RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 HCRTO43612 131 aa17.39■□□□□ 0.37
SNX1-213ENST00000561026 SATB1Q01826 763 aa17.39■□□□□ 0.37
SNX1-213ENST00000561026 EHHADHQ08426 723 aa17.39■□□□□ 0.37
SNX1-213ENST00000561026 SNRNP35Q16560 246 aaKnown RBP17.39■□□□□ 0.37
SNX1-213ENST00000561026 CCDC142Q17RM4 750 aa17.39■□□□□ 0.37
SNX1-213ENST00000561026 ITPRIPL2Q3MIP1 535 aa17.39■□□□□ 0.37
SNX1-213ENST00000561026 FOXD4L6Q3SYB3 417 aaPredicted RBP17.39■□□□□ 0.37
SNX1-213ENST00000561026 DGKKQ5KSL6 1271 aa17.39■□□□□ 0.37
SNX1-213ENST00000561026 FAM171BQ6P995 826 aa17.39■□□□□ 0.37
SNX1-213ENST00000561026 FOXD4L3Q6VB84 417 aaPredicted RBP17.39■□□□□ 0.37
SNX1-213ENST00000561026 MON1AQ86VX9 555 aa17.39■□□□□ 0.37
SNX1-213ENST00000561026 SPATA2LQ8IUW3 424 aaPredicted RBP17.39■□□□□ 0.37
SNX1-213ENST00000561026 WDR49Q8IV35 697 aa17.39■□□□□ 0.37
SNX1-213ENST00000561026 MRPS31Q92665 395 aaKnown RBP17.39■□□□□ 0.37
SNX1-213ENST00000561026 USP13Q92995 863 aaPredicted RBP17.39■□□□□ 0.37
SNX1-213ENST00000561026 RMDN1Q96DB5 314 aa17.39■□□□□ 0.37
SNX1-213ENST00000561026 TRMT2BQ96GJ1 504 aaKnown RBP17.39■□□□□ 0.37
SNX1-213ENST00000561026 FUBP3Q96I24 572 aaKnown RBP eCLIP17.39■□□□□ 0.37
SNX1-213ENST00000561026 FAM83CQ9BQN1 747 aa17.39■□□□□ 0.37
SNX1-213ENST00000561026 GKN1Q9NS71 199 aa17.39■□□□□ 0.37
SNX1-213ENST00000561026 TDP1Q9NUW8 608 aa17.39■□□□□ 0.37
SNX1-213ENST00000561026 NCDNQ9UBB6 729 aa17.39■□□□□ 0.37
SNX1-213ENST00000561026 UXTQ9UBK9 157 aaPredicted RBP17.39■□□□□ 0.37
SNX1-213ENST00000561026 SMG5Q9UPR3 1016 aaKnown RBP17.39■□□□□ 0.37
SNX1-213ENST00000561026 CCL26Q9Y258 94 aa17.39■□□□□ 0.37
SNX1-213ENST00000561026 CEP250Q9BV73 2442 aa17.39■□□□□ 0.37
SNX1-213ENST00000561026 NOL4O94818 638 aa17.38■□□□□ 0.37
SNX1-213ENST00000561026 F13A1P00488 732 aa17.38■□□□□ 0.37
SNX1-213ENST00000561026 LMO2P25791 158 aa17.38■□□□□ 0.37
SNX1-213ENST00000561026 SNRPFP62306 86 aaKnown RBP17.38■□□□□ 0.37
SNX1-213ENST00000561026 PON2Q15165 354 aa17.38■□□□□ 0.37
SNX1-213ENST00000561026 Q6ZS52 159 aa17.38■□□□□ 0.37
SNX1-213ENST00000561026 UNC13DQ70J99 1090 aa17.38■□□□□ 0.37
SNX1-213ENST00000561026 HSCBQ8IWL3 235 aa17.38■□□□□ 0.37
SNX1-213ENST00000561026 RDH13Q8NBN7 331 aa17.38■□□□□ 0.37
SNX1-213ENST00000561026 SCFD1Q8WVM8 642 aa17.38■□□□□ 0.37
SNX1-213ENST00000561026 KBTBD7Q8WVZ9 684 aa17.38■□□□□ 0.37
SNX1-213ENST00000561026 PCDHA7Q9UN72 937 aa17.38■□□□□ 0.37
SNX1-213ENST00000561026 CACNA1AO00555 2505 aa17.37■□□□□ 0.37
SNX1-213ENST00000561026 ATP2C2O75185 946 aa17.37■□□□□ 0.37
SNX1-213ENST00000561026 HSP90AA1P07900 732 aaKnown RBP17.37■□□□□ 0.37
SNX1-213ENST00000561026 CASP1P29466 404 aa17.37■□□□□ 0.37
SNX1-213ENST00000561026 MAGEA11P43364 429 aa17.37■□□□□ 0.37
SNX1-213ENST00000561026 ME1P48163 572 aa17.37■□□□□ 0.37
SNX1-213ENST00000561026 CCINQ13939 588 aa17.37■□□□□ 0.37
SNX1-213ENST00000561026 ATL3Q6DD88 541 aa17.37■□□□□ 0.37
SNX1-213ENST00000561026 TRAPPC11Q7Z392 1133 aa17.37■□□□□ 0.37
SNX1-213ENST00000561026 NELFCDQ8IXH7 590 aa17.37■□□□□ 0.37
SNX1-213ENST00000561026 SYNPOQ8N3V7 929 aa17.37■□□□□ 0.37
SNX1-213ENST00000561026 SECISBP2LQ93073 1101 aaKnown RBP17.37■□□□□ 0.37
SNX1-213ENST00000561026 SYT15Q9BQS2 421 aa17.37■□□□□ 0.37
SNX1-213ENST00000561026 BLZF1Q9H2G9 400 aa17.37■□□□□ 0.37
SNX1-213ENST00000561026 KIF9Q9HAQ2 790 aa17.37■□□□□ 0.37
SNX1-213ENST00000561026 FAM13BQ9NYF5 915 aa17.37■□□□□ 0.37
SNX1-213ENST00000561026 CDH9Q9ULB4 789 aa17.37■□□□□ 0.37
SNX1-213ENST00000561026 UBE4BO95155 1302 aa17.36■□□□□ 0.37
SNX1-213ENST00000561026 PVALEFA0A1B0GWK0 134 aa17.36■□□□□ 0.37
SNX1-213ENST00000561026 CLIC2O15247 247 aa17.36■□□□□ 0.37
SNX1-213ENST00000561026 TADA3O75528 432 aa17.36■□□□□ 0.37
SNX1-213ENST00000561026 PAPSS2O95340 614 aaPredicted RBP17.36■□□□□ 0.37
SNX1-213ENST00000561026 CST3P01034 146 aaPredicted RBP17.36■□□□□ 0.37
SNX1-213ENST00000561026 DLATP10515 647 aaKnown RBP17.36■□□□□ 0.37
SNX1-213ENST00000561026 WARSP23381 471 aaKnown RBP17.36■□□□□ 0.37
SNX1-213ENST00000561026 RUNX3Q13761 415 aa17.36■□□□□ 0.37
SNX1-213ENST00000561026 ZNF268Q14587 947 aaPredicted RBP17.36■□□□□ 0.37
SNX1-213ENST00000561026 PSMD6Q15008 389 aa17.36■□□□□ 0.37
SNX1-213ENST00000561026 RESP18Q5W5W9 173 aa17.36■□□□□ 0.37
SNX1-213ENST00000561026 C4orf50Q6ZRC1 276 aa17.36■□□□□ 0.37
SNX1-213ENST00000561026 HS2ST1Q7LGA3 356 aa17.36■□□□□ 0.37
SNX1-213ENST00000561026 SCN4BQ8IWT1 228 aa17.36■□□□□ 0.37
SNX1-213ENST00000561026 GPR161Q8N6U8 529 aaKnown RBP17.36■□□□□ 0.37
SNX1-213ENST00000561026 XXYLT1Q8NBI6 393 aa17.36■□□□□ 0.37
SNX1-213ENST00000561026 CCDC127Q96BQ5 260 aa17.36■□□□□ 0.37
SNX1-213ENST00000561026 FNBP1Q96RU3 617 aa17.36■□□□□ 0.37
SNX1-213ENST00000561026 MMS19Q96T76 1030 aa17.36■□□□□ 0.37
SNX1-213ENST00000561026 EBF3Q9H4W6 596 aa17.36■□□□□ 0.37
SNX1-213ENST00000561026 CRTAC1Q9NQ79 661 aa17.36■□□□□ 0.37
SNX1-213ENST00000561026 HPS4Q9NQG7 708 aa17.36■□□□□ 0.37
SNX1-213ENST00000561026 MAGEC2Q9UBF1 373 aaPredicted RBP17.36■□□□□ 0.37
SNX1-213ENST00000561026 OTOL1A6NHN0 477 aaPredicted RBP17.35■□□□□ 0.37
SNX1-213ENST00000561026 K7ESF4 209 aa17.35■□□□□ 0.37
SNX1-213ENST00000561026 PDGFRBP09619 1106 aa17.35■□□□□ 0.37
SNX1-213ENST00000561026 TNNI1P19237 187 aa17.35■□□□□ 0.37
SNX1-213ENST00000561026 CYP2J2P51589 502 aa17.35■□□□□ 0.37
SNX1-213ENST00000561026 PSMC1P62191 440 aaKnown RBP17.35■□□□□ 0.37
SNX1-213ENST00000561026 CYP24A1Q07973 514 aa17.35■□□□□ 0.37
SNX1-213ENST00000561026 PKP1Q13835 747 aa17.35■□□□□ 0.37
SNX1-213ENST00000561026 MAPRE1Q15691 268 aaKnown RBP17.35■□□□□ 0.37
SNX1-213ENST00000561026 BMT2Q1RMZ1 405 aa17.35■□□□□ 0.37
SNX1-213ENST00000561026 TRIM68Q6AZZ1 485 aa17.35■□□□□ 0.37
SNX1-213ENST00000561026 CC2D1AQ6P1N0 951 aaPredicted RBP17.35■□□□□ 0.37
SNX1-213ENST00000561026 RIN3Q8TB24 985 aa17.35■□□□□ 0.37
SNX1-213ENST00000561026 CGRRF1Q99675 332 aa17.35■□□□□ 0.37
SNX1-213ENST00000561026 SLC39A2Q9NP94 309 aa17.35■□□□□ 0.37
SNX1-213ENST00000561026 CFAP45Q9UL16 551 aa17.35■□□□□ 0.37
SNX1-213ENST00000561026 DENND4CQ5VZ89 1909 aa17.34■□□□□ 0.37
SNX1-213ENST00000561026 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.34■□□□□ 0.37
SNX1-213ENST00000561026 FAM163BP0C2L3 166 aa17.34■□□□□ 0.37
SNX1-213ENST00000561026 AFMP43652 599 aa17.34■□□□□ 0.37
SNX1-213ENST00000561026 FAM160A1Q05DH4 1040 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms