RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 ASPAP45381 313 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 IREB2P48200 963 aaKnown RBP9.22□□□□□ -0.93
LINC00558-201ENST00000569422 RAB6CQ53S08 254 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 SH3PXD2AQ5TCZ1 1133 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 JADE1Q6IE81 842 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 C16orf87Q6PH81 154 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 TCP11Q8WWU5 503 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 RBM41Q96IZ5 413 aaKnown RBP9.22□□□□□ -0.93
LINC00558-201ENST00000569422 VCPIP1Q96JH7 1222 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 RAB6CQ9H0N0 254 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 CDT1Q9H211 546 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 RNF181Q9P0P0 153 aa9.22□□□□□ -0.93
LINC00558-201ENST00000569422 M0QYV0 167 aa9.21□□□□□ -0.93
LINC00558-201ENST00000569422 STAG3L1P0CL83 205 aa9.21□□□□□ -0.93
LINC00558-201ENST00000569422 INSRRP14616 1297 aa9.21□□□□□ -0.93
LINC00558-201ENST00000569422 RGS7P49802 495 aa9.21□□□□□ -0.93
LINC00558-201ENST00000569422 GDF10P55107 478 aa9.21□□□□□ -0.93
LINC00558-201ENST00000569422 ACTN3Q08043 901 aaPredicted RBP9.21□□□□□ -0.93
LINC00558-201ENST00000569422 PDIA2Q13087 525 aaKnown RBP9.21□□□□□ -0.93
LINC00558-201ENST00000569422 EAPPQ56P03 285 aaPredicted RBP9.21□□□□□ -0.93
LINC00558-201ENST00000569422 ANKRD20A8PQ5CZ79 823 aa9.21□□□□□ -0.93
LINC00558-201ENST00000569422 NOL9Q5SY16 702 aaKnown RBP9.21□□□□□ -0.93
LINC00558-201ENST00000569422 SWT1Q5T5J6 900 aaKnown RBP9.21□□□□□ -0.93
LINC00558-201ENST00000569422 SCYL2Q6P3W7 929 aa9.21□□□□□ -0.93
LINC00558-201ENST00000569422 VSTM1Q6UX27 236 aa9.21□□□□□ -0.93
LINC00558-201ENST00000569422 ZC3H18Q86VM9 953 aaKnown RBP9.21□□□□□ -0.93
LINC00558-201ENST00000569422 KIAA0319LQ8IZA0 1049 aa9.21□□□□□ -0.93
LINC00558-201ENST00000569422 CCDC33Q8N5R6 958 aa9.21□□□□□ -0.93
LINC00558-201ENST00000569422 KCTD6Q8NC69 237 aa9.21□□□□□ -0.93
LINC00558-201ENST00000569422 LSM14AQ8ND56 463 aaKnown RBP9.21□□□□□ -0.93
LINC00558-201ENST00000569422 FAM167AQ96KS9 214 aa9.21□□□□□ -0.93
LINC00558-201ENST00000569422 CCDC77Q9BR77 488 aa9.21□□□□□ -0.93
LINC00558-201ENST00000569422 SDCBP2Q9H190 292 aa9.21□□□□□ -0.93
LINC00558-201ENST00000569422 XYLT2Q9H1B5 865 aa9.21□□□□□ -0.93
LINC00558-201ENST00000569422 ZNF232Q9UNY5 417 aa9.21□□□□□ -0.93
LINC00558-201ENST00000569422 SOCS7O14512 581 aa9.21□□□□□ -0.94
LINC00558-201ENST00000569422 CNMDO75829 334 aa9.21□□□□□ -0.94
LINC00558-201ENST00000569422 EDNRBP24530 442 aa9.21□□□□□ -0.94
LINC00558-201ENST00000569422 POLR2BP30876 1174 aaKnown RBP9.21□□□□□ -0.94
LINC00558-201ENST00000569422 SCTRP47872 440 aa9.21□□□□□ -0.94
LINC00558-201ENST00000569422 OTUD4Q01804 1114 aaKnown RBP9.21□□□□□ -0.94
LINC00558-201ENST00000569422 MCL1Q07820 350 aa9.21□□□□□ -0.94
LINC00558-201ENST00000569422 TFDP3Q5H9I0 405 aa9.21□□□□□ -0.94
LINC00558-201ENST00000569422 KCNV1Q6PIU1 500 aa9.21□□□□□ -0.94
LINC00558-201ENST00000569422 RFX6Q8HWS3 928 aa9.21□□□□□ -0.94
LINC00558-201ENST00000569422 C1orf127Q8N9H9 656 aa9.21□□□□□ -0.94
LINC00558-201ENST00000569422 ACTL9Q8TC94 416 aa9.21□□□□□ -0.94
LINC00558-201ENST00000569422 NLRP7Q8WX94 980 aa9.21□□□□□ -0.94
LINC00558-201ENST00000569422 SERPINB12Q96P63 405 aa9.21□□□□□ -0.94
LINC00558-201ENST00000569422 ROPN1BQ9BZX4 212 aaPredicted RBP9.21□□□□□ -0.94
LINC00558-201ENST00000569422 RETREG1Q9H6L5 497 aa9.21□□□□□ -0.94
LINC00558-201ENST00000569422 ROPN1Q9HAT0 212 aaPredicted RBP9.21□□□□□ -0.94
LINC00558-201ENST00000569422 ABCF3Q9NUQ8 709 aa9.21□□□□□ -0.94
LINC00558-201ENST00000569422 AGAP1Q9UPQ3 857 aa9.21□□□□□ -0.94
LINC00558-201ENST00000569422 PHIPQ8WWQ0 1821 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 hCG_1818297A0A087WSY0 165 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 RBM47A0AV96 593 aaKnown RBP9.2□□□□□ -0.94
LINC00558-201ENST00000569422 ACKR2O00590 384 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 KLRC2P26717 231 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 ZNF132P52740 706 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 ATP11AP98196 1134 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 FAM102AQ5T9C2 384 aaPredicted RBP9.2□□□□□ -0.94
LINC00558-201ENST00000569422 SYDE1Q6ZW31 735 aaPredicted RBP9.2□□□□□ -0.94
LINC00558-201ENST00000569422 C12orf29Q8N999 325 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 SLCO2A1Q92959 643 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 OPTNQ96CV9 577 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 KLF6Q99612 283 aaPredicted RBP9.2□□□□□ -0.94
LINC00558-201ENST00000569422 FAM117AQ9C073 453 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 SLC40A1Q9NP59 571 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 NKIRAS1Q9NYS0 192 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 SIX4Q9UIU6 781 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 WDR91A4D1P6 747 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 GOLGA8RI6L899 631 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 LRCH4O75427 683 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 ERBB2P04626 1255 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 BASP1P80723 227 aaKnown RBP9.2□□□□□ -0.94
LINC00558-201ENST00000569422 MMRN1Q13201 1228 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 TFDP1Q14186 410 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 HIBCHQ6NVY1 386 aaPredicted RBP9.2□□□□□ -0.94
LINC00558-201ENST00000569422 NPNTQ6UXI9 565 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 CROCCP2Q86T23 111 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 RSAD2Q8WXG1 361 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 FGD4Q96M96 766 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 TGS1Q96RS0 853 aaKnown RBP9.2□□□□□ -0.94
LINC00558-201ENST00000569422 MPHOSPH6Q99547 160 aaKnown RBP9.2□□□□□ -0.94
LINC00558-201ENST00000569422 CD248Q9HCU0 757 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 C5orf60A6NFR6 353 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 CCT8L1PA6NM43 557 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 ABLIM1O14639 778 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 DNALI1O14645 258 aaPredicted RBP9.2□□□□□ -0.94
LINC00558-201ENST00000569422 FSBPO95073 299 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 SSTR1P30872 391 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 CDKN2BP42772 138 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 GCLCP48506 637 aaPredicted RBP9.2□□□□□ -0.94
LINC00558-201ENST00000569422 CAV1Q03135 178 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 PIGHQ14442 188 aaPredicted RBP9.2□□□□□ -0.94
LINC00558-201ENST00000569422 EFTUD2Q15029 972 aaKnown RBP eCLIP9.2□□□□□ -0.94
LINC00558-201ENST00000569422 AMHR2Q16671 573 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 C15orf59Q2T9L4 293 aaPredicted RBP9.2□□□□□ -0.94
LINC00558-201ENST00000569422 BBS9Q3SYG4 887 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms