RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 TTC9BQ8N6N2 239 aa13.84□□□□□ -0.19
NEDD8-208ENST00000560427 TDRD5Q8NAT2 981 aaKnown RBP13.84□□□□□ -0.19
NEDD8-208ENST00000560427 INTS2Q9H0H0 1204 aaKnown RBP13.84□□□□□ -0.19
NEDD8-208ENST00000560427 DPEP3Q9H4B8 488 aa13.84□□□□□ -0.19
NEDD8-208ENST00000560427 CEP72Q9P209 647 aa13.84□□□□□ -0.19
NEDD8-208ENST00000560427 DNMT3BQ9UBC3 853 aaKnown RBP13.84□□□□□ -0.19
NEDD8-208ENST00000560427 CDH22Q9UJ99 828 aa13.84□□□□□ -0.19
NEDD8-208ENST00000560427 SLC27A5Q9Y2P5 690 aa13.84□□□□□ -0.19
NEDD8-208ENST00000560427 CSH1P0DML2 217 aa13.83□□□□□ -0.2
NEDD8-208ENST00000560427 CSH2P0DML3 217 aa13.83□□□□□ -0.2
NEDD8-208ENST00000560427 ZNF18P17022 549 aa13.83□□□□□ -0.2
NEDD8-208ENST00000560427 ATF6P18850 670 aa13.83□□□□□ -0.2
NEDD8-208ENST00000560427 CD58P19256 250 aa13.83□□□□□ -0.2
NEDD8-208ENST00000560427 ANXA13P27216 316 aa13.83□□□□□ -0.2
NEDD8-208ENST00000560427 ZNF165P49910 485 aa13.83□□□□□ -0.2
NEDD8-208ENST00000560427 NCAPHQ15003 741 aa13.83□□□□□ -0.2
NEDD8-208ENST00000560427 EXOC3L4Q17RC7 722 aa13.83□□□□□ -0.2
NEDD8-208ENST00000560427 ZSCAN23Q3MJ62 389 aa13.83□□□□□ -0.2
NEDD8-208ENST00000560427 CYP4A22Q5TCH4 519 aa13.83□□□□□ -0.2
NEDD8-208ENST00000560427 TRIM65Q6PJ69 517 aa13.83□□□□□ -0.2
NEDD8-208ENST00000560427 ZDHHC14Q8IZN3 488 aa13.83□□□□□ -0.2
NEDD8-208ENST00000560427 PPM1KQ8N3J5 372 aa13.83□□□□□ -0.2
NEDD8-208ENST00000560427 TATDN2Q93075 761 aa13.83□□□□□ -0.2
NEDD8-208ENST00000560427 ELMO3Q96BJ8 720 aa13.83□□□□□ -0.2
NEDD8-208ENST00000560427 SMARCD1Q96GM5 515 aa13.83□□□□□ -0.2
NEDD8-208ENST00000560427 SPATA17Q96L03 361 aa13.83□□□□□ -0.2
NEDD8-208ENST00000560427 C8orf48Q96LL4 319 aa13.83□□□□□ -0.2
NEDD8-208ENST00000560427 ARID3AQ99856 593 aa13.83□□□□□ -0.2
NEDD8-208ENST00000560427 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.83□□□□□ -0.2
NEDD8-208ENST00000560427 FANCLQ9NW38 375 aa13.83□□□□□ -0.2
NEDD8-208ENST00000560427 EHD2Q9NZN4 543 aa13.83□□□□□ -0.2
NEDD8-208ENST00000560427 UXTQ9UBK9 157 aaPredicted RBP13.83□□□□□ -0.2
NEDD8-208ENST00000560427 HMGXB4Q9UGU5 601 aa13.83□□□□□ -0.2
NEDD8-208ENST00000560427 C2orf16Q68DN1 1984 aa13.83□□□□□ -0.2
NEDD8-208ENST00000560427 UNC80Q8N2C7 3258 aa13.82□□□□□ -0.2
NEDD8-208ENST00000560427 RFX1P22670 979 aa13.82□□□□□ -0.2
NEDD8-208ENST00000560427 CYP2F1P24903 491 aa13.82□□□□□ -0.2
NEDD8-208ENST00000560427 LRMPQ12912 555 aa13.82□□□□□ -0.2
NEDD8-208ENST00000560427 TAF12Q16514 161 aa13.82□□□□□ -0.2
NEDD8-208ENST00000560427 CCDC142Q17RM4 750 aa13.82□□□□□ -0.2
NEDD8-208ENST00000560427 PRSS36Q5K4E3 855 aa13.82□□□□□ -0.2
NEDD8-208ENST00000560427 DNAJB7Q7Z6W7 309 aaPredicted RBP13.82□□□□□ -0.2
NEDD8-208ENST00000560427 ACOT1Q86TX2 421 aa13.82□□□□□ -0.2
NEDD8-208ENST00000560427 FAM35AQ86V20 835 aa13.82□□□□□ -0.2
NEDD8-208ENST00000560427 TMC8Q8IU68 726 aa13.82□□□□□ -0.2
NEDD8-208ENST00000560427 GJD3Q8N144 294 aa13.82□□□□□ -0.2
NEDD8-208ENST00000560427 AOPEPQ8N6M6 819 aa13.82□□□□□ -0.2
NEDD8-208ENST00000560427 UBR7Q8N806 425 aa13.82□□□□□ -0.2
NEDD8-208ENST00000560427 FEZF2Q8TBJ5 459 aa13.82□□□□□ -0.2
NEDD8-208ENST00000560427 FAM200AQ8TCP9 573 aa13.82□□□□□ -0.2
NEDD8-208ENST00000560427 WHAMMQ8TF30 809 aa13.82□□□□□ -0.2
NEDD8-208ENST00000560427 TRMT2BQ96GJ1 504 aaKnown RBP13.82□□□□□ -0.2
NEDD8-208ENST00000560427 TMEM176AQ96HP8 235 aa13.82□□□□□ -0.2
NEDD8-208ENST00000560427 RPGRIP1Q96KN7 1286 aa13.82□□□□□ -0.2
NEDD8-208ENST00000560427 TWNKQ96RR1 684 aa13.82□□□□□ -0.2
NEDD8-208ENST00000560427 CORO1BQ9BR76 489 aa13.82□□□□□ -0.2
NEDD8-208ENST00000560427 HCFC1R1Q9NWW0 138 aa13.82□□□□□ -0.2
NEDD8-208ENST00000560427 EPS15L1Q9UBC2 864 aa13.82□□□□□ -0.2
NEDD8-208ENST00000560427 LIMA1Q9UHB6 759 aaKnown RBP13.82□□□□□ -0.2
NEDD8-208ENST00000560427 ZMYM5Q9UJ78 669 aa13.82□□□□□ -0.2
NEDD8-208ENST00000560427 MRPS23Q9Y3D9 190 aaKnown RBP13.82□□□□□ -0.2
NEDD8-208ENST00000560427 BECN2A8MW95 431 aa13.81□□□□□ -0.2
NEDD8-208ENST00000560427 SOAT2O75908 522 aa13.81□□□□□ -0.2
NEDD8-208ENST00000560427 NOL4O94818 638 aa13.81□□□□□ -0.2
NEDD8-208ENST00000560427 BDNFP23560 247 aa13.81□□□□□ -0.2
NEDD8-208ENST00000560427 CDC25CP30307 473 aa13.81□□□□□ -0.2
NEDD8-208ENST00000560427 GRIK1P39086 918 aa13.81□□□□□ -0.2
NEDD8-208ENST00000560427 KRT31Q15323 416 aa13.81□□□□□ -0.2
NEDD8-208ENST00000560427 HSP90AA4PQ58FG1 418 aa13.81□□□□□ -0.2
NEDD8-208ENST00000560427 FKBP15Q5T1M5 1219 aa13.81□□□□□ -0.2
NEDD8-208ENST00000560427 GET4Q7L5D6 327 aaPredicted RBP13.81□□□□□ -0.2
NEDD8-208ENST00000560427 SCN4BQ8IWT1 228 aa13.81□□□□□ -0.2
NEDD8-208ENST00000560427 FUKQ8N0W3 1084 aa13.81□□□□□ -0.2
NEDD8-208ENST00000560427 MYRFLQ96LU7 910 aa13.81□□□□□ -0.2
NEDD8-208ENST00000560427 HNRNPABQ99729 332 aaKnown RBP13.81□□□□□ -0.2
NEDD8-208ENST00000560427 LPIN3Q9BQK8 851 aa13.81□□□□□ -0.2
NEDD8-208ENST00000560427 LRRC3Q9BY71 257 aa13.81□□□□□ -0.2
NEDD8-208ENST00000560427 B3GNT5Q9BYG0 378 aa13.81□□□□□ -0.2
NEDD8-208ENST00000560427 ZNF518BQ9C0D4 1074 aa13.81□□□□□ -0.2
NEDD8-208ENST00000560427 GPR88Q9GZN0 384 aa13.81□□□□□ -0.2
NEDD8-208ENST00000560427 PNPLA8Q9NP80 782 aa13.81□□□□□ -0.2
NEDD8-208ENST00000560427 DMAP1Q9NPF5 467 aaPredicted RBP13.81□□□□□ -0.2
NEDD8-208ENST00000560427 GDE1Q9NZC3 331 aa13.81□□□□□ -0.2
NEDD8-208ENST00000560427 APEX2Q9UBZ4 518 aa13.81□□□□□ -0.2
NEDD8-208ENST00000560427 CDH7Q9ULB5 785 aa13.81□□□□□ -0.2
NEDD8-208ENST00000560427 KIAA1257Q9ULG3 409 aa13.81□□□□□ -0.2
NEDD8-208ENST00000560427 DAAM1Q9Y4D1 1078 aa13.81□□□□□ -0.2
NEDD8-208ENST00000560427 LRRC10BA6NIK2 292 aa13.8□□□□□ -0.2
NEDD8-208ENST00000560427 SOBPA7XYQ1 873 aa13.8□□□□□ -0.2
NEDD8-208ENST00000560427 C2CD4DB7Z1M9 353 aa13.8□□□□□ -0.2
NEDD8-208ENST00000560427 PAEPP09466 180 aa13.8□□□□□ -0.2
NEDD8-208ENST00000560427 FAM200BP0CF97 657 aa13.8□□□□□ -0.2
NEDD8-208ENST00000560427 CDK11BP21127 795 aaKnown RBP13.8□□□□□ -0.2
NEDD8-208ENST00000560427 ACO1P21399 889 aaKnown RBP13.8□□□□□ -0.2
NEDD8-208ENST00000560427 PON1P27169 355 aa13.8□□□□□ -0.2
NEDD8-208ENST00000560427 GBP2P32456 591 aaPredicted RBP13.8□□□□□ -0.2
NEDD8-208ENST00000560427 SSTR3P32745 418 aaPredicted RBP13.8□□□□□ -0.2
NEDD8-208ENST00000560427 RAD23BP54727 409 aa13.8□□□□□ -0.2
NEDD8-208ENST00000560427 MFAP3P55082 362 aa13.8□□□□□ -0.2
NEDD8-208ENST00000560427 TPM4P67936 248 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms