RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 STAP1Q9ULZ2 295 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 MAD1L1Q9Y6D9 718 aa5.74□□□□□ -1.49
VPS13C-209ENST00000560637 TYW5A2RUC4 315 aaKnown RBP5.73□□□□□ -1.49
VPS13C-209ENST00000560637 MYBPHLA2RUH7 354 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 PRR23AA6NEV1 266 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 DFFAO00273 331 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 ADAMTS4O75173 837 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 CALB1P05937 261 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 KRT10P13645 584 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 AXLP30530 894 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 GBP2P32456 591 aaPredicted RBP5.73□□□□□ -1.49
VPS13C-209ENST00000560637 KCNJ1P48048 391 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 CAP1Q01518 475 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 GUCY2DQ02846 1103 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 DEUP1Q05D60 604 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 MCL1Q07820 350 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 PPP1R26Q5T8A7 1209 aaPredicted RBP5.73□□□□□ -1.49
VPS13C-209ENST00000560637 TMC5Q6UXY8 1006 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 SERINC5Q86VE9 423 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 ECHDC2Q86YB7 292 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 MAP7D3Q8IWC1 876 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 ZNF516Q92618 1163 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 PPP2R3CQ969Q6 453 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 HHIPL1Q96JK4 782 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 KREMEN1Q96MU8 473 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 CEP41Q9BYV8 373 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 ZNF518BQ9C0D4 1074 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 CXCL16Q9H2A7 254 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 APOBEC3GQ9HC16 384 aaKnown RBP5.73□□□□□ -1.49
VPS13C-209ENST00000560637 TBC1D13Q9NVG8 400 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 PLK2Q9NYY3 685 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 KANSL3Q9P2N6 904 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 SLC12A6Q9UHW9 1150 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 AJAP1Q9UKB5 411 aaPredicted RBP5.73□□□□□ -1.49
VPS13C-209ENST00000560637 ITGA11Q9UKX5 1188 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 STRIP2Q9ULQ0 834 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 BARX2Q9UMQ3 279 aaPredicted RBP5.73□□□□□ -1.49
VPS13C-209ENST00000560637 CAPN6Q9Y6Q1 641 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 RP1L1Q8IWN7 2480 aaPredicted RBP5.73□□□□□ -1.49
VPS13C-209ENST00000560637 THSD7BQ9C0I4 1608 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 SLC12A8A0AV02 714 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 MICAL2O94851 1124 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 HSPA8P11142 646 aaKnown RBP5.73□□□□□ -1.49
VPS13C-209ENST00000560637 PTPN1P18031 435 aaKnown RBP5.73□□□□□ -1.49
VPS13C-209ENST00000560637 COMTP21964 271 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 TKTP29401 623 aaKnown RBP5.73□□□□□ -1.49
VPS13C-209ENST00000560637 ETFBP38117 255 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 CDK17Q00537 523 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 C15orf59Q2T9L4 293 aaPredicted RBP5.73□□□□□ -1.49
VPS13C-209ENST00000560637 C9orf57Q5W0N0 161 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 TFAP2DQ7Z6R9 452 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 CHSY1Q86X52 802 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 CTAGE3PQ8IX95 158 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 GSPT2Q8IYD1 628 aaKnown RBP5.73□□□□□ -1.49
VPS13C-209ENST00000560637 PDCL2Q8N4E4 241 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 CEP112Q8N8E3 955 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 ING5Q8WYH8 240 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 PABPC5Q96DU9 382 aaKnown RBP5.73□□□□□ -1.49
VPS13C-209ENST00000560637 KCNK16Q96T55 309 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 FTHL17Q9BXU8 183 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 ULBP1Q9BZM6 244 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 TRIM7Q9C029 511 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 RABEP2Q9H5N1 569 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 MRPL17Q9NRX2 175 aaKnown RBP5.73□□□□□ -1.49
VPS13C-209ENST00000560637 FAM8A1Q9UBU6 413 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 TJP2Q9UDY2 1190 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 MSRAQ9UJ68 235 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 L1RE1Q9UN81 338 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 MYH8P13535 1937 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 A0A1B0GUL6 1792 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 DDX3XO00571 662 aaKnown RBP eCLIP5.73□□□□□ -1.49
VPS13C-209ENST00000560637 MBL2P11226 248 aaPredicted RBP5.73□□□□□ -1.49
VPS13C-209ENST00000560637 LILRA4P59901 499 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 DEFB103AP81534 67 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 CDR2Q01850 454 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 PSMD5Q16401 504 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 LRRC26Q2I0M4 334 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 TIGD5Q53EQ6 642 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 MARCH8Q5T0T0 291 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 TPGS1Q6ZTW0 290 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 PIGZQ86VD9 579 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 ELOA2Q8IYF1 753 aaPredicted RBP5.73□□□□□ -1.49
VPS13C-209ENST00000560637 RSPH1Q8WYR4 309 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 MYLPFQ96A32 169 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 ARHGEF26Q96DR7 871 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 FAM81BQ96LP2 452 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 RYDENQ9NUL5 291 aaKnown RBP5.73□□□□□ -1.49
VPS13C-209ENST00000560637 MIOSQ9NXC5 875 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 IKBKGQ9Y6K9 419 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 SCINQ9Y6U3 715 aa5.73□□□□□ -1.49
VPS13C-209ENST00000560637 SF3B1O75533 1304 aaKnown RBP eCLIP5.73□□□□□ -1.499e-6■■■■■ 68.9
VPS13C-209ENST00000560637 LOC102724159A0A0B4J2E5 919 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 NRP1O14786 923 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 MGEA5O60502 916 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 RTN2O75298 545 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 APOEP02649 317 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 PLTPP55058 493 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 RWDD2BP57060 319 aa5.72□□□□□ -1.49
VPS13C-209ENST00000560637 SOX4Q06945 474 aaPredicted RBP5.72□□□□□ -1.49
VPS13C-209ENST00000560637 AP1B1Q10567 949 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms