RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 KRT4P19013 534 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 PSMD6Q15008 389 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 WDR72Q3MJ13 1102 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 KCNT1Q5JUK3 1230 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 LVRNQ6Q4G3 990 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 GET4Q7L5D6 327 aaPredicted RBP11.89□□□□□ -0.51
CUX1-218ENST00000560541 DENND1AQ8TEH3 1009 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 ATP6V0A1Q93050 837 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 DTNBP1Q96EV8 351 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 RPAP3Q9H6T3 665 aaPredicted RBP11.89□□□□□ -0.51
CUX1-218ENST00000560541 NPHS2Q9NP85 383 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 RNF146Q9NTX7 359 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 TXLNGQ9NUQ3 528 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 ARHGAP28Q9P2N2 729 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 DCTN4Q9UJW0 460 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 ACTL7BQ9Y614 415 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 SCINQ9Y6U3 715 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 DOCK5Q9H7D0 1870 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 LSM1O15116 133 aaKnown RBP11.89□□□□□ -0.51
CUX1-218ENST00000560541 ZBED4O75132 1171 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 TJP3O95049 919 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 EDN1P05305 212 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 SP100P23497 879 aaPredicted RBP11.89□□□□□ -0.51
CUX1-218ENST00000560541 EPHB2P29323 1055 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 CETN2P41208 172 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 IGBP1P78318 339 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 ALLCQ8N6M5 410 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 ZNF606Q8WXB4 792 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 GRAMD1AQ96CP6 724 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 MSTO1Q9BUK6 570 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 ATXN10Q9UBB4 475 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 FBXO40Q9UH90 709 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 ZMYND8Q9ULU4 1186 aaPredicted RBP11.89□□□□□ -0.51
CUX1-218ENST00000560541 STARD13Q9Y3M8 1113 aa11.89□□□□□ -0.51
CUX1-218ENST00000560541 RGS20O76081 388 aa11.88□□□□□ -0.51
CUX1-218ENST00000560541 NPTXRO95502 500 aa11.88□□□□□ -0.51
CUX1-218ENST00000560541 HNRNPCP07910 306 aaKnown RBP eCLIP11.88□□□□□ -0.517e-8■■□□□ 11.8
CUX1-218ENST00000560541 ABHD2P08910 425 aa11.88□□□□□ -0.51
CUX1-218ENST00000560541 NRLP54845 237 aa11.88□□□□□ -0.51
CUX1-218ENST00000560541 GDF10P55107 478 aa11.88□□□□□ -0.51
CUX1-218ENST00000560541 ACVR2BQ13705 512 aa11.88□□□□□ -0.51
CUX1-218ENST00000560541 MOGSQ13724 837 aa11.88□□□□□ -0.51
CUX1-218ENST00000560541 TFDP1Q14186 410 aa11.88□□□□□ -0.51
CUX1-218ENST00000560541 EAPPQ56P03 285 aaPredicted RBP11.88□□□□□ -0.51
CUX1-218ENST00000560541 ANKRD22Q5VYY1 191 aa11.88□□□□□ -0.51
CUX1-218ENST00000560541 SCARA5Q6ZMJ2 495 aa11.88□□□□□ -0.51
CUX1-218ENST00000560541 SPOCD1Q6ZMY3 1216 aa11.88□□□□□ -0.51
CUX1-218ENST00000560541 NANOGNBQ7Z5D8 188 aa11.88□□□□□ -0.51
CUX1-218ENST00000560541 PHF13Q86YI8 300 aaPredicted RBP11.88□□□□□ -0.51
CUX1-218ENST00000560541 RELL1Q8IUW5 271 aa11.88□□□□□ -0.51
CUX1-218ENST00000560541 MCPH1Q8NEM0 835 aa11.88□□□□□ -0.51
CUX1-218ENST00000560541 GMLQ99445 158 aa11.88□□□□□ -0.51
CUX1-218ENST00000560541 JPH1Q9HDC5 661 aaPredicted RBP11.88□□□□□ -0.51
CUX1-218ENST00000560541 IP6K2Q9UHH9 426 aa11.88□□□□□ -0.51
CUX1-218ENST00000560541 TMEM98Q9Y2Y6 226 aa11.88□□□□□ -0.51
CUX1-218ENST00000560541 ASB3Q9Y575 518 aa11.88□□□□□ -0.51
CUX1-218ENST00000560541 E2F6O75461 281 aa11.88□□□□□ -0.51
CUX1-218ENST00000560541 GM2AP17900 193 aa11.88□□□□□ -0.51
CUX1-218ENST00000560541 ADRA1DP25100 572 aa11.88□□□□□ -0.51
CUX1-218ENST00000560541 MCCD1P59942 119 aaPredicted RBP11.88□□□□□ -0.51
CUX1-218ENST00000560541 EMC2Q15006 297 aa11.88□□□□□ -0.51
CUX1-218ENST00000560541 DNAJC24Q6P3W2 148 aa11.88□□□□□ -0.51
CUX1-218ENST00000560541 ASAP3Q8TDY4 903 aa11.88□□□□□ -0.51
CUX1-218ENST00000560541 DHRS1Q96LJ7 313 aa11.88□□□□□ -0.51
CUX1-218ENST00000560541 CORO1BQ9BR76 489 aa11.88□□□□□ -0.51
CUX1-218ENST00000560541 C17orf75Q9HAS0 396 aa11.88□□□□□ -0.51
CUX1-218ENST00000560541 UBN1Q9NPG3 1134 aa11.88□□□□□ -0.51
CUX1-218ENST00000560541 NUMBLQ9Y6R0 609 aa11.88□□□□□ -0.51
CUX1-218ENST00000560541 WNT10BO00744 389 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 TBC1D12O60347 775 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 EDF1O60869 148 aaKnown RBP11.87□□□□□ -0.51
CUX1-218ENST00000560541 CST3P01034 146 aaPredicted RBP11.87□□□□□ -0.51
CUX1-218ENST00000560541 KCNA2P16389 499 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 CCND2P30279 289 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 ACTR2P61160 394 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 NCOA4Q13772 614 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 PDK4Q16654 411 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 MSS51Q4VC12 460 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 PABPC1LQ4VXU2 614 aaKnown RBP11.87□□□□□ -0.51
CUX1-218ENST00000560541 TAF1BQ53T94 588 aaPredicted RBP11.87□□□□□ -0.51
CUX1-218ENST00000560541 OTOAQ7RTW8 1153 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 VSIG10LQ86VR7 867 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 RCOR2Q8IZ40 523 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 RIBC1Q8N443 379 aaPredicted RBP11.87□□□□□ -0.51
CUX1-218ENST00000560541 UCMAQ8WVF2 138 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 RAB3IPQ96QF0 476 aaPredicted RBP11.87□□□□□ -0.51
CUX1-218ENST00000560541 FZD1Q9UP38 647 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 TMEM191CA6NGB0 347 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 TTLL13PA6NNM8 815 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 NDUFB5O43674 189 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 PSAPP07602 524 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 TMEM191BP0C7N4 346 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 T-ENOLP0DO92 83 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 ETS2P15036 469 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 MMP8P22894 467 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 GLRA2P23416 452 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 CCNFP41002 786 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 SERPINB4P48594 390 aa11.87□□□□□ -0.51
CUX1-218ENST00000560541 YARSP54577 528 aaKnown RBP11.87□□□□□ -0.51
CUX1-218ENST00000560541 GPX6P59796 221 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms