RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 CLSTN1O94985 981 aa14.91□□□□□ -0.02
CLN3-235ENST00000568497 SEC24AO95486 1093 aa14.91□□□□□ -0.02
CLN3-235ENST00000568497 VNN2O95498 520 aa14.91□□□□□ -0.02
CLN3-235ENST00000568497 RAP1GAPP47736 663 aa14.91□□□□□ -0.02
CLN3-235ENST00000568497 NOVA1P51513 510 aaKnown RBP14.91□□□□□ -0.02
CLN3-235ENST00000568497 ROR1Q01973 937 aa14.91□□□□□ -0.02
CLN3-235ENST00000568497 TDRD10Q5VZ19 366 aaKnown RBP14.91□□□□□ -0.02
CLN3-235ENST00000568497 SPOPLQ6IQ16 392 aa14.91□□□□□ -0.02
CLN3-235ENST00000568497 CLEC17AQ6ZS10 378 aa14.91□□□□□ -0.02
CLN3-235ENST00000568497 TRAPPC11Q7Z392 1133 aa14.91□□□□□ -0.02
CLN3-235ENST00000568497 CD302Q8IX05 232 aa14.91□□□□□ -0.02
CLN3-235ENST00000568497 C12orf56Q8IXR9 622 aa14.91□□□□□ -0.02
CLN3-235ENST00000568497 STKLD1Q8NE28 680 aa14.91□□□□□ -0.02
CLN3-235ENST00000568497 OR10T2Q8NGX3 314 aa14.91□□□□□ -0.02
CLN3-235ENST00000568497 NELFBQ8WX92 580 aa14.91□□□□□ -0.02
CLN3-235ENST00000568497 GSDMAQ96QA5 445 aa14.91□□□□□ -0.02
CLN3-235ENST00000568497 FNBP1Q96RU3 617 aa14.91□□□□□ -0.02
CLN3-235ENST00000568497 PI4K2AQ9BTU6 479 aa14.91□□□□□ -0.02
CLN3-235ENST00000568497 CRISPLD1Q9H336 500 aa14.91□□□□□ -0.02
CLN3-235ENST00000568497 DERAQ9Y315 318 aa14.91□□□□□ -0.02
CLN3-235ENST00000568497 NME7Q9Y5B8 376 aa14.91□□□□□ -0.02
CLN3-235ENST00000568497 NOTCH4Q99466 2003 aa14.91□□□□□ -0.02
CLN3-235ENST00000568497 ZZEF1O43149 2961 aa14.91□□□□□ -0.02
CLN3-235ENST00000568497 TMEM8BA6NDV4 472 aa14.9□□□□□ -0.02
CLN3-235ENST00000568497 XPOTO43592 962 aaKnown RBP14.9□□□□□ -0.02
CLN3-235ENST00000568497 VNN1O95497 513 aa14.9□□□□□ -0.02
CLN3-235ENST00000568497 TNNC2P02585 160 aa14.9□□□□□ -0.02
CLN3-235ENST00000568497 GCLMP48507 274 aa14.9□□□□□ -0.02
CLN3-235ENST00000568497 AARSP49588 968 aaKnown RBP eCLIP14.9□□□□□ -0.02
CLN3-235ENST00000568497 TAF6P49848 677 aa14.9□□□□□ -0.02
CLN3-235ENST00000568497 MYL6P60660 151 aa14.9□□□□□ -0.02
CLN3-235ENST00000568497 PPP3CAQ08209 521 aa14.9□□□□□ -0.02
CLN3-235ENST00000568497 ADAM9Q13443 819 aa14.9□□□□□ -0.02
CLN3-235ENST00000568497 TANGO2Q6ICL3 276 aa14.9□□□□□ -0.02
CLN3-235ENST00000568497 SCARA5Q6ZMJ2 495 aa14.9□□□□□ -0.02
CLN3-235ENST00000568497 FAM186BQ8IYM0 893 aa14.9□□□□□ -0.02
CLN3-235ENST00000568497 ZCCHC14Q8WYQ9 949 aaKnown RBP14.9□□□□□ -0.02
CLN3-235ENST00000568497 ANKRD36BP1Q96IX9 119 aa14.9□□□□□ -0.02
CLN3-235ENST00000568497 GBP4Q96PP9 640 aa14.9□□□□□ -0.02
CLN3-235ENST00000568497 MED15Q96RN5 788 aa14.9□□□□□ -0.02
CLN3-235ENST00000568497 DUSP9Q99956 384 aaKnown RBP14.9□□□□□ -0.02
CLN3-235ENST00000568497 LSM14BQ9BX40 385 aaKnown RBP14.9□□□□□ -0.02
CLN3-235ENST00000568497 ADAM33Q9BZ11 813 aa14.9□□□□□ -0.02
CLN3-235ENST00000568497 RMND1Q9NWS8 449 aa14.9□□□□□ -0.02
CLN3-235ENST00000568497 L1RE1Q9UN81 338 aa14.9□□□□□ -0.02
CLN3-235ENST00000568497 TRAF3IP3Q9Y228 551 aa14.9□□□□□ -0.02
CLN3-235ENST00000568497 SNX9Q9Y5X1 595 aa14.9□□□□□ -0.02
CLN3-235ENST00000568497 PIAS3Q9Y6X2 628 aa14.9□□□□□ -0.02
CLN3-235ENST00000568497 M0QZQ0 153 aa14.89□□□□□ -0.03
CLN3-235ENST00000568497 TRAPPC3O43617 180 aa14.89□□□□□ -0.03
CLN3-235ENST00000568497 ZNF806P0C7X5 589 aa14.89□□□□□ -0.03
CLN3-235ENST00000568497 ZNF252P-AS1Q0IIN9 211 aa14.89□□□□□ -0.03
CLN3-235ENST00000568497 ELAVL2Q12926 359 aaKnown RBP14.89□□□□□ -0.03
CLN3-235ENST00000568497 ORC1Q13415 861 aa14.89□□□□□ -0.03
CLN3-235ENST00000568497 BIRC3Q13489 604 aa14.89□□□□□ -0.03
CLN3-235ENST00000568497 MRPL58Q14197 206 aaKnown RBP14.89□□□□□ -0.03
CLN3-235ENST00000568497 DUOXA2Q1HG44 320 aa14.89□□□□□ -0.03
CLN3-235ENST00000568497 RNF43Q68DV7 783 aa14.89□□□□□ -0.03
CLN3-235ENST00000568497 OVOS1Q6IE37 1185 aa14.89□□□□□ -0.03
CLN3-235ENST00000568497 RNF19BQ6ZMZ0 732 aa14.89□□□□□ -0.03
CLN3-235ENST00000568497 LRRTM3Q86VH5 581 aa14.89□□□□□ -0.03
CLN3-235ENST00000568497 PARD3BQ8TEW8 1205 aa14.89□□□□□ -0.03
CLN3-235ENST00000568497 IRF7Q92985 503 aa14.89□□□□□ -0.03
CLN3-235ENST00000568497 ELSPBP1Q96BH3 223 aa14.89□□□□□ -0.03
CLN3-235ENST00000568497 CCDC34Q96HJ3 373 aa14.89□□□□□ -0.03
CLN3-235ENST00000568497 HPDLQ96IR7 371 aa14.89□□□□□ -0.03
CLN3-235ENST00000568497 TRMT61BQ9BVS5 477 aaKnown RBP14.89□□□□□ -0.03
CLN3-235ENST00000568497 NUP62CLQ9H1M0 184 aa14.89□□□□□ -0.03
CLN3-235ENST00000568497 TMLHEQ9NVH6 421 aa14.89□□□□□ -0.03
CLN3-235ENST00000568497 GDE1Q9NZC3 331 aa14.89□□□□□ -0.03
CLN3-235ENST00000568497 KIAA1468Q9P260 1216 aa14.89□□□□□ -0.03
CLN3-235ENST00000568497 DNMT3BQ9UBC3 853 aaKnown RBP14.89□□□□□ -0.03
CLN3-235ENST00000568497 NXF1Q9UBU9 619 aaKnown RBP14.89□□□□□ -0.03
CLN3-235ENST00000568497 SLC27A5Q9Y2P5 690 aa14.89□□□□□ -0.03
CLN3-235ENST00000568497 TICRRQ7Z2Z1 1910 aa14.89□□□□□ -0.03
CLN3-235ENST00000568497 KPNA7A9QM74 516 aa14.88□□□□□ -0.03
CLN3-235ENST00000568497 SYN3O14994 580 aa14.88□□□□□ -0.03
CLN3-235ENST00000568497 PHACTR2O75167 634 aa14.88□□□□□ -0.03
CLN3-235ENST00000568497 ATP2C2O75185 946 aa14.88□□□□□ -0.03
CLN3-235ENST00000568497 C4BPAP04003 597 aaKnown RBP14.88□□□□□ -0.03
CLN3-235ENST00000568497 CDH8P55286 799 aa14.88□□□□□ -0.03
CLN3-235ENST00000568497 RBP5P82980 135 aa14.88□□□□□ -0.03
CLN3-235ENST00000568497 YWHAHQ04917 246 aaPredicted RBP14.88□□□□□ -0.03
CLN3-235ENST00000568497 UVSSAQ2YD98 709 aa14.88□□□□□ -0.03
CLN3-235ENST00000568497 HSP90AA4PQ58FG1 418 aa14.88□□□□□ -0.03
CLN3-235ENST00000568497 CENPPQ6IPU0 288 aa14.88□□□□□ -0.03
CLN3-235ENST00000568497 USP37Q86T82 979 aa14.88□□□□□ -0.03
CLN3-235ENST00000568497 WDR49Q8IV35 697 aa14.88□□□□□ -0.03
CLN3-235ENST00000568497 SLC9A9Q8IVB4 645 aa14.88□□□□□ -0.03
CLN3-235ENST00000568497 PDCL2Q8N4E4 241 aa14.88□□□□□ -0.03
CLN3-235ENST00000568497 SPEM1Q8N4L4 309 aa14.88□□□□□ -0.03
CLN3-235ENST00000568497 ATAD1Q8NBU5 361 aa14.88□□□□□ -0.03
CLN3-235ENST00000568497 GOLGA5Q8TBA6 731 aa14.88□□□□□ -0.03
CLN3-235ENST00000568497 CACTINQ8WUQ7 758 aaKnown RBP14.88□□□□□ -0.03
CLN3-235ENST00000568497 MRPL45Q9BRJ2 306 aaKnown RBP14.88□□□□□ -0.03
CLN3-235ENST00000568497 SDCBP2Q9H190 292 aa14.88□□□□□ -0.03
CLN3-235ENST00000568497 SMOC1Q9H4F8 434 aa14.88□□□□□ -0.03
CLN3-235ENST00000568497 SMYD3Q9H7B4 428 aa14.88□□□□□ -0.03
CLN3-235ENST00000568497 KIAA1586Q9HCI6 787 aa14.88□□□□□ -0.03
CLN3-235ENST00000568497 HOOK1Q9UJC3 728 aaKnown RBP14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms