RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 EPHB4P54760 987 aa14.48□□□□□ -0.09
CCDC40-209ENST00000573474 SNX16P57768 344 aa14.48□□□□□ -0.09
CCDC40-209ENST00000573474 TSPY1Q01534 308 aa14.48□□□□□ -0.09
CCDC40-209ENST00000573474 PLCB3Q01970 1234 aa14.48□□□□□ -0.09
CCDC40-209ENST00000573474 BST2Q10589 180 aaKnown RBP14.48□□□□□ -0.09
CCDC40-209ENST00000573474 MAPRE1Q15691 268 aaKnown RBP14.48□□□□□ -0.09
CCDC40-209ENST00000573474 MDH1BQ5I0G3 518 aa14.48□□□□□ -0.09
CCDC40-209ENST00000573474 INTS6LQ5JSJ4 861 aaKnown RBP14.48□□□□□ -0.09
CCDC40-209ENST00000573474 SPOUT1Q5T280 376 aaKnown RBP14.48□□□□□ -0.09
CCDC40-209ENST00000573474 FAM171A1Q5VUB5 890 aa14.48□□□□□ -0.09
CCDC40-209ENST00000573474 FUT10Q6P4F1 479 aa14.48□□□□□ -0.09
CCDC40-209ENST00000573474 FAM171BQ6P995 826 aa14.48□□□□□ -0.09
CCDC40-209ENST00000573474 TMCO2Q7Z6W1 182 aaPredicted RBP14.48□□□□□ -0.09
CCDC40-209ENST00000573474 TTC30AQ86WT1 665 aa14.48□□□□□ -0.09
CCDC40-209ENST00000573474 TPCN2Q8NHX9 752 aa14.48□□□□□ -0.09
CCDC40-209ENST00000573474 MYCBPAPQ8TBZ2 947 aa14.48□□□□□ -0.09
CCDC40-209ENST00000573474 STK32AQ8WU08 396 aa14.48□□□□□ -0.09
CCDC40-209ENST00000573474 DPF3Q92784 378 aa14.48□□□□□ -0.09
CCDC40-209ENST00000573474 ZNF558Q96NG5 402 aa14.48□□□□□ -0.09
CCDC40-209ENST00000573474 YME1L1Q96TA2 773 aa14.48□□□□□ -0.09
CCDC40-209ENST00000573474 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.48□□□□□ -0.09
CCDC40-209ENST00000573474 MED10Q9BTT4 135 aa14.48□□□□□ -0.09
CCDC40-209ENST00000573474 NUP85Q9BW27 656 aa14.48□□□□□ -0.09
CCDC40-209ENST00000573474 B3GNT5Q9BYG0 378 aa14.48□□□□□ -0.09
CCDC40-209ENST00000573474 GPR62Q9BZJ7 368 aa14.48□□□□□ -0.09
CCDC40-209ENST00000573474 MIS12Q9H081 205 aa14.48□□□□□ -0.09
CCDC40-209ENST00000573474 STRIP2Q9ULQ0 834 aa14.48□□□□□ -0.09
CCDC40-209ENST00000573474 ZMYND8Q9ULU4 1186 aaPredicted RBP14.48□□□□□ -0.09
CCDC40-209ENST00000573474 PCDHGC5Q9Y5F6 944 aa14.48□□□□□ -0.09
CCDC40-209ENST00000573474 CAPN6Q9Y6Q1 641 aa14.48□□□□□ -0.09
CCDC40-209ENST00000573474 MYBPHLA2RUH7 354 aa14.47□□□□□ -0.09
CCDC40-209ENST00000573474 CTAGE9A4FU28 777 aa14.47□□□□□ -0.09
CCDC40-209ENST00000573474 ATMINO43313 823 aaPredicted RBP14.47□□□□□ -0.09
CCDC40-209ENST00000573474 PALMO75781 387 aa14.47□□□□□ -0.09
CCDC40-209ENST00000573474 LAG3P18627 525 aa14.47□□□□□ -0.09
CCDC40-209ENST00000573474 RRM1P23921 792 aa14.47□□□□□ -0.09
CCDC40-209ENST00000573474 PBX3P40426 434 aa14.47□□□□□ -0.09
CCDC40-209ENST00000573474 GABRB2P47870 512 aa14.47□□□□□ -0.09
CCDC40-209ENST00000573474 SLC8A3P57103 927 aa14.47□□□□□ -0.09
CCDC40-209ENST00000573474 PDCLQ13371 301 aa14.47□□□□□ -0.09
CCDC40-209ENST00000573474 MRPL58Q14197 206 aaKnown RBP14.47□□□□□ -0.09
CCDC40-209ENST00000573474 ZNF268Q14587 947 aaPredicted RBP14.47□□□□□ -0.09
CCDC40-209ENST00000573474 PTPN20Q4JDL3 420 aa14.47□□□□□ -0.09
CCDC40-209ENST00000573474 COL13A1Q5TAT6 717 aaPredicted RBP14.47□□□□□ -0.09
CCDC40-209ENST00000573474 PLEKHA7Q6IQ23 1121 aa14.47□□□□□ -0.09
CCDC40-209ENST00000573474 KCNT2Q6UVM3 1135 aa14.47□□□□□ -0.09
CCDC40-209ENST00000573474 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.47□□□□□ -0.09
CCDC40-209ENST00000573474 FUKQ8N0W3 1084 aa14.47□□□□□ -0.09
CCDC40-209ENST00000573474 ZNF564Q8TBZ8 553 aaPredicted RBP14.47□□□□□ -0.09
CCDC40-209ENST00000573474 PHOSPHO2Q8TCD6 241 aa14.47□□□□□ -0.09
CCDC40-209ENST00000573474 SLC35F5Q8WV83 523 aa14.47□□□□□ -0.09
CCDC40-209ENST00000573474 C18orf8Q96DM3 657 aa14.47□□□□□ -0.09
CCDC40-209ENST00000573474 IGSF21Q96ID5 467 aa14.47□□□□□ -0.09
CCDC40-209ENST00000573474 NAPGQ99747 312 aaPredicted RBP14.47□□□□□ -0.09
CCDC40-209ENST00000573474 DUSP16Q9BY84 665 aa14.47□□□□□ -0.09
CCDC40-209ENST00000573474 MTIF3Q9H2K0 278 aaKnown RBP14.47□□□□□ -0.09
CCDC40-209ENST00000573474 SYNCQ9H7C4 482 aa14.47□□□□□ -0.09
CCDC40-209ENST00000573474 MRPL47Q9HD33 250 aaKnown RBP14.47□□□□□ -0.09
CCDC40-209ENST00000573474 OSGEPQ9NPF4 335 aa14.47□□□□□ -0.09
CCDC40-209ENST00000573474 PARVAQ9NVD7 372 aa14.47□□□□□ -0.09
CCDC40-209ENST00000573474 WDR35Q9P2L0 1181 aa14.47□□□□□ -0.09
CCDC40-209ENST00000573474 COG5Q9UP83 839 aa14.47□□□□□ -0.09
CCDC40-209ENST00000573474 SCINQ9Y6U3 715 aa14.47□□□□□ -0.09
CCDC40-209ENST00000573474 COL4A6Q14031 1691 aa14.46□□□□□ -0.09
CCDC40-209ENST00000573474 GRID2IPA4D2P6 1211 aa14.46□□□□□ -0.09
CCDC40-209ENST00000573474 CCDC85CA6NKD9 419 aa14.46□□□□□ -0.09
CCDC40-209ENST00000573474 H7C4K7 107 aa14.46□□□□□ -0.09
CCDC40-209ENST00000573474 GJB5O95377 273 aa14.46□□□□□ -0.09
CCDC40-209ENST00000573474 HTRA4P83105 476 aaPredicted RBP14.46□□□□□ -0.09
CCDC40-209ENST00000573474 PDE4CQ08493 712 aa14.46□□□□□ -0.09
CCDC40-209ENST00000573474 MAMLD1Q13495 774 aa14.46□□□□□ -0.09
CCDC40-209ENST00000573474 C2CD6Q53TS8 623 aa14.46□□□□□ -0.09
CCDC40-209ENST00000573474 VARS2Q5ST30 1063 aaKnown RBP14.46□□□□□ -0.09
CCDC40-209ENST00000573474 PAQR9Q6ZVX9 377 aa14.46□□□□□ -0.09
CCDC40-209ENST00000573474 PHLDB2Q86SQ0 1253 aa14.46□□□□□ -0.09
CCDC40-209ENST00000573474 CEP57Q86XR8 500 aa14.46□□□□□ -0.09
CCDC40-209ENST00000573474 DCP1BQ8IZD4 617 aaKnown RBP14.46□□□□□ -0.09
CCDC40-209ENST00000573474 SYCE1Q8N0S2 351 aa14.46□□□□□ -0.09
CCDC40-209ENST00000573474 LRRC57Q8N9N7 239 aa14.46□□□□□ -0.09
CCDC40-209ENST00000573474 OR10T2Q8NGX3 314 aa14.46□□□□□ -0.09
CCDC40-209ENST00000573474 IPO4Q8TEX9 1081 aaKnown RBP14.46□□□□□ -0.09
CCDC40-209ENST00000573474 BCL7CQ8WUZ0 217 aaPredicted RBP14.46□□□□□ -0.09
CCDC40-209ENST00000573474 CPXM1Q96SM3 734 aa14.46□□□□□ -0.09
CCDC40-209ENST00000573474 SLC9A7Q96T83 725 aa14.46□□□□□ -0.09
CCDC40-209ENST00000573474 PKMYT1Q99640 499 aa14.46□□□□□ -0.09
CCDC40-209ENST00000573474 ZBED2Q9BTP6 218 aa14.46□□□□□ -0.09
CCDC40-209ENST00000573474 SLC4A5Q9BY07 1137 aa14.46□□□□□ -0.09
CCDC40-209ENST00000573474 OXCT2Q9BYC2 517 aaPredicted RBP14.46□□□□□ -0.09
CCDC40-209ENST00000573474 CYLDQ9NQC7 956 aa14.46□□□□□ -0.09
CCDC40-209ENST00000573474 CXXC1Q9P0U4 656 aaPredicted RBP14.46□□□□□ -0.09
CCDC40-209ENST00000573474 JRKLQ9Y4A0 524 aa14.46□□□□□ -0.09
CCDC40-209ENST00000573474 INSL6Q9Y581 213 aa14.46□□□□□ -0.09
CCDC40-209ENST00000573474 MRPL42Q9Y6G3 142 aaKnown RBP14.46□□□□□ -0.09
CCDC40-209ENST00000573474 SLC4A7Q9Y6M7 1214 aa14.46□□□□□ -0.09
CCDC40-209ENST00000573474 OR6C75A6NL08 312 aa14.45□□□□□ -0.1
CCDC40-209ENST00000573474 CLDN5O00501 218 aa14.45□□□□□ -0.1
CCDC40-209ENST00000573474 XPO1O14980 1071 aaKnown RBP14.45□□□□□ -0.1
CCDC40-209ENST00000573474 FANCGO15287 622 aa14.45□□□□□ -0.1
CCDC40-209ENST00000573474 EFEMP2O95967 443 aa14.45□□□□□ -0.1
CCDC40-209ENST00000573474 ERBB2P04626 1255 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms