RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 LRG1P02750 347 aa20.82■□□□□ 0.92
CLN3-225ENST00000566824 CCDC130P13994 396 aa20.82■□□□□ 0.92
CLN3-225ENST00000566824 BDNFP23560 247 aa20.82■□□□□ 0.92
CLN3-225ENST00000566824 PON1P27169 355 aa20.82■□□□□ 0.92
CLN3-225ENST00000566824 MTHFRP42898 656 aa20.82■□□□□ 0.92
CLN3-225ENST00000566824 COPB1P53618 953 aaKnown RBP20.82■□□□□ 0.92
CLN3-225ENST00000566824 RAD23BP54727 409 aa20.82■□□□□ 0.92
CLN3-225ENST00000566824 DDR2Q16832 855 aa20.82■□□□□ 0.92
CLN3-225ENST00000566824 TJAP1Q5JTD0 557 aa20.82■□□□□ 0.92
CLN3-225ENST00000566824 TRIM65Q6PJ69 517 aa20.82■□□□□ 0.92
CLN3-225ENST00000566824 GBP6Q6ZN66 633 aa20.82■□□□□ 0.92
CLN3-225ENST00000566824 LUZP1Q86V48 1076 aa20.82■□□□□ 0.92
CLN3-225ENST00000566824 UNC93AQ86WB7 457 aa20.82■□□□□ 0.92
CLN3-225ENST00000566824 SPATA2LQ8IUW3 424 aaPredicted RBP20.82■□□□□ 0.92
CLN3-225ENST00000566824 PPM1KQ8N3J5 372 aa20.82■□□□□ 0.92
CLN3-225ENST00000566824 GIPC2Q8TF65 315 aa20.82■□□□□ 0.92
CLN3-225ENST00000566824 C2orf15Q8WU43 125 aaKnown RBP20.82■□□□□ 0.92
CLN3-225ENST00000566824 RIPOR3Q96MK2 946 aa20.82■□□□□ 0.92
CLN3-225ENST00000566824 FAM49BQ9NUQ9 324 aa20.82■□□□□ 0.92
CLN3-225ENST00000566824 TTC28Q96AY4 2481 aa20.82■□□□□ 0.92
CLN3-225ENST00000566824 PES1O00541 588 aaKnown RBP20.81■□□□□ 0.92
CLN3-225ENST00000566824 CETN1Q12798 172 aa20.81■□□□□ 0.92
CLN3-225ENST00000566824 SMARCB1Q12824 385 aa20.81■□□□□ 0.92
CLN3-225ENST00000566824 SLC5A9Q2M3M2 681 aa20.81■□□□□ 0.92
CLN3-225ENST00000566824 CFAP221Q4G0U5 840 aa20.81■□□□□ 0.92
CLN3-225ENST00000566824 POTEHQ6S545 545 aa20.81■□□□□ 0.92
CLN3-225ENST00000566824 RTL10Q7L3V2 364 aa20.81■□□□□ 0.92
CLN3-225ENST00000566824 FUKQ8N0W3 1084 aa20.81■□□□□ 0.92
CLN3-225ENST00000566824 SLC4A11Q8NBS3 891 aa20.81■□□□□ 0.92
CLN3-225ENST00000566824 FAXDC2Q96IV6 333 aa20.81■□□□□ 0.92
CLN3-225ENST00000566824 CORO1BQ9BR76 489 aa20.81■□□□□ 0.92
CLN3-225ENST00000566824 LRRC3Q9BY71 257 aa20.81■□□□□ 0.92
CLN3-225ENST00000566824 ZNF334Q9HCZ1 680 aaPredicted RBP20.81■□□□□ 0.92
CLN3-225ENST00000566824 WDR6Q9NNW5 1121 aaKnown RBP20.81■□□□□ 0.92
CLN3-225ENST00000566824 HSFX1Q9UBD0 423 aa20.81■□□□□ 0.92
CLN3-225ENST00000566824 BDP1A6H8Y1 2624 aa20.81■□□□□ 0.92
CLN3-225ENST00000566824 CLUHO75153 1309 aa20.81■□□□□ 0.92
CLN3-225ENST00000566824 GTPBP10A4D1E9 387 aaKnown RBP20.8■□□□□ 0.92
CLN3-225ENST00000566824 RNF225M0QZC1 329 aaPredicted RBP20.8■□□□□ 0.92
CLN3-225ENST00000566824 XYLBO75191 536 aa20.8■□□□□ 0.92
CLN3-225ENST00000566824 POU2F2P09086 479 aa20.8■□□□□ 0.92
CLN3-225ENST00000566824 CCR2P41597 374 aa20.8■□□□□ 0.92
CLN3-225ENST00000566824 KLK7P49862 253 aa20.8■□□□□ 0.92
CLN3-225ENST00000566824 MTMR3Q13615 1198 aa20.8■□□□□ 0.92
CLN3-225ENST00000566824 EXOC3L4Q17RC7 722 aa20.8■□□□□ 0.92
CLN3-225ENST00000566824 ITFG1Q8TB96 612 aa20.8■□□□□ 0.92
CLN3-225ENST00000566824 TCEAL4Q96EI5 215 aa20.8■□□□□ 0.92
CLN3-225ENST00000566824 NT5C1AQ9BXI3 368 aa20.8■□□□□ 0.92
CLN3-225ENST00000566824 ABCB6Q9NP58 842 aa20.8■□□□□ 0.92
CLN3-225ENST00000566824 UBE2TQ9NPD8 197 aaPredicted RBP20.8■□□□□ 0.92
CLN3-225ENST00000566824 CD320Q9NPF0 282 aa20.8■□□□□ 0.92
CLN3-225ENST00000566824 NCOR1O75376 2440 aa20.8■□□□□ 0.92
CLN3-225ENST00000566824 ZNF638Q14966 1978 aaKnown RBP20.8■□□□□ 0.92
CLN3-225ENST00000566824 VCANP13611 3396 aa20.8■□□□□ 0.92
CLN3-225ENST00000566824 OBSL1O75147 1896 aa20.79■□□□□ 0.92
CLN3-225ENST00000566824 SMTNL1A8MU46 457 aa20.79■□□□□ 0.92
CLN3-225ENST00000566824 RHOP08100 348 aa20.79■□□□□ 0.92
CLN3-225ENST00000566824 ALDH1A3P47895 512 aa20.79■□□□□ 0.92
CLN3-225ENST00000566824 TUFMP49411 452 aaKnown RBP20.79■□□□□ 0.92
CLN3-225ENST00000566824 ZP2Q05996 745 aa20.79■□□□□ 0.92
CLN3-225ENST00000566824 MAPRE1Q15691 268 aaKnown RBP20.79■□□□□ 0.92
CLN3-225ENST00000566824 CYP26C1Q6V0L0 522 aa20.79■□□□□ 0.92
CLN3-225ENST00000566824 C4orf50Q6ZRC1 276 aa20.79■□□□□ 0.92
CLN3-225ENST00000566824 FAM35AQ86V20 835 aa20.79■□□□□ 0.92
CLN3-225ENST00000566824 TMC8Q8IU68 726 aa20.79■□□□□ 0.92
CLN3-225ENST00000566824 SCN4BQ8IWT1 228 aa20.79■□□□□ 0.92
CLN3-225ENST00000566824 SLC2A14Q8TDB8 520 aa20.79■□□□□ 0.92
CLN3-225ENST00000566824 ADAMTS19Q8TE59 1207 aa20.79■□□□□ 0.92
CLN3-225ENST00000566824 FUBP3Q96I24 572 aaKnown RBP eCLIP20.79■□□□□ 0.92
CLN3-225ENST00000566824 RPGRIP1Q96KN7 1286 aa20.79■□□□□ 0.92
CLN3-225ENST00000566824 TNIP3Q96KP6 325 aa20.79■□□□□ 0.92
CLN3-225ENST00000566824 PHF7Q9BWX1 381 aaPredicted RBP20.79■□□□□ 0.92
CLN3-225ENST00000566824 LRRC10BA6NIK2 292 aa20.78■□□□□ 0.92
CLN3-225ENST00000566824 MOSPD3O75425 235 aa20.78■□□□□ 0.92
CLN3-225ENST00000566824 PTPN2P17706 415 aa20.78■□□□□ 0.92
CLN3-225ENST00000566824 CDK11BP21127 795 aaKnown RBP20.78■□□□□ 0.92
CLN3-225ENST00000566824 TBXAS1P24557 533 aaPredicted RBP20.78■□□□□ 0.92
CLN3-225ENST00000566824 ADORA2BP29275 332 aa20.78■□□□□ 0.92
CLN3-225ENST00000566824 MAGEA11P43364 429 aa20.78■□□□□ 0.92
CLN3-225ENST00000566824 EPHB3P54753 998 aa20.78■□□□□ 0.92
CLN3-225ENST00000566824 GCNT1Q02742 428 aa20.78■□□□□ 0.92
CLN3-225ENST00000566824 PTPN21Q16825 1174 aa20.78■□□□□ 0.92
CLN3-225ENST00000566824 DNAJB7Q7Z6W7 309 aaPredicted RBP20.78■□□□□ 0.92
CLN3-225ENST00000566824 TMEM176AQ96HP8 235 aa20.78■□□□□ 0.92
CLN3-225ENST00000566824 NECTIN4Q96NY8 510 aa20.78■□□□□ 0.92
CLN3-225ENST00000566824 MYADMQ96S97 322 aa20.78■□□□□ 0.92
CLN3-225ENST00000566824 MED10Q9BTT4 135 aa20.78■□□□□ 0.92
CLN3-225ENST00000566824 PCDHB4Q9Y5E5 795 aa20.78■□□□□ 0.92
CLN3-225ENST00000566824 DENND4CQ5VZ89 1909 aa20.78■□□□□ 0.92
CLN3-225ENST00000566824 PATJQ8NI35 1801 aa20.78■□□□□ 0.92
CLN3-225ENST00000566824 BEST1O76090 585 aa20.78■□□□□ 0.92
CLN3-225ENST00000566824 HMGA1P17096 107 aaKnown RBP20.78■□□□□ 0.92
CLN3-225ENST00000566824 GJA1P17302 382 aa20.78■□□□□ 0.92
CLN3-225ENST00000566824 PABPC1LQ4VXU2 614 aaKnown RBP20.78■□□□□ 0.92
CLN3-225ENST00000566824 PRSS36Q5K4E3 855 aa20.78■□□□□ 0.92
CLN3-225ENST00000566824 PPP1R26Q5T8A7 1209 aaPredicted RBP20.78■□□□□ 0.92
CLN3-225ENST00000566824 LRSAM1Q6UWE0 723 aa20.78■□□□□ 0.92
CLN3-225ENST00000566824 ADHFE1Q8IWW8 467 aa20.78■□□□□ 0.92
CLN3-225ENST00000566824 ST13P5Q8NFI4 369 aaPredicted RBP20.78■□□□□ 0.92
CLN3-225ENST00000566824 FAM200AQ8TCP9 573 aa20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms