RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 EFCAB13Q8IY85 973 aa17.49■□□□□ 0.39
CLK3-223ENST00000568488 PNPLA1Q8N8W4 532 aa17.49■□□□□ 0.39
CLK3-223ENST00000568488 NECAB1Q8N987 351 aa17.49■□□□□ 0.39
CLK3-223ENST00000568488 OR2I1PQ8NGU4 316 aa17.49■□□□□ 0.39
CLK3-223ENST00000568488 WHAMMQ8TF30 809 aa17.49■□□□□ 0.39
CLK3-223ENST00000568488 BICD1Q96G01 975 aa17.49■□□□□ 0.39
CLK3-223ENST00000568488 RUSC1Q9BVN2 902 aa17.49■□□□□ 0.39
CLK3-223ENST00000568488 PILRBQ9UKJ0 227 aa17.49■□□□□ 0.39
CLK3-223ENST00000568488 DNM3Q9UQ16 869 aa17.49■□□□□ 0.39
CLK3-223ENST00000568488 PCDHB9Q9Y5E1 797 aa17.49■□□□□ 0.39
CLK3-223ENST00000568488 CYB561D2O14569 222 aa17.48■□□□□ 0.39
CLK3-223ENST00000568488 PRPF40AO75400 957 aaKnown RBP17.48■□□□□ 0.39
CLK3-223ENST00000568488 CYP11A1P05108 521 aa17.48■□□□□ 0.39
CLK3-223ENST00000568488 USP17L7P0C7H9 530 aa17.48■□□□□ 0.39
CLK3-223ENST00000568488 CSH1P0DML2 217 aa17.48■□□□□ 0.39
CLK3-223ENST00000568488 CSH2P0DML3 217 aa17.48■□□□□ 0.39
CLK3-223ENST00000568488 HNRNPLP14866 589 aaKnown RBP eCLIP17.48■□□□□ 0.39
CLK3-223ENST00000568488 DPP6P42658 865 aa17.48■□□□□ 0.39
CLK3-223ENST00000568488 SMTNP53814 917 aa17.48■□□□□ 0.39
CLK3-223ENST00000568488 RAD51AP2Q09MP3 1159 aa17.48■□□□□ 0.39
CLK3-223ENST00000568488 TRIP6Q15654 476 aaKnown RBP17.48■□□□□ 0.39
CLK3-223ENST00000568488 DUOXA1Q1HG43 343 aa17.48■□□□□ 0.39
CLK3-223ENST00000568488 SPATA1Q5VX52 437 aa17.48■□□□□ 0.39
CLK3-223ENST00000568488 C9orf57Q5W0N0 161 aa17.48■□□□□ 0.39
CLK3-223ENST00000568488 MINDY1Q8N5J2 469 aa17.48■□□□□ 0.39
CLK3-223ENST00000568488 ALLCQ8N6M5 410 aa17.48■□□□□ 0.39
CLK3-223ENST00000568488 TXNDC5Q8NBS9 432 aaKnown RBP17.48■□□□□ 0.39
CLK3-223ENST00000568488 MDM1Q8TC05 714 aa17.48■□□□□ 0.39
CLK3-223ENST00000568488 SNX29Q8TEQ0 813 aa17.48■□□□□ 0.39
CLK3-223ENST00000568488 CAMK1GQ96NX5 476 aa17.48■□□□□ 0.39
CLK3-223ENST00000568488 SLC22A12Q96S37 553 aa17.48■□□□□ 0.39
CLK3-223ENST00000568488 RPF1Q9H9Y2 349 aaKnown RBP17.48■□□□□ 0.39
CLK3-223ENST00000568488 C17orf75Q9HAS0 396 aa17.48■□□□□ 0.39
CLK3-223ENST00000568488 POLMQ9NP87 494 aaPredicted RBP17.48■□□□□ 0.39
CLK3-223ENST00000568488 DSEQ9UL01 958 aa17.48■□□□□ 0.39
CLK3-223ENST00000568488 RAXQ9Y2V3 346 aa17.48■□□□□ 0.39
CLK3-223ENST00000568488 PCDHB5Q9Y5E4 795 aa17.48■□□□□ 0.39
CLK3-223ENST00000568488 MYO16Q9Y6X6 1858 aa17.48■□□□□ 0.39
CLK3-223ENST00000568488 GON4LQ3T8J9 2241 aa17.47■□□□□ 0.39
CLK3-223ENST00000568488 TRAV19A0A0A6YYK7 116 aa17.47■□□□□ 0.39
CLK3-223ENST00000568488 NFATC1O95644 943 aa17.47■□□□□ 0.39
CLK3-223ENST00000568488 TIE1P35590 1138 aa17.47■□□□□ 0.39
CLK3-223ENST00000568488 MRPS21P82921 87 aaKnown RBP17.47■□□□□ 0.39
CLK3-223ENST00000568488 SMARCB1Q12824 385 aa17.47■□□□□ 0.39
CLK3-223ENST00000568488 MAPK7Q13164 816 aa17.47■□□□□ 0.39
CLK3-223ENST00000568488 BYSLQ13895 437 aaKnown RBP17.47■□□□□ 0.39
CLK3-223ENST00000568488 HNRNPDQ14103 355 aaKnown RBP17.47■□□□□ 0.39
CLK3-223ENST00000568488 ENOX2Q16206 610 aaKnown RBP17.47■□□□□ 0.39
CLK3-223ENST00000568488 RINT1Q6NUQ1 792 aa17.47■□□□□ 0.39
CLK3-223ENST00000568488 DCP1BQ8IZD4 617 aaKnown RBP17.47■□□□□ 0.39
CLK3-223ENST00000568488 CEP76Q8TAP6 659 aa17.47■□□□□ 0.39
CLK3-223ENST00000568488 SH3RF2Q8TEC5 729 aa17.47■□□□□ 0.39
CLK3-223ENST00000568488 HMGB4Q8WW32 186 aa17.47■□□□□ 0.39
CLK3-223ENST00000568488 PYM1Q9BRP8 204 aaKnown RBP17.47■□□□□ 0.39
CLK3-223ENST00000568488 NTPCRQ9BSD7 190 aaKnown RBP17.47■□□□□ 0.39
CLK3-223ENST00000568488 PI4K2AQ9BTU6 479 aa17.47■□□□□ 0.39
CLK3-223ENST00000568488 ADAMTS9Q9P2N4 1935 aa17.47■□□□□ 0.39
CLK3-223ENST00000568488 SH3BP5O60239 455 aa17.46■□□□□ 0.39
CLK3-223ENST00000568488 KLF8O95600 359 aaPredicted RBP17.46■□□□□ 0.39
CLK3-223ENST00000568488 CD59P13987 128 aa17.46■□□□□ 0.39
CLK3-223ENST00000568488 PAX3P23760 479 aa17.46■□□□□ 0.39
CLK3-223ENST00000568488 OPRD1P41143 372 aa17.46■□□□□ 0.39
CLK3-223ENST00000568488 GUCY1B3Q02153 619 aa17.46■□□□□ 0.39
CLK3-223ENST00000568488 MAP7D1Q3KQU3 841 aa17.46■□□□□ 0.39
CLK3-223ENST00000568488 SPDYCQ5MJ68 293 aa17.46■□□□□ 0.39
CLK3-223ENST00000568488 WSCD1Q658N2 575 aa17.46■□□□□ 0.39
CLK3-223ENST00000568488 JADE1Q6IE81 842 aa17.46■□□□□ 0.39
CLK3-223ENST00000568488 CCNI2Q6ZMN8 369 aaPredicted RBP17.46■□□□□ 0.39
CLK3-223ENST00000568488 ARL14EPQ8N8R7 260 aaPredicted RBP17.46■□□□□ 0.39
CLK3-223ENST00000568488 SPRYD3Q8NCJ5 442 aa17.46■□□□□ 0.39
CLK3-223ENST00000568488 TMEM161BQ8NDZ6 487 aa17.46■□□□□ 0.39
CLK3-223ENST00000568488 GLIS3Q8NEA6 775 aa17.46■□□□□ 0.39
CLK3-223ENST00000568488 SPIRE2Q8WWL2 714 aa17.46■□□□□ 0.39
CLK3-223ENST00000568488 UXTQ9UBK9 157 aaPredicted RBP17.46■□□□□ 0.39
CLK3-223ENST00000568488 KCNG1Q9UIX4 513 aa17.46■□□□□ 0.39
CLK3-223ENST00000568488 PI4KAP42356 2102 aa17.45■□□□□ 0.38
CLK3-223ENST00000568488 KIAA1549LQ6ZVL6 1849 aa17.45■□□□□ 0.38
CLK3-223ENST00000568488 SGK1O00141 431 aa17.45■□□□□ 0.38
CLK3-223ENST00000568488 PIRO00625 290 aa17.45■□□□□ 0.38
CLK3-223ENST00000568488 SERPINF2P08697 491 aa17.45■□□□□ 0.38
CLK3-223ENST00000568488 MAPTP10636 758 aaKnown RBP17.45■□□□□ 0.38
CLK3-223ENST00000568488 RPL6Q02878 288 aaKnown RBP17.45■□□□□ 0.38
CLK3-223ENST00000568488 USP4Q13107 963 aa17.45■□□□□ 0.38
CLK3-223ENST00000568488 SAFBQ15424 915 aaKnown RBP eCLIP17.45■□□□□ 0.38
CLK3-223ENST00000568488 KYAT1Q16773 422 aa17.45■□□□□ 0.38
CLK3-223ENST00000568488 DDR2Q16832 855 aa17.45■□□□□ 0.38
CLK3-223ENST00000568488 ZC2HC1CQ53FD0 456 aaPredicted RBP17.45■□□□□ 0.38
CLK3-223ENST00000568488 C1orf186Q6ZWK4 172 aa17.45■□□□□ 0.38
CLK3-223ENST00000568488 ADAMTS14Q8WXS8 1223 aa17.45■□□□□ 0.38
CLK3-223ENST00000568488 TMEM206Q9H813 350 aa17.45■□□□□ 0.38
CLK3-223ENST00000568488 TMLHEQ9NVH6 421 aa17.45■□□□□ 0.38
CLK3-223ENST00000568488 DENND4CQ5VZ89 1909 aa17.45■□□□□ 0.38
CLK3-223ENST00000568488 MYMKA6NI61 221 aa17.44■□□□□ 0.38
CLK3-223ENST00000568488 ARHGAP33O14559 1287 aa17.44■□□□□ 0.38
CLK3-223ENST00000568488 AP5Z1O43299 807 aa17.44■□□□□ 0.38
CLK3-223ENST00000568488 TADA3O75528 432 aa17.44■□□□□ 0.38
CLK3-223ENST00000568488 FTH1P19P0C7X4 201 aa17.44■□□□□ 0.38
CLK3-223ENST00000568488 PLS3P13797 630 aa17.44■□□□□ 0.38
CLK3-223ENST00000568488 HOXD12P35452 270 aa17.44■□□□□ 0.38
CLK3-223ENST00000568488 LIG4P49917 911 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms