.1□□□□□ -0.47
RPAIN-214ENST00000574003 CSH1P0DML2 217 aa12.1□□□□□ -0.47
RPAIN-214ENST00000574003 CSH2P0DML3 217 aa12.1□□□□□ -0.47
RPAIN-214ENST00000574003 GRIK1P39086 918 aa12.1□□□□□ -0.47
RPAIN-214ENST00000574003 RPL10AP62906 217 aaKnown RBP12.1□□□□□ -0.47
RPAIN-214ENST00000574003 TNNC1P63316 161 aa12.1□□□□□ -0.47
RPAIN-214ENST00000574003 PSMD2Q13200 908 aa12.1□□□□□ -0.47
RPAIN-214ENST00000574003 GAS6Q14393 721 aa12.1□□□□□ -0.47
RPAIN-214ENST00000574003 C1orf220Q5T0J3 134 aa12.1□□□□□ -0.47
RPAIN-214ENST00000574003 NAIF1Q69YI7 327 aaPredicted RBP12.1□□□□□ -0.47
RPAIN-214ENST00000574003 SPOPLQ6IQ16 392 aa12.1□□□□□ -0.47
RPAIN-214ENST00000574003 DPH6Q7L8W6 267 aa12.1□□□□□ -0.47
RPAIN-214ENST00000574003 BPIFB1Q8TDL5 484 aa12.1□□□□□ -0.47
RPAIN-214ENST00000574003 CSGALNACT1Q8TDX6 532 aa12.1□□□□□ -0.47
RPAIN-214ENST00000574003 ERCC4Q92889 916 aaPredicted RBP12.1□□□□□ -0.47
RPAIN-214ENST00000574003 E2F7Q96AV8 911 aa12.1□□□□□ -0.47
RPAIN-214ENST00000574003 OSBPL6Q9BZF3 934 aa12.1□□□□□ -0.47
RPAIN-214ENST00000574003 ZNF518BQ9C0D4 1074 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms