RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 FUBP3Q96I24 572 aaKnown RBP eCLIP22.18■■□□□ 1.14
CLN3-219ENST00000565778 MRPL45Q9BRJ2 306 aaKnown RBP22.18■■□□□ 1.14
CLN3-219ENST00000565778 GZF1Q9H116 711 aaPredicted RBP22.18■■□□□ 1.14
CLN3-219ENST00000565778 GOLPH3LQ9H4A5 285 aa22.18■■□□□ 1.14
CLN3-219ENST00000565778 NXF1Q9UBU9 619 aaKnown RBP22.18■■□□□ 1.14
CLN3-219ENST00000565778 PIAS3Q9Y6X2 628 aa22.18■■□□□ 1.14
CLN3-219ENST00000565778 SLC38A8A6NNN8 435 aa22.17■■□□□ 1.14
CLN3-219ENST00000565778 CALUO43852 315 aaPredicted RBP22.17■■□□□ 1.14
CLN3-219ENST00000565778 CLSTN1O94985 981 aa22.17■■□□□ 1.14
CLN3-219ENST00000565778 NR3C1P04150 777 aa22.17■■□□□ 1.14
CLN3-219ENST00000565778 WEE1P30291 646 aa22.17■■□□□ 1.14
CLN3-219ENST00000565778 ATICP31939 592 aa22.17■■□□□ 1.14
CLN3-219ENST00000565778 KPNA1P52294 538 aaPredicted RBP22.17■■□□□ 1.14
CLN3-219ENST00000565778 AP3M2P53677 418 aa22.17■■□□□ 1.14
CLN3-219ENST00000565778 CYP27A1Q02318 531 aa22.17■■□□□ 1.14
CLN3-219ENST00000565778 FCHO2Q0JRZ9 810 aa22.17■■□□□ 1.14
CLN3-219ENST00000565778 CEP135Q66GS9 1140 aa22.17■■□□□ 1.14
CLN3-219ENST00000565778 TMEM150AQ86TG1 271 aa22.17■■□□□ 1.14
CLN3-219ENST00000565778 MAB21L3Q8N8X9 362 aa22.17■■□□□ 1.14
CLN3-219ENST00000565778 PLEKHO2Q8TD55 490 aa22.17■■□□□ 1.14
CLN3-219ENST00000565778 MRPS31Q92665 395 aaKnown RBP22.17■■□□□ 1.14
CLN3-219ENST00000565778 SYAP1Q96A49 352 aaPredicted RBP22.17■■□□□ 1.14
CLN3-219ENST00000565778 LRRC3BQ96PB8 259 aa22.17■■□□□ 1.14
CLN3-219ENST00000565778 SMG9Q9H0W8 520 aaKnown RBP22.17■■□□□ 1.14
CLN3-219ENST00000565778 THG1LQ9NWX6 298 aaKnown RBP22.17■■□□□ 1.14
CLN3-219ENST00000565778 OBP2AQ9NY56 170 aa22.17■■□□□ 1.14
CLN3-219ENST00000565778 UXTQ9UBK9 157 aaPredicted RBP22.17■■□□□ 1.14
CLN3-219ENST00000565778 ZMYM5Q9UJ78 669 aa22.17■■□□□ 1.14
CLN3-219ENST00000565778 LRRIQ3A6PVS8 624 aaPredicted RBP22.16■■□□□ 1.14
CLN3-219ENST00000565778 LAMTOR5O43504 91 aa22.16■■□□□ 1.14
CLN3-219ENST00000565778 TACC1O75410 805 aa22.16■■□□□ 1.14
CLN3-219ENST00000565778 RHOBTB3O94955 611 aa22.16■■□□□ 1.14
CLN3-219ENST00000565778 BDNFP23560 247 aa22.16■■□□□ 1.14
CLN3-219ENST00000565778 AVPR1AP37288 418 aa22.16■■□□□ 1.14
CLN3-219ENST00000565778 MAGEA9P43362 315 aa22.16■■□□□ 1.14
CLN3-219ENST00000565778 DPYDQ12882 1025 aa22.16■■□□□ 1.14
CLN3-219ENST00000565778 ARHGAP29Q52LW3 1261 aa22.16■■□□□ 1.14
CLN3-219ENST00000565778 TXNDC8Q6A555 127 aa22.16■■□□□ 1.14
CLN3-219ENST00000565778 CMTM8Q8IZV2 173 aa22.16■■□□□ 1.14
CLN3-219ENST00000565778 CELF5Q8N6W0 485 aaKnown RBP22.16■■□□□ 1.14
CLN3-219ENST00000565778 BPIFB1Q8TDL5 484 aa22.16■■□□□ 1.14
CLN3-219ENST00000565778 NKD2Q969F2 451 aaPredicted RBP22.16■■□□□ 1.14
CLN3-219ENST00000565778 CLDN23Q96B33 292 aa22.16■■□□□ 1.14
CLN3-219ENST00000565778 CCDC34Q96HJ3 373 aa22.16■■□□□ 1.14
CLN3-219ENST00000565778 CRTAC1Q9NQ79 661 aa22.16■■□□□ 1.14
CLN3-219ENST00000565778 MAPK8IP1Q9UQF2 711 aa22.16■■□□□ 1.14
CLN3-219ENST00000565778 FRMD4BQ9Y2L6 1034 aa22.16■■□□□ 1.14
CLN3-219ENST00000565778 COL4A3Q01955 1670 aa22.16■■□□□ 1.14
CLN3-219ENST00000565778 PIEZO1Q92508 2521 aa22.15■■□□□ 1.14
CLN3-219ENST00000565778 GOLGA6L4A6NEF3 574 aa22.15■■□□□ 1.14
CLN3-219ENST00000565778 SHISA7A6NL88 538 aa22.15■■□□□ 1.14
CLN3-219ENST00000565778 PRAMEF12O95522 483 aa22.15■■□□□ 1.14
CLN3-219ENST00000565778 STAU1O95793 577 aaKnown RBP22.15■■□□□ 1.14
CLN3-219ENST00000565778 C4BPAP04003 597 aaKnown RBP22.15■■□□□ 1.14
CLN3-219ENST00000565778 SP9P0CG40 484 aa22.15■■□□□ 1.14
CLN3-219ENST00000565778 CCNE1P24864 410 aa22.15■■□□□ 1.14
CLN3-219ENST00000565778 DDX6P26196 483 aaKnown RBP eCLIP22.15■■□□□ 1.14
CLN3-219ENST00000565778 GRIK1P39086 918 aa22.15■■□□□ 1.14
CLN3-219ENST00000565778 MAGEA11P43364 429 aa22.15■■□□□ 1.14
CLN3-219ENST00000565778 NUCB2P80303 420 aa22.15■■□□□ 1.14
CLN3-219ENST00000565778 TDRD10Q5VZ19 366 aaKnown RBP22.15■■□□□ 1.14
CLN3-219ENST00000565778 ASCL5Q7RTU5 278 aa22.15■■□□□ 1.14
CLN3-219ENST00000565778 TTC8Q8TAM2 541 aa22.15■■□□□ 1.14
CLN3-219ENST00000565778 MYCBPAPQ8TBZ2 947 aa22.15■■□□□ 1.14
CLN3-219ENST00000565778 TMEM174Q8WUU8 243 aa22.15■■□□□ 1.14
CLN3-219ENST00000565778 MYLPFQ96A32 169 aa22.15■■□□□ 1.14
CLN3-219ENST00000565778 ZFYVE19Q96K21 471 aa22.15■■□□□ 1.14
CLN3-219ENST00000565778 A8MXQ7 604 aa22.14■■□□□ 1.13
CLN3-219ENST00000565778 ARNTLO00327 626 aa22.14■■□□□ 1.13
CLN3-219ENST00000565778 NOL4O94818 638 aa22.14■■□□□ 1.13
CLN3-219ENST00000565778 PTPN1P18031 435 aaKnown RBP22.14■■□□□ 1.13
CLN3-219ENST00000565778 RPS9P46781 194 aaKnown RBP22.14■■□□□ 1.13
CLN3-219ENST00000565778 DLG4P78352 724 aa22.14■■□□□ 1.13
CLN3-219ENST00000565778 CLDN10P78369 228 aa22.14■■□□□ 1.13
CLN3-219ENST00000565778 FZD5Q13467 585 aa22.14■■□□□ 1.13
CLN3-219ENST00000565778 NCOA4Q13772 614 aa22.14■■□□□ 1.13
CLN3-219ENST00000565778 MDH1BQ5I0G3 518 aa22.14■■□□□ 1.13
CLN3-219ENST00000565778 VSTM1Q6UX27 236 aa22.14■■□□□ 1.13
CLN3-219ENST00000565778 MON1AQ86VX9 555 aa22.14■■□□□ 1.13
CLN3-219ENST00000565778 TRMT2BQ96GJ1 504 aaKnown RBP22.14■■□□□ 1.13
CLN3-219ENST00000565778 MYRFLQ96LU7 910 aa22.14■■□□□ 1.13
CLN3-219ENST00000565778 XYLT2Q9H1B5 865 aa22.14■■□□□ 1.13
CLN3-219ENST00000565778 C8orf33Q9H7E9 229 aaPredicted RBP22.14■■□□□ 1.13
CLN3-219ENST00000565778 LMAN1LQ9HAT1 526 aa22.14■■□□□ 1.13
CLN3-219ENST00000565778 TDP1Q9NUW8 608 aa22.14■■□□□ 1.13
CLN3-219ENST00000565778 TRAF3IP3Q9Y228 551 aa22.14■■□□□ 1.13
CLN3-219ENST00000565778 CACNA1HO95180 2353 aa22.14■■□□□ 1.13
CLN3-219ENST00000565778 SOBPA7XYQ1 873 aa22.13■■□□□ 1.13
CLN3-219ENST00000565778 ANXA13P27216 316 aa22.13■■□□□ 1.13
CLN3-219ENST00000565778 MLLT6P55198 1093 aaPredicted RBP22.13■■□□□ 1.13
CLN3-219ENST00000565778 ZNF699Q32M78 642 aa22.13■■□□□ 1.13
CLN3-219ENST00000565778 ZNF667Q5HYK9 610 aa22.13■■□□□ 1.13
CLN3-219ENST00000565778 TMC2Q8TDI7 906 aa22.13■■□□□ 1.13
CLN3-219ENST00000565778 PCED1BQ96HM7 432 aa22.13■■□□□ 1.13
CLN3-219ENST00000565778 GKN1Q9NS71 199 aa22.13■■□□□ 1.13
CLN3-219ENST00000565778 GTSE1Q9NYZ3 720 aa22.13■■□□□ 1.13
CLN3-219ENST00000565778 R4GN57 208 aa22.13■■□□□ 1.13
CLN3-219ENST00000565778 PRR23AA6NEV1 266 aa22.12■■□□□ 1.13
CLN3-219ENST00000565778 CDH8P55286 799 aa22.12■■□□□ 1.13
CLN3-219ENST00000565778 PLCB2Q00722 1185 aa22.12■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms