RNA–Protein interactions for RNA: ENST00000569243.5

UBR1-209, Transcript of ubiquitin protein ligase E3 component n-recognin 1, human

TSL 3

Gene UBR1, Length 702 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR1-209	ENST00000569243	AGAP1	Q9UPQ3	857 aa		4.38	□□□□□ -1.71
UBR1-209	ENST00000569243	PCDHA3	Q9Y5H8	950 aa		4.38	□□□□□ -1.71
UBR1-209	ENST00000569243	IGKV2D-30	A0A075B6S6	120 aa		4.37	□□□□□ -1.71
UBR1-209	ENST00000569243	SERINC4	A6NH21	518 aa		4.37	□□□□□ -1.71
UBR1-209	ENST00000569243	TISP43	B9A030	160 aa		4.37	□□□□□ -1.71
UBR1-209	ENST00000569243	PRRT4	C9JH25	899 aa		4.37	□□□□□ -1.71
UBR1-209	ENST00000569243	QSOX1	O00391	747 aa		4.37	□□□□□ -1.71
UBR1-209	ENST00000569243	ADAMTS3	O15072	1205 aa		4.37	□□□□□ -1.71
UBR1-209	ENST00000569243	IL6R	P08887	468 aa	Predicted RBP	4.37	□□□□□ -1.71
UBR1-209	ENST00000569243	TYR	P14679	529 aa		4.37	□□□□□ -1.71
UBR1-209	ENST00000569243	EPHB2	P29323	1055 aa		4.37	□□□□□ -1.71
UBR1-209	ENST00000569243	EEFSEC	P57772	596 aa	Known RBP	4.37	□□□□□ -1.71
UBR1-209	ENST00000569243	LOXL3	P58215	753 aa		4.37	□□□□□ -1.71
UBR1-209	ENST00000569243	KRTAP10-5	P60370	271 aa		4.37	□□□□□ -1.71
UBR1-209	ENST00000569243	LONRF3	Q496Y0	759 aa		4.37	□□□□□ -1.71
UBR1-209	ENST00000569243	AMOT	Q4VCS5	1084 aa		4.37	□□□□□ -1.71
UBR1-209	ENST00000569243	TMEM240	Q5SV17	173 aa		4.37	□□□□□ -1.71
UBR1-209	ENST00000569243	TMEM108	Q6UXF1	575 aa		4.37	□□□□□ -1.71
UBR1-209	ENST00000569243	PRPF38A	Q8NAV1	312 aa	Known RBP	4.37	□□□□□ -1.71
UBR1-209	ENST00000569243	DENND1A	Q8TEH3	1009 aa		4.37	□□□□□ -1.71
UBR1-209	ENST00000569243	TNPO1	Q92973	898 aa	Known RBP	4.37	□□□□□ -1.71
UBR1-209	ENST00000569243	PTDSS2	Q9BVG9	487 aa		4.37	□□□□□ -1.71
UBR1-209	ENST00000569243	SERHL	Q9NQF3	203 aa		4.37	□□□□□ -1.71
UBR1-209	ENST00000569243	HESX1	Q9UBX0	185 aa		4.37	□□□□□ -1.71
UBR1-209	ENST00000569243	ABCF2	Q9UG63	623 aa		4.37	□□□□□ -1.71
UBR1-209	ENST00000569243	WASHC2C	Q9Y4E1	1318 aa		4.37	□□□□□ -1.71
UBR1-209	ENST00000569243		H0YIZ8	118 aa		4.36	□□□□□ -1.71
UBR1-209	ENST00000569243	PPM1D	O15297	605 aa		4.36	□□□□□ -1.71
UBR1-209	ENST00000569243	VPS4B	O75351	444 aa		4.36	□□□□□ -1.71
UBR1-209	ENST00000569243	KATNA1	O75449	491 aa		4.36	□□□□□ -1.71
UBR1-209	ENST00000569243	POU2F2	P09086	479 aa		4.36	□□□□□ -1.71
UBR1-209	ENST00000569243	AKAP5	P24588	427 aa		4.36	□□□□□ -1.71
UBR1-209	ENST00000569243	CYP2C18	P33260	490 aa		4.36	□□□□□ -1.71
UBR1-209	ENST00000569243	CDKN1C	P49918	316 aa	Predicted RBP	4.36	□□□□□ -1.71
UBR1-209	ENST00000569243	HOXA4	Q00056	320 aa	Predicted RBP	4.36	□□□□□ -1.71
UBR1-209	ENST00000569243	LAMB3	Q13751	1172 aa		4.36	□□□□□ -1.71
UBR1-209	ENST00000569243	IQCB1	Q15051	598 aa		4.36	□□□□□ -1.71
UBR1-209	ENST00000569243	TBC1D25	Q3MII6	688 aa		4.36	□□□□□ -1.71
UBR1-209	ENST00000569243	PRAMEF17	Q5VTA0	474 aa		4.36	□□□□□ -1.71
UBR1-209	ENST00000569243	PARS2	Q7L3T8	475 aa	Known RBP	4.36	□□□□□ -1.71
UBR1-209	ENST00000569243	SLAMF7	Q9NQ25	335 aa		4.36	□□□□□ -1.71
UBR1-209	ENST00000569243	DUSP22	Q9NRW4	184 aa		4.36	□□□□□ -1.71
UBR1-209	ENST00000569243	LMBRD1	Q9NUN5	540 aa		4.36	□□□□□ -1.71
UBR1-209	ENST00000569243	MRPS18A	Q9NVS2	196 aa	Known RBP	4.36	□□□□□ -1.71
UBR1-209	ENST00000569243	SH3BP4	Q9P0V3	963 aa		4.36	□□□□□ -1.71
UBR1-209	ENST00000569243	SBNO2	Q9Y2G9	1366 aa		4.36	□□□□□ -1.71
UBR1-209	ENST00000569243	CYP2D7	A0A087X1C5	515 aa		4.35	□□□□□ -1.71
UBR1-209	ENST00000569243	LRRC14B	A6NHZ5	514 aa		4.35	□□□□□ -1.71
UBR1-209	ENST00000569243		H7C1Q1	480 aa		4.35	□□□□□ -1.71
UBR1-209	ENST00000569243	FTL	P02792	175 aa	Predicted RBP	4.35	□□□□□ -1.71
UBR1-209	ENST00000569243	VCAM1	P19320	739 aa		4.35	□□□□□ -1.71
UBR1-209	ENST00000569243	VIPR2	P41587	438 aa		4.35	□□□□□ -1.71
UBR1-209	ENST00000569243	AMPD3	Q01432	767 aa		4.35	□□□□□ -1.71
UBR1-209	ENST00000569243	TMEM119	Q4V9L6	283 aa		4.35	□□□□□ -1.71
UBR1-209	ENST00000569243	KIAA1161	Q6NSJ0	714 aa		4.35	□□□□□ -1.71
UBR1-209	ENST00000569243	SLC18B1	Q6NT16	456 aa		4.35	□□□□□ -1.71
UBR1-209	ENST00000569243	LAYN	Q6UX15	382 aa		4.35	□□□□□ -1.71
UBR1-209	ENST00000569243	ZNF66	Q6ZN08	573 aa		4.35	□□□□□ -1.71
UBR1-209	ENST00000569243	CATSPERG	Q6ZRH7	1159 aa		4.35	□□□□□ -1.71
UBR1-209	ENST00000569243	MAVS	Q7Z434	540 aa		4.35	□□□□□ -1.71
UBR1-209	ENST00000569243	YTHDF3	Q7Z739	585 aa	Known RBP	4.35	□□□□□ -1.71
UBR1-209	ENST00000569243	PPP1R3B	Q86XI6	285 aa		4.35	□□□□□ -1.71
UBR1-209	ENST00000569243	GALNT16	Q8N428	558 aa		4.35	□□□□□ -1.71
UBR1-209	ENST00000569243	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	4.35	□□□□□ -1.71
UBR1-209	ENST00000569243	NUP88	Q99567	741 aa	Predicted RBP	4.35	□□□□□ -1.71
UBR1-209	ENST00000569243	FSD1L	Q9BXM9	530 aa		4.35	□□□□□ -1.71
UBR1-209	ENST00000569243	EBF3	Q9H4W6	596 aa		4.35	□□□□□ -1.71
UBR1-209	ENST00000569243	TCF7L1	Q9HCS4	588 aa		4.35	□□□□□ -1.71
UBR1-209	ENST00000569243	PNPO	Q9NVS9	261 aa		4.35	□□□□□ -1.71
UBR1-209	ENST00000569243	PLEKHM1	Q9Y4G2	1056 aa		4.35	□□□□□ -1.71
UBR1-209	ENST00000569243		M0QYG6	137 aa		4.34	□□□□□ -1.71
UBR1-209	ENST00000569243	DNAJB5	O75953	348 aa		4.34	□□□□□ -1.71
UBR1-209	ENST00000569243	SNUPN	O95149	360 aa	Known RBP	4.34	□□□□□ -1.71
UBR1-209	ENST00000569243	DLD	P09622	509 aa	Known RBP	4.34	□□□□□ -1.71
UBR1-209	ENST00000569243	CYP2C9	P11712	490 aa		4.34	□□□□□ -1.71
UBR1-209	ENST00000569243	CHRM3	P20309	590 aa		4.34	□□□□□ -1.71
UBR1-209	ENST00000569243	PHKA1	P46020	1223 aa		4.34	□□□□□ -1.71
UBR1-209	ENST00000569243	PXN	P49023	591 aa	Predicted RBP	4.34	□□□□□ -1.71
UBR1-209	ENST00000569243	MAP2K6	P52564	334 aa		4.34	□□□□□ -1.71
UBR1-209	ENST00000569243	ZNF134	P52741	427 aa		4.34	□□□□□ -1.71
UBR1-209	ENST00000569243	NKX6-1	P78426	367 aa	Predicted RBP	4.34	□□□□□ -1.71
UBR1-209	ENST00000569243	BOP1	Q14137	746 aa	Known RBP	4.34	□□□□□ -1.71
UBR1-209	ENST00000569243	PGS1	Q32NB8	556 aa		4.34	□□□□□ -1.71
UBR1-209	ENST00000569243	PCID2	Q5JVF3	399 aa		4.34	□□□□□ -1.71
UBR1-209	ENST00000569243	TREML2	Q5T2D2	321 aa		4.34	□□□□□ -1.71
UBR1-209	ENST00000569243	KRT73	Q86Y46	540 aa		4.34	□□□□□ -1.71
UBR1-209	ENST00000569243	FAM46D	Q8NEK8	389 aa		4.34	□□□□□ -1.71
UBR1-209	ENST00000569243	BRIX1	Q8TDN6	353 aa	Known RBP	4.34	□□□□□ -1.71
UBR1-209	ENST00000569243	SLC46A1	Q96NT5	459 aa		4.34	□□□□□ -1.71
UBR1-209	ENST00000569243	PRSS22	Q9GZN4	317 aa		4.34	□□□□□ -1.71
UBR1-209	ENST00000569243	TUBA8	Q9NY65	449 aa	Predicted RBP	4.34	□□□□□ -1.71
UBR1-209	ENST00000569243	ELOVL5	Q9NYP7	299 aa		4.34	□□□□□ -1.71
UBR1-209	ENST00000569243	SSX2IP	Q9Y2D8	614 aa		4.34	□□□□□ -1.71
UBR1-209	ENST00000569243	PPEF2	O14830	753 aa		4.33	□□□□□ -1.72
UBR1-209	ENST00000569243	DCLK1	O15075	740 aa		4.33	□□□□□ -1.72
UBR1-209	ENST00000569243	ERC2	O15083	957 aa		4.33	□□□□□ -1.72
UBR1-209	ENST00000569243	PRKCB	P05771	671 aa		4.33	□□□□□ -1.72
UBR1-209	ENST00000569243	TH	P07101	528 aa		4.33	□□□□□ -1.72
UBR1-209	ENST00000569243	NPS	P0C0P6	89 aa		4.33	□□□□□ -1.72
UBR1-209	ENST00000569243	LRPAP1	P30533	357 aa		4.33	□□□□□ -1.72

Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms