RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 RRN3P2A6NIE6 340 aa21.36■■□□□ 1.01
CLN3-230ENST00000568076 A6NJR5 290 aa21.36■■□□□ 1.01
CLN3-230ENST00000568076 ACSL3O95573 720 aa21.36■■□□□ 1.01
CLN3-230ENST00000568076 SMIM10L2AP0DMW4 78 aa21.36■■□□□ 1.01
CLN3-230ENST00000568076 SMIM10L2BP0DMW5 78 aa21.36■■□□□ 1.01
CLN3-230ENST00000568076 SLCO1A2P46721 670 aa21.36■■□□□ 1.01
CLN3-230ENST00000568076 HIC1Q14526 733 aa21.36■■□□□ 1.01
CLN3-230ENST00000568076 DCAF4L1Q3SXM0 396 aa21.36■■□□□ 1.01
CLN3-230ENST00000568076 C6orf118Q5T5N4 469 aa21.36■■□□□ 1.01
CLN3-230ENST00000568076 GSTA5Q7RTV2 222 aa21.36■■□□□ 1.01
CLN3-230ENST00000568076 LENG1Q96BZ8 264 aaPredicted RBP21.36■■□□□ 1.01
CLN3-230ENST00000568076 HAUS1Q96CS2 278 aa21.36■■□□□ 1.01
CLN3-230ENST00000568076 FLRT1Q9NZU1 646 aa21.36■■□□□ 1.01
CLN3-230ENST00000568076 CITO14578 2027 aa21.36■■□□□ 1.01
CLN3-230ENST00000568076 KAT6AQ92794 2004 aa21.36■■□□□ 1.01
CLN3-230ENST00000568076 PPEF2O14830 753 aa21.36■■□□□ 1.01
CLN3-230ENST00000568076 RGS16O15492 202 aaPredicted RBP21.36■■□□□ 1.01
CLN3-230ENST00000568076 F2P00734 622 aa21.36■■□□□ 1.01
CLN3-230ENST00000568076 ZSCAN5DPP0CG00 497 aa21.36■■□□□ 1.01
CLN3-230ENST00000568076 TNFAIP8L3Q5GJ75 292 aa21.36■■□□□ 1.01
CLN3-230ENST00000568076 KCNT1Q5JUK3 1230 aa21.36■■□□□ 1.01
CLN3-230ENST00000568076 DPH6Q7L8W6 267 aa21.36■■□□□ 1.01
CLN3-230ENST00000568076 PPANQ9NQ55 473 aaKnown RBP21.36■■□□□ 1.01
CLN3-230ENST00000568076 ZNF236Q9UL36 1845 aa21.35■■□□□ 1.01
CLN3-230ENST00000568076 SRRM3A6NNA2 597 aaPredicted RBP21.35■■□□□ 1.01
CLN3-230ENST00000568076 RASGRF2O14827 1237 aa21.35■■□□□ 1.01
CLN3-230ENST00000568076 PSMC4P43686 418 aa21.35■■□□□ 1.01
CLN3-230ENST00000568076 AUHQ13825 339 aaKnown RBP21.35■■□□□ 1.01
CLN3-230ENST00000568076 OASLQ15646 514 aaKnown RBP21.35■■□□□ 1.01
CLN3-230ENST00000568076 MORN1Q5T089 497 aa21.35■■□□□ 1.01
CLN3-230ENST00000568076 HIBCHQ6NVY1 386 aaPredicted RBP21.35■■□□□ 1.01
CLN3-230ENST00000568076 NLRP14Q86W24 1093 aa21.35■■□□□ 1.01
CLN3-230ENST00000568076 ALLCQ8N6M5 410 aa21.35■■□□□ 1.01
CLN3-230ENST00000568076 MYCBPAPQ8TBZ2 947 aa21.35■■□□□ 1.01
CLN3-230ENST00000568076 MDM1Q8TC05 714 aa21.35■■□□□ 1.01
CLN3-230ENST00000568076 OSMRQ99650 979 aa21.35■■□□□ 1.01
CLN3-230ENST00000568076 GCOM2Q9BZD3 368 aaPredicted RBP21.35■■□□□ 1.01
CLN3-230ENST00000568076 ADAM7Q9H2U9 754 aa21.35■■□□□ 1.01
CLN3-230ENST00000568076 ZNF148Q9UQR1 794 aa21.35■■□□□ 1.01
CLN3-230ENST00000568076 HES2Q9Y543 173 aa21.35■■□□□ 1.01
CLN3-230ENST00000568076 TTC4O95801 387 aa21.34■■□□□ 1.01
CLN3-230ENST00000568076 PFKMP08237 780 aa21.34■■□□□ 1.01
CLN3-230ENST00000568076 ETS1P14921 441 aa21.34■■□□□ 1.01
CLN3-230ENST00000568076 LMNB2Q03252 620 aa21.34■■□□□ 1.01
CLN3-230ENST00000568076 P3H1Q32P28 736 aa21.34■■□□□ 1.01
CLN3-230ENST00000568076 SLC27A1Q6PCB7 646 aa21.34■■□□□ 1.01
CLN3-230ENST00000568076 CATSPER4Q7RTX7 472 aa21.34■■□□□ 1.01
CLN3-230ENST00000568076 C12orf29Q8N999 325 aa21.34■■□□□ 1.01
CLN3-230ENST00000568076 BBOF1Q8ND07 529 aa21.34■■□□□ 1.01
CLN3-230ENST00000568076 SNX27Q96L92 541 aa21.34■■□□□ 1.01
CLN3-230ENST00000568076 CCT8L2Q96SF2 557 aa21.34■■□□□ 1.01
CLN3-230ENST00000568076 TSPYL1Q9H0U9 437 aa21.34■■□□□ 1.01
CLN3-230ENST00000568076 NRCAMQ92823 1304 aa21.34■■□□□ 1.01
CLN3-230ENST00000568076 MBLAC1A4D2B0 266 aaPredicted RBP21.34■■□□□ 1.01
CLN3-230ENST00000568076 E7EVH7 732 aa21.34■■□□□ 1.01
CLN3-230ENST00000568076 AGTP01019 485 aa21.34■■□□□ 1.01
CLN3-230ENST00000568076 KYNUQ16719 465 aa21.34■■□□□ 1.01
CLN3-230ENST00000568076 OLFML2BQ68BL8 750 aa21.34■■□□□ 1.01
CLN3-230ENST00000568076 LCLAT1Q6UWP7 414 aa21.34■■□□□ 1.01
CLN3-230ENST00000568076 ZNF473Q8WTR7 871 aaKnown RBP21.34■■□□□ 1.01
CLN3-230ENST00000568076 NT5C1AQ9BXI3 368 aa21.34■■□□□ 1.01
CLN3-230ENST00000568076 PLEKHA5Q9HAU0 1116 aa21.34■■□□□ 1.01
CLN3-230ENST00000568076 NINJ2Q9NZG7 142 aa21.34■■□□□ 1.01
CLN3-230ENST00000568076 TUBGCP4Q9UGJ1 667 aa21.34■■□□□ 1.01
CLN3-230ENST00000568076 TSPAN16Q9UKR8 245 aa21.34■■□□□ 1.01
CLN3-230ENST00000568076 DRG1Q9Y295 367 aaKnown RBP21.34■■□□□ 1.01
CLN3-230ENST00000568076 TRIP11Q15643 1979 aa21.33■■□□□ 1.01
CLN3-230ENST00000568076 TRAPPC3O43617 180 aa21.33■■□□□ 1.01
CLN3-230ENST00000568076 KRT7P08729 469 aa21.33■■□□□ 1.01
CLN3-230ENST00000568076 CD48P09326 243 aa21.33■■□□□ 1.01
CLN3-230ENST00000568076 MMP13P45452 471 aa21.33■■□□□ 1.01
CLN3-230ENST00000568076 VCPP55072 806 aaKnown RBP21.33■■□□□ 1.01
CLN3-230ENST00000568076 ZBTB6Q15916 424 aa21.33■■□□□ 1.01
CLN3-230ENST00000568076 LONRF1Q17RB8 773 aa21.33■■□□□ 1.01
CLN3-230ENST00000568076 FAM102AQ5T9C2 384 aaPredicted RBP21.33■■□□□ 1.01
CLN3-230ENST00000568076 MFSD5Q6N075 450 aa21.33■■□□□ 1.01
CLN3-230ENST00000568076 TRNP1Q6NT89 227 aa21.33■■□□□ 1.01
CLN3-230ENST00000568076 CROCCP2Q86T23 111 aa21.33■■□□□ 1.01
CLN3-230ENST00000568076 NKD2Q969F2 451 aaPredicted RBP21.33■■□□□ 1.01
CLN3-230ENST00000568076 C18orf25Q96B23 403 aaPredicted RBP21.33■■□□□ 1.01
CLN3-230ENST00000568076 MRPL45Q9BRJ2 306 aaKnown RBP21.33■■□□□ 1.01
CLN3-230ENST00000568076 ROPN1BQ9BZX4 212 aaPredicted RBP21.33■■□□□ 1.01
CLN3-230ENST00000568076 CNOT10Q9H9A5 744 aaKnown RBP21.33■■□□□ 1.01
CLN3-230ENST00000568076 ROPN1Q9HAT0 212 aaPredicted RBP21.33■■□□□ 1.01
CLN3-230ENST00000568076 RNF19AQ9NV58 838 aa21.33■■□□□ 1.01
CLN3-230ENST00000568076 GJD2Q9UKL4 321 aa21.33■■□□□ 1.01
CLN3-230ENST00000568076 NME7Q9Y5B8 376 aa21.33■■□□□ 1.01
CLN3-230ENST00000568076 SMIM35A0A1B0GVV1 85 aa21.32■■□□□ 1
CLN3-230ENST00000568076 PIK3R2O00459 728 aa21.32■■□□□ 1
CLN3-230ENST00000568076 EBAG9O00559 213 aa21.32■■□□□ 1
CLN3-230ENST00000568076 ZNF865P0CJ78 1059 aaPredicted RBP21.32■■□□□ 1
CLN3-230ENST00000568076 CYP2C9P11712 490 aa21.32■■□□□ 1
CLN3-230ENST00000568076 KDELR1P24390 212 aa21.32■■□□□ 1
CLN3-230ENST00000568076 TAF5Q15542 800 aa21.32■■□□□ 1
CLN3-230ENST00000568076 TAZQ16635 292 aa21.32■■□□□ 1
CLN3-230ENST00000568076 HADHQ16836 314 aaKnown RBP21.32■■□□□ 1
CLN3-230ENST00000568076 PIWIL1Q96J94 861 aaKnown RBP21.32■■□□□ 1
CLN3-230ENST00000568076 FAM124BQ9H5Z6 455 aaPredicted RBP21.32■■□□□ 1
CLN3-230ENST00000568076 SLC5A4Q9NY91 659 aa21.32■■□□□ 1
CLN3-230ENST00000568076 SAE1Q9UBE0 346 aaPredicted RBP21.32■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms