RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 TXNDC11Q6PKC3 985 aa12.21□□□□□ -0.45
CLN3-226ENST00000567160 TCEAL8Q8IYN2 117 aa12.21□□□□□ -0.45
CLN3-226ENST00000567160 CAMKK1Q8N5S9 505 aa12.21□□□□□ -0.45
CLN3-226ENST00000567160 KCNN1Q92952 543 aa12.21□□□□□ -0.45
CLN3-226ENST00000567160 DDX27Q96GQ7 796 aaKnown RBP12.21□□□□□ -0.45
CLN3-226ENST00000567160 DHTKD1Q96HY7 919 aaPredicted RBP12.21□□□□□ -0.45
CLN3-226ENST00000567160 ZBTB45Q96K62 511 aaPredicted RBP12.21□□□□□ -0.45
CLN3-226ENST00000567160 UROC1Q96N76 676 aa12.21□□□□□ -0.45
CLN3-226ENST00000567160 ACO2Q99798 780 aaKnown RBP12.21□□□□□ -0.45
CLN3-226ENST00000567160 TCHPQ9BT92 498 aa12.21□□□□□ -0.45
CLN3-226ENST00000567160 KCTD10Q9H3F6 313 aa12.21□□□□□ -0.45
CLN3-226ENST00000567160 SLC32A1Q9H598 525 aa12.21□□□□□ -0.45
CLN3-226ENST00000567160 PDZD7Q9H5P4 517 aa12.21□□□□□ -0.45
CLN3-226ENST00000567160 INSL5Q9Y5Q6 135 aa12.21□□□□□ -0.45
CLN3-226ENST00000567160 ASH1LQ9NR48 2969 aaKnown RBP12.21□□□□□ -0.46
CLN3-226ENST00000567160 ITPR1Q14643 2758 aa12.2□□□□□ -0.46
CLN3-226ENST00000567160 LNP1A1A4G5 178 aa12.2□□□□□ -0.46
CLN3-226ENST00000567160 BCLAF3A2AJT9 711 aaKnown RBP12.2□□□□□ -0.46
CLN3-226ENST00000567160 NRG2O14511 850 aaPredicted RBP12.2□□□□□ -0.46
CLN3-226ENST00000567160 PTGESO14684 152 aa12.2□□□□□ -0.46
CLN3-226ENST00000567160 KHNYNO15037 678 aaKnown RBP12.2□□□□□ -0.46
CLN3-226ENST00000567160 TGFB1I1O43294 461 aa12.2□□□□□ -0.46
CLN3-226ENST00000567160 CALUO43852 315 aaPredicted RBP12.2□□□□□ -0.46
CLN3-226ENST00000567160 PIGRP01833 764 aa12.2□□□□□ -0.46
CLN3-226ENST00000567160 MYL4P12829 197 aa12.2□□□□□ -0.46
CLN3-226ENST00000567160 TKTP29401 623 aaKnown RBP12.2□□□□□ -0.46
CLN3-226ENST00000567160 CYP2J2P51589 502 aa12.2□□□□□ -0.46
CLN3-226ENST00000567160 PMS1P54277 932 aaKnown RBP12.2□□□□□ -0.46
CLN3-226ENST00000567160 ZNF568Q3ZCX4 644 aa12.2□□□□□ -0.46
CLN3-226ENST00000567160 ARHGAP29Q52LW3 1261 aa12.2□□□□□ -0.46
CLN3-226ENST00000567160 SOWAHCQ53LP3 525 aaPredicted RBP12.2□□□□□ -0.46
CLN3-226ENST00000567160 TPGS2Q68CL5 300 aa12.2□□□□□ -0.46
CLN3-226ENST00000567160 ANKRD40Q6AI12 368 aa12.2□□□□□ -0.46
CLN3-226ENST00000567160 KIAA1211LQ6NV74 962 aa12.2□□□□□ -0.46
CLN3-226ENST00000567160 ARMCX5Q6P1M9 558 aa12.2□□□□□ -0.46
CLN3-226ENST00000567160 MPZL3Q6UWV2 235 aa12.2□□□□□ -0.46
CLN3-226ENST00000567160 ZPBP2Q6X784 338 aa12.2□□□□□ -0.46
CLN3-226ENST00000567160 HS2ST1Q7LGA3 356 aa12.2□□□□□ -0.46
CLN3-226ENST00000567160 NOC3LQ8WTT2 800 aaKnown RBP12.2□□□□□ -0.46
CLN3-226ENST00000567160 POMGNT1Q8WZA1 660 aa12.2□□□□□ -0.46
CLN3-226ENST00000567160 TSG101Q99816 390 aa12.2□□□□□ -0.46
CLN3-226ENST00000567160 DUSP15Q9H1R2 295 aaPredicted RBP12.2□□□□□ -0.46
CLN3-226ENST00000567160 TSPY26PQ9H489 355 aa12.2□□□□□ -0.46
CLN3-226ENST00000567160 PCIF1Q9H4Z3 704 aa12.2□□□□□ -0.46
CLN3-226ENST00000567160 AGPAT3Q9NRZ7 376 aa12.2□□□□□ -0.46
CLN3-226ENST00000567160 H7C4K7 107 aa12.19□□□□□ -0.46
CLN3-226ENST00000567160 PDXKO00764 312 aa12.19□□□□□ -0.46
CLN3-226ENST00000567160 DPYSL4O14531 572 aa12.19□□□□□ -0.46
CLN3-226ENST00000567160 N4BP3O15049 544 aa12.19□□□□□ -0.46
CLN3-226ENST00000567160 CLDN3O15551 220 aa12.19□□□□□ -0.46
CLN3-226ENST00000567160 HYAL3O43820 417 aaPredicted RBP12.19□□□□□ -0.46
CLN3-226ENST00000567160 TOM1L1O75674 476 aa12.19□□□□□ -0.46
CLN3-226ENST00000567160 RECQL4O94761 1208 aa12.19□□□□□ -0.46
CLN3-226ENST00000567160 NR3C1P04150 777 aa12.19□□□□□ -0.46
CLN3-226ENST00000567160 EPHA5P54756 1037 aa12.19□□□□□ -0.46
CLN3-226ENST00000567160 ARPP19P56211 112 aa12.19□□□□□ -0.46
CLN3-226ENST00000567160 ZNF445P59923 1031 aa12.19□□□□□ -0.46
CLN3-226ENST00000567160 NOLC1Q14978 699 aaKnown RBP eCLIP12.19□□□□□ -0.46
CLN3-226ENST00000567160 TEAD2Q15562 447 aa12.19□□□□□ -0.46
CLN3-226ENST00000567160 NAB2Q15742 525 aa12.19□□□□□ -0.46
CLN3-226ENST00000567160 ZCWPW2Q504Y3 356 aa12.19□□□□□ -0.46
CLN3-226ENST00000567160 WDR44Q5JSH3 913 aa12.19□□□□□ -0.46
CLN3-226ENST00000567160 CENPPQ6IPU0 288 aa12.19□□□□□ -0.46
CLN3-226ENST00000567160 PDZD3Q86UT5 571 aa12.19□□□□□ -0.46
CLN3-226ENST00000567160 ADPGKQ9BRR6 497 aa12.19□□□□□ -0.46
CLN3-226ENST00000567160 CBWD1Q9BRT8 395 aa12.19□□□□□ -0.46
CLN3-226ENST00000567160 MSTO1Q9BUK6 570 aa12.19□□□□□ -0.46
CLN3-226ENST00000567160 CDT1Q9H211 546 aa12.19□□□□□ -0.46
CLN3-226ENST00000567160 SNTG2Q9NY99 539 aa12.19□□□□□ -0.46
CLN3-226ENST00000567160 RWDD2AQ9UIY3 292 aa12.19□□□□□ -0.46
CLN3-226ENST00000567160 MAFFQ9ULX9 164 aa12.19□□□□□ -0.46
CLN3-226ENST00000567160 TNFSF13BQ9Y275 285 aa12.19□□□□□ -0.46
CLN3-226ENST00000567160 SMG1Q96Q15 3661 aaKnown RBP12.19□□□□□ -0.46
CLN3-226ENST00000567160 ASCC3Q8N3C0 2202 aaKnown RBP12.18□□□□□ -0.46
CLN3-226ENST00000567160 NCANO14594 1321 aa12.18□□□□□ -0.46
CLN3-226ENST00000567160 HELZ2Q9BYK8 2649 aaKnown RBP12.18□□□□□ -0.46
CLN3-226ENST00000567160 BICDL2A1A5D9 508 aa12.18□□□□□ -0.46
CLN3-226ENST00000567160 GOLGA8IPA6NC78 632 aa12.18□□□□□ -0.46
CLN3-226ENST00000567160 PCNX2A6NKB5 2137 aa12.18□□□□□ -0.46
CLN3-226ENST00000567160 GOLGA8JA6NMD2 632 aa12.18□□□□□ -0.46
CLN3-226ENST00000567160 H0Y626 953 aa12.18□□□□□ -0.46
CLN3-226ENST00000567160 ABLIM1O14639 778 aa12.18□□□□□ -0.46
CLN3-226ENST00000567160 MOSPD3O75425 235 aa12.18□□□□□ -0.46
CLN3-226ENST00000567160 TRIM16O95361 564 aa12.18□□□□□ -0.46
CLN3-226ENST00000567160 PROZP22891 400 aa12.18□□□□□ -0.46
CLN3-226ENST00000567160 ERCC5P28715 1186 aaPredicted RBP12.18□□□□□ -0.46
CLN3-226ENST00000567160 ADSSP30520 456 aa12.18□□□□□ -0.46
CLN3-226ENST00000567160 HOXC13P31276 330 aa12.18□□□□□ -0.46
CLN3-226ENST00000567160 PLCB2Q00722 1185 aa12.18□□□□□ -0.46
CLN3-226ENST00000567160 LRRC63Q05C16 580 aa12.18□□□□□ -0.46
CLN3-226ENST00000567160 TWF1Q12792 350 aa12.18□□□□□ -0.46
CLN3-226ENST00000567160 GRSF1Q12849 480 aaKnown RBP eCLIP12.18□□□□□ -0.46
CLN3-226ENST00000567160 TPD52L1Q16890 204 aaPredicted RBP12.18□□□□□ -0.46
CLN3-226ENST00000567160 SEZ6Q53EL9 994 aa12.18□□□□□ -0.46
CLN3-226ENST00000567160 TTI2Q6NXR4 508 aa12.18□□□□□ -0.46
CLN3-226ENST00000567160 C11orf74Q86VG3 221 aa12.18□□□□□ -0.46
CLN3-226ENST00000567160 PROSER1Q86XN7 944 aa12.18□□□□□ -0.46
CLN3-226ENST00000567160 HS6ST3Q8IZP7 471 aa12.18□□□□□ -0.46
CLN3-226ENST00000567160 AOPEPQ8N6M6 819 aa12.18□□□□□ -0.46
CLN3-226ENST00000567160 ZSWIM2Q8NEG5 633 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms