RNA–Protein interactions for RNA: ENST00000567804.1

CLN3-228, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-228ENST00000567804 ZNF268Q14587 947 aaPredicted RBP16.03■□□□□ 0.16
CLN3-228ENST00000567804 SLC39A14Q15043 492 aa16.03■□□□□ 0.16
CLN3-228ENST00000567804 DDR2Q16832 855 aa16.03■□□□□ 0.16
CLN3-228ENST00000567804 CCDC142Q17RM4 750 aa16.03■□□□□ 0.16
CLN3-228ENST00000567804 TMEM196Q5HYL7 178 aa16.03■□□□□ 0.16
CLN3-228ENST00000567804 FSTL4Q6MZW2 842 aa16.03■□□□□ 0.16
CLN3-228ENST00000567804 PKN3Q6P5Z2 889 aa16.03■□□□□ 0.16
CLN3-228ENST00000567804 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.03■□□□□ 0.16
CLN3-228ENST00000567804 WDR5BQ86VZ2 330 aa16.03■□□□□ 0.16
CLN3-228ENST00000567804 GPD1LQ8N335 351 aa16.03■□□□□ 0.16
CLN3-228ENST00000567804 TOP6BLQ8N6T0 577 aa16.03■□□□□ 0.16
CLN3-228ENST00000567804 TRMT2BQ96GJ1 504 aaKnown RBP16.03■□□□□ 0.16
CLN3-228ENST00000567804 PANK2Q9BZ23 570 aa16.03■□□□□ 0.16
CLN3-228ENST00000567804 MTMR12Q9C0I1 747 aa16.03■□□□□ 0.16
CLN3-228ENST00000567804 TMEM206Q9H813 350 aa16.03■□□□□ 0.16
CLN3-228ENST00000567804 PDE11AQ9HCR9 933 aa16.03■□□□□ 0.16
CLN3-228ENST00000567804 SEMA4GQ9NTN9 838 aa16.03■□□□□ 0.16
CLN3-228ENST00000567804 UXTQ9UBK9 157 aaPredicted RBP16.03■□□□□ 0.16
CLN3-228ENST00000567804 SIX4Q9UIU6 781 aa16.03■□□□□ 0.16
CLN3-228ENST00000567804 GTF3C4Q9UKN8 822 aa16.03■□□□□ 0.16
CLN3-228ENST00000567804 MTMR6Q9Y217 621 aa16.03■□□□□ 0.16
CLN3-228ENST00000567804 SNX9Q9Y5X1 595 aa16.03■□□□□ 0.16
CLN3-228ENST00000567804 TRDMT1O14717 391 aaKnown RBP16.02■□□□□ 0.16
CLN3-228ENST00000567804 GABRDO14764 452 aa16.02■□□□□ 0.16
CLN3-228ENST00000567804 HCRTO43612 131 aa16.02■□□□□ 0.16
CLN3-228ENST00000567804 TMEM191BP0C7N4 346 aa16.02■□□□□ 0.16
CLN3-228ENST00000567804 ARSAP15289 507 aa16.02■□□□□ 0.16
CLN3-228ENST00000567804 LHX1P48742 406 aa16.02■□□□□ 0.16
CLN3-228ENST00000567804 RBP5P82980 135 aa16.02■□□□□ 0.16
CLN3-228ENST00000567804 CSRP2Q16527 193 aa16.02■□□□□ 0.16
CLN3-228ENST00000567804 CFAP221Q4G0U5 840 aa16.02■□□□□ 0.16
CLN3-228ENST00000567804 ADGRF2Q8IZF7 708 aa16.02■□□□□ 0.16
CLN3-228ENST00000567804 NOC3LQ8WTT2 800 aaKnown RBP16.02■□□□□ 0.16
CLN3-228ENST00000567804 MYRFLQ96LU7 910 aa16.02■□□□□ 0.16
CLN3-228ENST00000567804 PTPRJQ12913 1337 aa16.01■□□□□ 0.15
CLN3-228ENST00000567804 SDK1Q7Z5N4 2213 aa16.01■□□□□ 0.15
CLN3-228ENST00000567804 DCDC2BA2VCK2 349 aa16.01■□□□□ 0.15
CLN3-228ENST00000567804 KIAA0391O15091 583 aaKnown RBP16.01■□□□□ 0.15
CLN3-228ENST00000567804 PCSK1P29120 753 aa16.01■□□□□ 0.15
CLN3-228ENST00000567804 GRSF1Q12849 480 aaKnown RBP eCLIP16.01■□□□□ 0.15
CLN3-228ENST00000567804 MTF1Q14872 753 aa16.01■□□□□ 0.15
CLN3-228ENST00000567804 SOWAHAQ2M3V2 549 aa16.01■□□□□ 0.15
CLN3-228ENST00000567804 LMBRD2Q68DH5 695 aaPredicted RBP16.01■□□□□ 0.15
CLN3-228ENST00000567804 CC2D1AQ6P1N0 951 aaPredicted RBP16.01■□□□□ 0.15
CLN3-228ENST00000567804 PRR23CQ6ZRP0 262 aa16.01■□□□□ 0.15
CLN3-228ENST00000567804 CEP68Q76N32 757 aa16.01■□□□□ 0.15
CLN3-228ENST00000567804 SPATA2LQ8IUW3 424 aaPredicted RBP16.01■□□□□ 0.15
CLN3-228ENST00000567804 CCDC65Q8IXS2 484 aa16.01■□□□□ 0.15
CLN3-228ENST00000567804 FAM160A2Q8N612 972 aaPredicted RBP16.01■□□□□ 0.15
CLN3-228ENST00000567804 PDILTQ8N807 584 aa16.01■□□□□ 0.15
CLN3-228ENST00000567804 NETO1Q8TDF5 533 aa16.01■□□□□ 0.15
CLN3-228ENST00000567804 FUBP3Q96I24 572 aaKnown RBP eCLIP16.01■□□□□ 0.15
CLN3-228ENST00000567804 ANKRD36BP1Q96IX9 119 aa16.01■□□□□ 0.15
CLN3-228ENST00000567804 INTS13Q9NVM9 706 aa16.01■□□□□ 0.15
CLN3-228ENST00000567804 CCDC163A0A0D9SF12 145 aa16■□□□□ 0.15
CLN3-228ENST00000567804 SLC30A4O14863 429 aa16■□□□□ 0.15
CLN3-228ENST00000567804 EGFP01133 1207 aa16■□□□□ 0.15
CLN3-228ENST00000567804 NASPP49321 788 aaPredicted RBP16■□□□□ 0.15
CLN3-228ENST00000567804 AMPD2Q01433 879 aa16■□□□□ 0.15
CLN3-228ENST00000567804 FAM160A1Q05DH4 1040 aa16■□□□□ 0.15
CLN3-228ENST00000567804 USP4Q13107 963 aa16■□□□□ 0.15
CLN3-228ENST00000567804 PDGFRLQ15198 375 aa16■□□□□ 0.15
CLN3-228ENST00000567804 ZNF77Q15935 545 aa16■□□□□ 0.15
CLN3-228ENST00000567804 FAM171BQ6P995 826 aa16■□□□□ 0.15
CLN3-228ENST00000567804 DPH6Q7L8W6 267 aa16■□□□□ 0.15
CLN3-228ENST00000567804 LIMS2Q7Z4I7 341 aa16■□□□□ 0.15
CLN3-228ENST00000567804 GLIS3Q8NEA6 775 aa16■□□□□ 0.15
CLN3-228ENST00000567804 OR5B17Q8NGF7 314 aa16■□□□□ 0.15
CLN3-228ENST00000567804 KBTBD7Q8WVZ9 684 aa16■□□□□ 0.15
CLN3-228ENST00000567804 INTS4Q96HW7 963 aaKnown RBP16■□□□□ 0.15
CLN3-228ENST00000567804 SLC22A12Q96S37 553 aa16■□□□□ 0.15
CLN3-228ENST00000567804 TNMDQ9H2S6 317 aa16■□□□□ 0.15
CLN3-228ENST00000567804 ZSCAN16Q9H4T2 348 aaPredicted RBP16■□□□□ 0.15
CLN3-228ENST00000567804 TRPC7Q9HCX4 862 aa16■□□□□ 0.15
CLN3-228ENST00000567804 LOC105378220A0A1B0GUY1 285 aaPredicted RBP15.99■□□□□ 0.15
CLN3-228ENST00000567804 ZNF233A6NK53 670 aa15.99■□□□□ 0.15
CLN3-228ENST00000567804 ATG13O75143 517 aa15.99■□□□□ 0.15
CLN3-228ENST00000567804 RNF40O75150 1001 aa15.99■□□□□ 0.15
CLN3-228ENST00000567804 TNNC2P02585 160 aa15.99■□□□□ 0.15
CLN3-228ENST00000567804 CKMP06732 381 aa15.99■□□□□ 0.15
CLN3-228ENST00000567804 USP17L7P0C7H9 530 aa15.99■□□□□ 0.15
CLN3-228ENST00000567804 DRD1P21728 446 aa15.99■□□□□ 0.15
CLN3-228ENST00000567804 GJA4P35212 333 aa15.99■□□□□ 0.15
CLN3-228ENST00000567804 MAGEA11P43364 429 aa15.99■□□□□ 0.15
CLN3-228ENST00000567804 PXNP49023 591 aaPredicted RBP15.99■□□□□ 0.15
CLN3-228ENST00000567804 MYO1EQ12965 1108 aa15.99■□□□□ 0.15
CLN3-228ENST00000567804 SURF1Q15526 300 aa15.99■□□□□ 0.15
CLN3-228ENST00000567804 C4orf50Q6ZRC1 276 aa15.99■□□□□ 0.15
CLN3-228ENST00000567804 STXBP4Q6ZWJ1 553 aa15.99■□□□□ 0.15
CLN3-228ENST00000567804 CBWD2Q8IUF1 395 aa15.99■□□□□ 0.15
CLN3-228ENST00000567804 SCN4BQ8IWT1 228 aa15.99■□□□□ 0.15
CLN3-228ENST00000567804 CPA6Q8N4T0 437 aa15.99■□□□□ 0.15
CLN3-228ENST00000567804 GAB3Q8WWW8 586 aa15.99■□□□□ 0.15
CLN3-228ENST00000567804 HPS3Q969F9 1004 aa15.99■□□□□ 0.15
CLN3-228ENST00000567804 HPDLQ96IR7 371 aa15.99■□□□□ 0.15
CLN3-228ENST00000567804 CYP2S1Q96SQ9 504 aa15.99■□□□□ 0.15
CLN3-228ENST00000567804 SYT15Q9BQS2 421 aa15.99■□□□□ 0.15
CLN3-228ENST00000567804 ECT2Q9H8V3 914 aa15.99■□□□□ 0.15
CLN3-228ENST00000567804 FBRSL1Q9HCM7 1045 aaKnown RBP15.99■□□□□ 0.15
CLN3-228ENST00000567804 GCNT4Q9P109 453 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms