RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 TUBB4AP04350 444 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 LPLP06858 475 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 VIMP08670 466 aaKnown RBP3.52□□□□□ -1.85
VPS35-208ENST00000568612 LINGO3P0C6S8 592 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 VSIG10L2P0DP72 767 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 ALDH3A1P30838 453 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 ARHGAP25P42331 645 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 MASP1P48740 699 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 GUCY2FP51841 1108 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 PMS2P54278 862 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 UBXN2AP68543 259 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 PHC1P78364 1004 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 BASP1P80723 227 aaKnown RBP3.52□□□□□ -1.85
VPS35-208ENST00000568612 TMPRSS15P98073 1019 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 CDK17Q00537 523 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 MGAT5Q09328 741 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 IFFO1Q0D2I5 559 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 DUSP8Q13202 625 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 DRP2Q13474 957 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 BLMHQ13867 455 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 DHCR24Q15392 516 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 CDSNQ15517 529 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 TAF11Q15544 211 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 ARHGAP29Q52LW3 1261 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 USP39Q53GS9 565 aaKnown RBP3.52□□□□□ -1.85
VPS35-208ENST00000568612 CCDC93Q567U6 631 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 CT83Q5H943 113 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 CFAP157Q5JU67 520 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 BEND6Q5SZJ8 279 aaPredicted RBP3.52□□□□□ -1.85
VPS35-208ENST00000568612 IQSEC1Q6DN90 963 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 FIP1L1Q6UN15 594 aaKnown RBP3.52□□□□□ -1.85
VPS35-208ENST00000568612 BEND5Q7L4P6 421 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 YTHDF3Q7Z739 585 aaKnown RBP3.52□□□□□ -1.85
VPS35-208ENST00000568612 STRA8Q7Z7C7 330 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 CLEC14AQ86T13 490 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 MSANTD4Q8NCY6 345 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 GDAP1Q8TB36 358 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 FAM71BQ8TC56 605 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 MAIP1Q8WWC4 291 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 GAB3Q8WWW8 586 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 ZNF75CPQ92670 426 aaPredicted RBP3.52□□□□□ -1.85
VPS35-208ENST00000568612 TBC1D20Q96BZ9 403 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 OPTNQ96CV9 577 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 ABHD8Q96I13 439 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 SNX27Q96L92 541 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 C8orf48Q96LL4 319 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 C1orf74Q96LT6 269 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 NEK1Q96PY6 1258 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 NR1H4Q96RI1 486 aaPredicted RBP3.52□□□□□ -1.85
VPS35-208ENST00000568612 SMC6Q96SB8 1091 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 GPHA2Q96T91 129 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 TCF25Q9BQ70 676 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 EIF2AQ9BY44 585 aaKnown RBP3.52□□□□□ -1.85
VPS35-208ENST00000568612 FUT8Q9BYC5 575 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 KRTAP9-3Q9BYQ3 159 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 CSRNP2Q9H175 543 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 GOLPH3LQ9H4A5 285 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 VCPKMTQ9H867 229 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 CLK4Q9HAZ1 481 aaKnown RBP3.52□□□□□ -1.85
VPS35-208ENST00000568612 DDX21Q9NR30 783 aaKnown RBP eCLIP3.52□□□□□ -1.85
VPS35-208ENST00000568612 FKBP14Q9NWM8 211 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 ING3Q9NXR8 418 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 SLC5A4Q9NY91 659 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 CFDP1Q9UEE9 299 aaPredicted RBP3.52□□□□□ -1.85
VPS35-208ENST00000568612 JAG2Q9Y219 1238 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 APOBEC2Q9Y235 224 aaKnown RBP3.52□□□□□ -1.85
VPS35-208ENST00000568612 SH3GLB1Q9Y371 365 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 PCDHGB3Q9Y5G1 929 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 PPP2R3BQ9Y5P8 575 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 CCDC18Q5T9S5 1454 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 IFT140Q96RY7 1462 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 WDR7Q9Y4E6 1490 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 AK9Q5TCS8 1911 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 ITSN2Q9NZM3 1697 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 HFM1A2PYH4 1435 aa3.52□□□□□ -1.85
VPS35-208ENST00000568612 CPSF1Q10570 1443 aaKnown RBP3.52□□□□□ -1.85
VPS35-208ENST00000568612 ANKRD30AQ9BXX3 1397 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 TTC41PQ6P2S7 1318 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 GPR75-ASB3A0A0A6YYF3 556 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 HTR3EA5X5Y0 456 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 TMEM247A6NEH6 219 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 LRRIQ3A6PVS8 624 aaPredicted RBP3.51□□□□□ -1.85
VPS35-208ENST00000568612 H0YC42 278 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 M0QX08 132 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 EBAG9O00559 213 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 MAP2K7O14733 419 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 MATN3O15232 486 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 TEX28O15482 410 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 ZSCAN12O43309 604 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 AKR1B10O60218 316 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 MGRN1O60291 552 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 NRP2O60462 931 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 TSPAN1O60635 241 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 ZNF254O75437 659 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 ALDH1A2O94788 518 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 STAMBPO95630 424 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 AMHP03971 560 aa3.51□□□□□ -1.85
VPS35-208ENST00000568612 JUNP05412 331 aaKnown RBP3.51□□□□□ -1.85
VPS35-208ENST00000568612 HNRNPCP07910 306 aaKnown RBP eCLIP3.51□□□□□ -1.85
VPS35-208ENST00000568612 PFKMP08237 780 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms